BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G43665.1

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919507 jgi|Araly1|919507|scaffold_100788.1                        344    2e-94


> Ahg919507 jgi|Araly1|919507|scaffold_100788.1
Length=334

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 256/290 (88%), Gaps = 4/290 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGTTCATCACTACATTAATGGTCATCGCCTTTGTCTTGTCGGT-TCTAGTTCCTAC  59
            ||||||||||||||| ||||| ||||||||||||||||| |||| || ||| ||||| ||
Sbjct  21   ATGAAGTTCATCACTGCATTAGTGGTCATCGCCTTTGTCATGTC-GTCTCTGGTTCCGAC  79

Query  60   CCAAGC-ACTTAGAGTTTTAAGTGAAGACAAAAAAGTGGCTTGCATTGTGACAGATCTTC  118
            | |||| | |||||||||  || |||||  | ||||| |||||||| | ||||||||| |
Sbjct  80   CAAAGCGA-TTAGAGTTTCGAGGGAAGAGGAGAAAGTAGCTTGCATCGAGACAGATCTCC  138

Query  119  AAGTATGCCTATCAGCGTTAGAGACCCCAATCCCACCATCAGCGGAATGTTGCAAAAACT  178
            ||||||||| | |||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct  139  AAGTATGCCAACCAGCGTTAGAAACCCCAAGCCCACCATCAACGGAATGTTGCAAAAACT  198

Query  179  TAAAAATACAAAAGTCTTGTCTATGTGATTACATGGAAAATCCATCGATTGAAAAGTATC  238
            ||||||||||| |||| ||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct  199  TAAAAATACAACAGTCATGTCTATGTGATTACATGGCAAACCCATCGATTGAGAAGTATC  258

Query  239  TTGAACCAGCTAGAAAAGTATTTGCAGCATGTGGTATGCCTTATCCTAGG  288
            ||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct  259  TTGAACCCGCTAGAAAAGTCTTTGCGGCTTGTGGTATGCCTTATCCTAGG  308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13278144972


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5