BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43630.1
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473769 jgi|Araly1|473769|fgenesh2_kg.1__3723__AT1G43630.1 1666 0.0
> Ahg473769 jgi|Araly1|473769|fgenesh2_kg.1__3723__AT1G43630.1
Length=1314
Score = 1666 bits (902), Expect = 0.0
Identities = 1116/1218 (92%), Gaps = 19/1218 (2%)
Strand=Plus/Plus
Query 150 TATTTCAAAGATGCCAGAGACAGAATATTCGTTTGGAAGGTCATTCCTTAGTTTGCGCCG 209
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 103 TATTTCAAAGATGCCAGAGACAGAGTATTCGTTTGGAAGGTCATTACTGAGTTTGCGTCG 162
Query 210 AGACCAAGCACACTTAATGGATCCAA-CAT-CCTTCTCTGAGCCTATGACCATGGAGGTA 267
||||||||||||||||||||| ||| | | ||||| | |||||||||| ||||||||||
Sbjct 163 GGACCAAGCACACTTAATGGAT-CAATC-TGCCTTCCCCGAGCCTATGAGCATGGAGGTA 220
Query 268 GAGTTAGATTCTTTTCAAAGACAAGTTGCGGAAAAATTCATCGATCTTAATGCCTCCGCG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 221 GAGTTAGATTCTTTTCAAAGACAAGTTGCGGAAAAATTCATCGATCTTAATGCTTCCGCG 280
Query 328 GATGAGGCTGAGATCCTCTCACTTGAATGGATAGGGAAACTTCTTGATTCTTTTCTTTGT 387
| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GCTGATGATGAGATCCTATCACTTGAATGGATAGGGAAACTTCTTGATTCTTTTCTTTGT 340
Query 388 TGCCAAGAAGATTTCCGAGTTATAATATTCAACCACAAACCTCAGCTCCTCAAACAACCA 447
||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 341 TGCCAAGAAGATTTCCGAGTTATAATATTCAACCATAAGTCTCAGCTCCTTAAACAACCA 400
Query 448 ATGGACCGCTTGATAGAAGAATACTTCGAGAGGAGTGTAAAAGCTCTTGATGTATGCAAT 507
|||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct 401 ATGGACCGATTGATAGAAGACTACTTCGAAAGGAGTGTTAAAGCTCTTGATGTATGTAAT 460
Query 508 GCGATACGTGATGGCATCGAGCAAATCCGACAGTGGCAGAAACTAATTGAAATCGTAATA 567
||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct 461 GCGATCCGTGATGGCATCGAGCAAATCCGACAATGGCAAAAACTGATTGAAATTGTTATA 520
Query 568 TCGGCTTTGGACACGA-AC-CAAA-GACAACTTGGAGAAGGAGAAATCCACCGTGCAAAG 624
|| ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 521 TCCGCTTTGGACACGAGTCGAAAACAACAACTTGGAGAAGGAGAAATCCACCGTGCAAAG 580
Query 625 AAAGCTTTGATTGATTTGGCAATTGGAATGCTCGACGAGAAAGACTCTTCTAACAC---- 680
|||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 581 AAAGCTTTAATTGATTTGGCGATTGGAATGCTAGACGAGAAAGAGTCTTCAAACACATTG 640
Query 681 -C-CACCGTAATCGCTCTTTCACACGCAACAAGGACCATAATCAACACATTGGCTATATC 738
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 641 GCACACCGTAATCGCTCTTTCGCACGCAACAAAGACCATAATCAACACATTGGCTACATT 700
Query 739 AGGTCACTTTCTTGGAGTGTTTCTCGGTCGTGGTCGGCATCAAGGCAGTTACAAGGCATT 798
||||||||||||||||| ||||| ||||| ||||| || | ||||||||||||||||||
Sbjct 701 AGGTCACTTTCTTGGAGCGTTTCCCGGTCATGGTCAGCCGCTAGGCAGTTACAAGGCATT 760
Query 799 GGAAATAACTTAGCAACCCCTCGAGCCAGCGATGTTATGGCGACTAATGGCCTAGCTCTC 858
||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 761 GGAAATAACTTAGCAACGCCTCGAGCAAGCGATGTCATGGCTACTAATGGCCTAGCCCTC 820
Query 859 ACAGTGTATACAATGACATCAATACTGTTGTTTGTAACTTGGGTTCTTGTCGCAGCCATA 918
|| || ||||| |||||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct 821 ACTGTCTATACGATGACATCAATATTATTGTTTGTAACATGGGTTCTTGTCGCAGCAATA 880
Query 919 CCTTGTCAAGATCGTGGTTTACATGTCCATTTCTATTTCCCTAGGCATTTCCAATGGGCA 978
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 CCTTGTCAAGACCGTGGTTTACATGTCCATTTCTATTTCCCTAGGCATTTCCAATGGGCA 940
Query 979 GTACCAGTCATGTCCTTGCACGATAAGATTATGGACGAATCAAAGAAAAGAGACAAAAAG 1038
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 941 GTACCAGTCATGTCCTTGCACGATAAGATCATGGAGGAATCAAAGAAAAGAGACAAAAAG 1000
Query 1039 AAGAAGGGTTGTGGACTACTTAGGGAGATTAATCAAATCGAGAGAAACTCGAGAATGTTA 1098
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1001 AAAAAGGGTTGTGGACTACTTAGAGAGATTAATCAAATCGAGAGAAGCTCGAGAATGTTA 1060
Query 1099 AGTGATTTGATTGATTCGGACAATTTCTCATTAACAGATGAAAAATGTACTTTAGAGGTG 1158
||||||||||| |||||||||| ||||||||||||||||| || | | ||||||||||
Sbjct 1061 AGTGATTTGATCGATTCGGACAGCTTCTCATTAACAGATGAGAA--G-AGTTTAGAGGTG 1117
Query 1159 AAGGAGAGAGTTCAAGAATTGATGAATGTGTGTGAAGCTAT-AAAGGAGGGTTTAGATCC 1217
||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||
Sbjct 1118 AAGGAGAGAGTTCAAGAATTGATGAATGTGTGTGAAGCTATGAAAG-ATGGTTTGGATCC 1176
Query 1218 ATTTGATAGGAAAGTGAGGGATGTCTTCCACCAAATTGTTCGTACTCGCACCGAAGCTCT 1277
||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||
Sbjct 1177 ATTTGATAGGAAAGTGAGGAATGTCTTTCACCAAATTGTTCGTACTCGCACTGAGGCTCT 1236
Query 1278 TGATTCACTTGGAAAGCTTCAAAATCAAGAATAGAACATTTTGAGATATGTGTTAATATT 1337
|||||||||||||||||||| ||||||||||||| |||||||| ||||||| || || ||
Sbjct 1237 TGATTCACTTGGAAAGCTTCGAAATCAAGAATAGGACATTTTGCGATATGTTTTCATCTT 1296
Query 1338 T-GTGGAGTTTTGTTTTA 1354
| ||||||||||||||||
Sbjct 1297 TTGTGGAGTTTTGTTTTA 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5