BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43650.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922857 jgi|Araly1|922857|scaffold_104138.1 1788 0.0
Ahg922851 jgi|Araly1|922851|scaffold_104132.1 754 0.0
> Ahg922857 jgi|Araly1|922857|scaffold_104138.1
Length=1073
Score = 1788 bits (968), Expect = 0.0
Identities = 1039/1074 (97%), Gaps = 1/1074 (0%)
Strand=Plus/Plus
Query 18 AACACACATCACTATTACACGATGATGATGGAGCACAAAGCCAACATGGCAATGGTGTTT 77
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACATACATCA-TATTACACGATGATGATGGAGCACAAAGCCAACATGGCAATGGTGTTT 59
Query 78 GTACAGATTGTATACGCAGGCATGCCATTGCTCTCTAAAGTAGCCATCTCTCAAGGAACC 137
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 60 GTACAGATTGTATATGCAGGAATGCCATTGCTCTCTAAAGTGGCTATCTCTCAAGGAACC 119
Query 138 AACCCTTTTGTCTTTGTTTTTTATAGACAAGCCTTCGCGGCTCTTGCCTTGTCCCCTTTC 197
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 120 AACCCTTTTGTCTTTGTTTTCTATAGACAAGCCTTCGCGGCTCTTGCCTTATCGCCTTTC 179
Query 198 GCATTCTTCCTTGAAAGCTCCAAGTCCTCTCCTCTATCGTTTATCTTGCTGCTCAAAATA 257
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 GCATTCTTCCTTGAAAGCTCCAAGTCCTCTCCTCTATCGTTTGTCTTGTTGCTCAAAATA 239
Query 258 TTCTTTATCTCCTTATGCGGACTCACGCTGAGTCTTAATCTCTACTATGTGGCCATCGAG 317
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 240 TTCTTTATCTCCTTATGCGGACTCACGCTGAGTCTTAACCTCTACTACGTGGCCATCGAG 299
Query 318 AACACCACCGCCACCTTCGCGGCAGCCACCACCAACGCCATCCCCTCTATCACATTCGTC 377
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 AACACCACCGCCACTTTCGCGGCAGCCACCACCAACGCCATCCCCTCTATCACCTTCGTC 359
Query 378 TTGGCTCTCCTATTCAGATTAGAGACGGTGACCTTGAAGAAGTCACACGGAGTGGCCAAA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGGCTCTCCTATTCAGATTAGAGACGGTGACCTTGAAGAAGTCACACGGAGTGGCCAAA 419
Query 438 GTCACTGGTTCAATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCA 497
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTCATTGGTTCAATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCA 479
Query 498 AGTTTGATAAACCACTATAACAGCAGCACCATCCCAAACGGCACCGTTCCATCAACCAAA 557
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTTGATAAACCACAATAACAGCAGCACCATCCCAAACGGCACCGTTCCATCAACCAAA 539
Query 558 AATTCTGTAAAAGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATTCTGTAAAAGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATT 599
Query 618 ATCATGCAGAGCAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAGCACTTCAA 677
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 600 ATCATGCAGAGCAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAACAGTACAA 659
Query 678 TGCTTGTTCAGTTGCATACAAAGCGCAGTTTGGGCAGTCGCGGTGAACAGAAACCCATCA 737
||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 660 TGCTTCTTTAGTTGCATACAAACCGCAGTTTGGGCAGTCGCGGTGAACAGAAGTCCATCA 719
Query 738 GTTTGGAAAATCGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTG 797
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTTGGAAGATCGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTG 779
Query 798 ACTGGACTGACATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACT 857
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTGGCCTCACATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACT 839
Query 858 GCACTATACACTCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAG 917
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCACTCTACACTCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAG 899
