BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43640.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473770 jgi|Araly1|473770|fgenesh2_kg.1__3724__AT1G43640.1 1327 0.0
Ahg922848 jgi|Araly1|922848|scaffold_104129.1 643 0.0
> Ahg473770 jgi|Araly1|473770|fgenesh2_kg.1__3724__AT1G43640.1
Length=1498
Score = 1327 bits (718), Expect = 0.0
Identities = 946/1050 (90%), Gaps = 39/1050 (4%)
Strand=Plus/Plus
Query 1 TGagaaaaaacagcaaagaaaatcagagagatcaaaaaaaagaaaaaaaaGAACAGAGAT 60
||||||||||||||||||| ||||||||||| | | || ||||| || |||||||||
Sbjct 1 TGAGAAAAAACAGCAAAGATAATCAGAGAGAGC----AGAA-AAAAAGAA-AACAGAGAT 54
Query 61 TCTTTTGAACTAACGAAGACATATCGTTTCTCTAAAGTAGAATCTTTGGTATTCGGAAAA 120
|||||| |||||||||||||||| ||||| ||| ||| |||| |||||||||||||||||
Sbjct 55 TCTTTTAAACTAACGAAGACATAGCGTTTTTCTGAAGCAGAAGCTTTGGTATTCGGAAAA 114
Query 121 ATGTCGTTTCTG-AGTATTGTTCGTGATGTTAGAGATACTGTAGGAAGCTTTTCGAGACG 179
||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 115 ATGTCGTTT-GGTAGTATTGTTCGTGATGTTAGAGATAGTATAGGAAGCTTTTCGAGACG 173
Query 180 TAGTTTCGACGTGAGAGTATCTAATGGGACGACTCATCAGAGGAGTAAATCTCAC-G-G- 236
||||||||| |||||||| |||||| || ||||||||||||||||||||||||| | |
Sbjct 174 TAGTTTCGAAGTGAGAGTGTCTAAT-GG--GACTCATCAGAGGAGTAAATCTCACGGTGC 230
Query 237 ---TGTTGAGGCACATATTGAAGATCTTATTGTAATCAAGAACACTCGTTGGGCTAATTT 293
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 231 ATCTGTTGAGACACATATTGAAGATCTTGTTGTAATCAAGAACACTCGTTGGGCTAATTT 290
Query 294 ACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAGCGAGAGTACTTGGCC 353
|||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 291 ACCGGCTGCGCTGTTACGAGATGTGATGAAAAAGTTGGATGATAGCAAGAGCACTTGGCC 350
Query 354 TGCACGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACATGGAGACTAATGTGCAA 413
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 351 TGCTCGTAAACAAGTTGTTGCTTGTGCTGGTGTTTGCAAGACATGGAGACTAATGTGCAA 410
Query 414 AGATATTGTGAAAAGTCCTGAGTTCTCAGGCAAACTCACATTTCCAGTTTCGTTGAAACA 473
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 411 AGATATTGTGAAAAGTCCTGAGTTCTCAGGAAAACTCACATTTCCAGTTTCATTGAAACA 470
Query 474 GCCCGGGCCTAGGGATGGAATCATACAATGTTATATCAAAAGAGACAAGTCTAACATGAC 533
||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||| |||||
Sbjct 471 GCCCGGGCCTAGGGACGGAACCATACAATGTTTTATCAAAAGGGACAAGTCTAATATGAC 530
Query 534 TTACCACCTTTACCTTTCTCTTAGTCCTGC-CATA-CTTGTTGAAAGTGGGAAGTTTCTT 591
|||||| |||||||||||||||||||||| | || | | ||| | || ||| |
Sbjct 531 TTACCATCTTTACCTTTCTCTTAGTCCTGTAC-TAACCT-TTGTCA-----AA-TTTGTA 582
Query 592 CTCTCGGCAAAGCGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCA 651
| | || || || | | ||||||||||||||||||| |||||||||||||||
Sbjct 583 C-------A--GC-CTTACTTA-A-CTACATACACAGAGTATGTGATATCAATGGATGCA 630
Query 652 GACAACATTTCAAGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGG 711
|||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 631 GACAACATATCAAGATCAAGCAGCACATACATTGGCAAACTGAGGTCTAACTTTCTAGGG 690
Query 712 ACAAAATTTATAGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCA 771
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 691 ACAAAATTTATAGTATATGATACGGCTCCTGCATACAACAGTAGCCAGATATTGTCCCCA 750
Query 772 CCAAACCGGAGTCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGT 831
|||||||| |||||||| ||||||||| ||||||| |||||||| ||||| |||||||||
Sbjct 751 CCAAACCGAAGTCGTAGGTTCAACTCCGAGAAAGTCTCTCCCAAGGTCCCCTCTGGAAGT 810
Query 832 TACAACATTGCTCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTAGA 891
|||||||| |||||||||||||||||||| ||| || ||||||||||| ||||||| ||
Sbjct 811 TACAACATCGCTCAAGTTACATACGAGCTTAACGTGTTTGGAACCCGTAGACCTCGCAGG 870
Query 892 ATGAACTGCATTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCT 951
||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 871 ATGCACTGCACTATGCACTCTATCCCTTCCTTAGCTCTAGAACCCGGCGGTACTGTCCCT 930
Query 952 AGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCA 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCA 990
Query 1012 AAGATAGTCAACCACTCGGGAGATTTCACC 1041
||||||||| ||||||||||||||||||||
Sbjct 991 AAGATAGTCGACCACTCGGGAGATTTCACC 1020
Score = 422 bits (228), Expect = 5e-117
Identities = 346/400 (87%), Gaps = 20/400 (5%)
Strand=Plus/Plus
Query 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAACTAAACCGCCAAGGTGGCTCCAACCGTTGC 1117
||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||| |||||
Sbjct 1067 AAGGAAAGGAACGACCTTTGGTACTGAAAAATAAGCCGCCGAGGTGGCACCAAAAGTTGC 1126
Query 1118 GATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCAGT 1177
||| |||||||||||||||| |||||||||||| |||||||| || || ||||||||||
Sbjct 1127 AATGCTGGTGCCTTAACTTCAGAGGGAGAGTGACAGTAGCTTCAGTAAAAAACTTCCAGT 1186
Query 1178 TGATGTCCGCTGCAACGGTTCAGCCCGGTAGTGGTAGTGATGGTGGAGCATTGGCTACGA 1237
|| | ||||||||||||||||||||| | | || ||||||||| | || |
Sbjct 1187 TGGTATCCGCTGCAACGGTTCAGCCC----------G-G-TGCTGGAGCATT-G--ACCA 1231
Query 1238 GGCCATCGTTATCACCACAGCAGCCAGAGCAATCAAACCATGATAAGATAATACTACACT 1297
||||| ||||| ||||| |||||| |||| || |||||||| ||||||||||||| |
Sbjct 1232 ---CATCGGTATCATCACAGAAGCCAGGGCAAACAGACCATGATGAGATAATACTACAGT 1288
Query 1298 TTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTC 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTC 1348
Query 1358 AAGCGTTTGCCATTTCCCTGAGCACCTTTGATACTAAATTGGCATGTGAATAAAAGTAGA 1417
|||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1349 AAGCATTTGCCATTTGCTTGAGCAGCTTTGATACTAAATTGGCATGTGAATAAAAGTAGA 1408
Query 1418 AAGATCATAAGAGGGACTTAAAACT-AATAGGAACCGTTT 1456
|||||||||||| ||| || ||| | ||||||||||||||
Sbjct 1409 AAGATCATAAGATGGAGTTCAAA-TGAATAGGAACCGTTT 1447
> Ahg922848 jgi|Araly1|922848|scaffold_104129.1
Length=1134
Score = 643 bits (348), Expect = 0.0
Identities = 700/858 (82%), Gaps = 72/858 (8%)
Strand=Plus/Plus
Query 433 GAGTTCTCAGGCAAACTCACA--TTTCCAG-T--TTCGTTGA---AACAGCCCGGGCCTA 484
||||||||||||||||||||| ||| | | | || |||| ||||| |||||||
Sbjct 296 GAGTTCTCAGGCAAACTCACACGTTT-CTGATAACTCTTTGATTGTGCAGCCTGGGCCTA 354
Query 485 GGGATGGAATCATACAATG-TTATATCAAAAGAGACAAGTCTAACATGACTTACCACCTT 543
|||| |||| ||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 355 GGGACGGAACCATACAATGCTT-CATCAAAAGGGACAAGTCTAATATGACTTACCACCTT 413
Query 544 TACCTTTCTCTTAGTCCTGCCATACTTGTTGAAAGTGGGAAGTTTCTTCTCTCGGCAAAG 603
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 414 TACCTTTCTCTTAGTCCTTCCTTACTTGTTGAAAGTGGAAAGTTTCTTCTCTCGGCAAAG 473
Query 604 CGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCAGACAACATTTCA 663
||| | || ||||||||||||| |||||| || ||||| |||||||| || ||||||||
Sbjct 474 CGCACCCGAAGAGCTACATACATAGAGTACGTGATATCGATGGATGCTGATAACATTTCG 533
Query 664 -AGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGGACAAAATTTAT 722
|| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 534 CAG-TCAAGCAGCAGTTACATTGGCAAAATGAGGTCTAACTTTCTAGGGACAAAATTTGT 592