Query 918 GAAACATTTTACCTTGGAAGTGTGGGTGGGGCAGTGTTGTTGGTGTGTGGACTATACCTT 977
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAACACTTTACCTTGGAAGTGTGGGTGGGGCAGTGTTGTTGGTGTGTGGACTATACCTT 959
Query 978 GGTCTATGGGGTAAAACTAAAGAAGAGGAAATACAAAGATATGGTGAAAAGCAAAGCCAA 1037
|||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 960 GGTCTATGGGGTAAAACTAAAGAAGAGGAAGTGCAAAGATATGGTGAAAAGAAAAGCCAA 1019
Query 1038 AAAGAAATTATAGAAGAAGTTATCATCGTCTAGGATTGCATCTCAAAAGGCATC 1091
||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAGAGACTATAGAAGAAGTTATCATCGTCTAGGATTGCATCTCAAAAGGCATC 1073
> Ahg922851 jgi|Araly1|922851|scaffold_104132.1
Length=817
Score = 754 bits (408), Expect = 0.0
Identities = 505/549 (92%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 393 AGATTAGAGACGGTGAC--C-TTGAAGAAGTCACACGGAGTGGCCAAAGTCACTGGTTCA 449
||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 27 AGATTAGAGACGGTGACGACGTTGAAGAAGTCACACGGAGTGGCCAAAGTCATTGGTTCG 86
Query 450 ATGGTTGGAATGTTGGGCGCATTAGTGTTTGCTTTTGTAAAAGGGCCAAGTTTGATAAAC 509
|||||||||| | | ||||||||||||||||| ||||||||||||||||| |||
Sbjct 87 ATGGTTGGAA---T----G--TTAGTGTTTGCTTTTGTGAAAGGGCCAAGTTTGATCAAC 137
Query 510 CACTATAACAGC-AGCACCATCCCAAACGGCACCGTTCCATCAACCAAAAATTCTGTAAA 568
|||||||| ||| || ||||| |||||||||||||||||||| |||||| ||| ||||||
Sbjct 138 CACTATAATAGCAAG-ACCATACCAAACGGCACCGTTCCATCGACCAAAGATTTTGTAAA 196
Query 569 AGGTTCAATCACAATGCTCGCTGCCAATACTTGCTGGTGTTTGTGGATTATCATGCAGAG 628
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 197 AGGTTCAATCACAATGCTTGCTGCCAATACTTGCTGGTG-TTGTGGATTATCATGC--AG 253
Query 629 CAAGGTGATGAAGGAATATCCAGCGAAGTTGCGATTGGTAGCACTTCAATGCTTGTTCAG 688
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 254 CAAGGTGATGAAGGAATACCCAGCGAAGTTGCGATTGGTAACACTTCAATGCTTATTCAG 313
Query 689 TTGCATACAAAGCGCAGTTTGGGCAGTCGCGGTGAACAGAAACCCATCAGTTTGGAAAAT 748
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 314 TTGCATACAAACCGCAGTTTGGGCAGTCGCGGTGAACAGAAATCCATCAGTATGGAAGAT 373
Query 749 CGAATTCGGCTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTGACTGGACTGAC 808
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 374 CGAATTCGGTTTACCTCTTCTCTCAATGGCTTATTGTGGAATTATGGTGACTGGGCTCAC 433
Query 809 ATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACTGCACTATACAC 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 434 ATATTGGTTACAAGTATGGGCAATAGAGAAGAAAGGGCCAGTATTCACTGCACTCTATAC 493
Query 869 TCCTTTAGCTCTCATCCTTACTTGCATTGTCTCATCTTTCCTTTTCAAGGAAACATTTTA 928
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| | ||
Sbjct 494 TCCTTTAGCTCTCATCATTACTTGCATAGTCTCATCTTTCCTTTTTAAGGAAACACTATA 553
Query 929 CCTTGGAAG 937
|||||||||
Sbjct 554 CCTTGGAAG 562
Score = 198 bits (107), Expect = 7e-50
Identities = 127/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 936 AGTGTGGGTGGGGCAGTGTTGTTGGTGTGTGGACTATACCTTGGTCTATGGGGTAAAACT 995
||||||||||| || ||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 663 AGTGTGGGTGGAGCTGTGTTGTTGGTGTGTGGACTATATCTTGGTTTGTGGGGTAAAACT 722
Query 996 AAAGAAGAGGAAATACAAAGATATGGTGAAAAGCAAAGCCAAAAAGAAATTATAGAAGAA 1055
|||||||| |||||| || |||||||||||||||||||||||||||| |||| |||||||
Sbjct 723 AAAGAAGAAGAAATAGAAGGATATGGTGAAAAGCAAAGCCAAAAAGAGATTAAAGAAGAA 782
Query 1056 GTTATCATCGTCTAGGA 1072
|||||||||||||||||
Sbjct 783 GTTATCATCGTCTAGGA 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5