Query 723 AGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCACCAAACCGGAG 782
| |||| ||||| || |||||| ||||| || |||| ||| ||||| |||||| ||||||
Sbjct 593 AATATACGATACAGCGCCTGCGCACAACGGTTGCCAAATAATGTCCTCACCAAGCCGGAG 652
Query 783 TCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGTTACAACATTGC 842
|||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 653 TCGTAGGTTCAGCTCCAAGAAAGTCTCTCCCAAAGTCCCCTCTGGAAGTTACAACATTGC 712
Query 843 TCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTA-GAATGAACTGCA 901
||||||||||| || ||||||||||||||||||||||||||||| | || || ||||||
Sbjct 713 CCAAGTTACATATGAACTGAACTTGCTTGGAACCCGTGGACCTCGCAAGA-TGCACTGCA 771
Query 902 TTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCTAGCCAACCTG 961
||||||| ||||| || | ||| ||| | | || | |||||||||
Sbjct 772 TTATGCATTCTAT----TCGT--GCTTTAG--CTC-----TA--G------GCCAACCTG 810
Query 962 AGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCAAAGATAGTCA 1021
|| |||| |||| ||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 811 AGCTTCTTCAACACTCCTTTGATGAATCTTTCGGCAGCATCGGTTCCTCAAAGATAATCG 870
Query 1022 ACCACTCGGGAGATTT---CA-C-CC-GA--C-C-GA-A-------A--G-A-G-G-AAG 1057
|||||||||| ||||| || | || | | | || | | | | | | |||
Sbjct 871 ACCACTCGGGGGATTTTAGCAGCGCCCGGTTCTCTGACATTGTTGGATCGCAAGAGGAAG 930
Query 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAA-CTAAACCGCCAAGGTGGC-TCCAACCGTT 1115
||||||||| ||| ||||||| || |||| | |||||||| ||||||| | || | |
Sbjct 931 AAGGAAAGGAACGAACTTTGGTGCTTAAAAAC-AAACCGCCGAGGTGGCATGGAAA-GCT 988
Query 1116 GCGATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCA 1175
||| || ||||||||| |||||| |||||||||||| || ||||| ||||||||||||||
Sbjct 989 GCGGTGCTGGTGCCTTCACTTCAGAGGGAGAGTGACAGTTGCTTCCGTCAAGAACTTCCA 1048
Query 1176 GTTGATGTCCGCTGCAACGGTTCAGCCCGGT--AG-T-GG----TAGTGATGGTGGAGCA 1227
||||||||||||||||||||||| || ||| || | || ||||| || |||||||
Sbjct 1049 ATTGATGTCCGCTGCAACGGTTCAACCTGGTCCAGATAGGCAGATAGTGGTGCTGGAGCA 1108
Query 1228 TTGGCTACGAGGCCATCG 1245
||| | ||||||||||||
Sbjct 1109 TTGACCACGAGGCCATCG 1126
Score = 292 bits (158), Expect = 4e-78
Identities = 258/304 (85%), Gaps = 15/304 (5%)
Strand=Plus/Plus
Query 104 CTTTGGTATTCGGAAAAATGTCGTTTCTG-AGTATTGTTCGTGATGTTAGAGATACTGTA 162
|||||||||| ||| ||||| |||||| | || |||||||||||||||||||||| | ||
Sbjct 4 CTTTGGTATTGGGATAAATGACGTTTC-GTAGCATTGTTCGTGATGTTAGAGATAGTATA 62
Query 163 GGAAGCTTTTCGAGACGTAGTTTCGACGTGAGAGTATCTAATGGGACGACT-CATCAGAG 221
||||||||||||||||||||| |||| |||||||| ||||||| ||| | | ||| |
Sbjct 63 GGAAGCTTTTCGAGACGTAGTGTCGAAGTGAGAGTGTCTAATGAGACTAGTAAATCTCAC 122
Query 222 GAGTAAATCTCACGGTGTTGAGGCACAT-AT--TGAAGATCTTATTGTAATCAAGAACAC 278
| || || | | |||||| ||||| || ||||||||| ||||||||||||||||
Sbjct 123 G-GTGCAT-T----G-GTTGAGACACATGATCAAGAAGATCTTGTTGTAATCAAGAACAC 175
Query 279 TCGTTGGGCTAATTTACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAG 338
||||||||||||||| || |||| | | |||| ||||||||||||||||||||||||||
Sbjct 176 TCGTTGGGCTAATTTGCCAGCTGAGGTGCTACGTGATGTGATGAAAAAGTTGGATGAAAG 235
Query 339 CGAGAGTACTTGGCCTGCA-CGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACAT 397
|||||| || ||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 236 CGAGAGCACGTGGCCTG-ATCGTAAACAAGTTGTTGCTTGTGCTGGTGTCTGCAAGACAT 294
Query 398 GGAG 401
||||
Sbjct 295 GGAG 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5