BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G43667.1 Length=510 Score E Sequences producing significant alignments: (Bits) Value Ahg919505 jgi|Araly1|919505|scaffold_100786.1 433 7e-121 > Ahg919505 jgi|Araly1|919505|scaffold_100786.1 Length=337 Score = 433 bits (234), Expect = 7e-121 Identities = 303/336 (90%), Gaps = 5/336 (1%) Strand=Plus/Plus Query 83 TTATT-ATATTAGAATACATGAAATTTACAACATTAGCATTCATTTTCTTTGTTCTATCG 141 ||||| | |||| || |||||||||| ||||| |||||||||||| |||||||||||||| Sbjct 3 TTATTAAAATTAAAAGACATGAAATTCACAACTTTAGCATTCATTGTCTTTGTTCTATCG 62 Query 142 TTGGTGGCTCCAATATATGGAGGGATTGTTAAAGTTTCGTGGGGCGAGAAGAAAGTGGCA 201 | ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| Sbjct 63 TCGGTGGCTCCAATATACGGAGGGATTGTTAAAGTTTCGTGGGACGAGAAGAAAGAGGCA 122 Query 202 TGCACCGTGACAGAATTGCAACCATGCCTACCATCGGTGATAGACGGAAGCCAACCATCA 261 |||| ||| ||| |||||||||||||||||||| |||| | | ||| ||||| ||||||| Sbjct 123 TGCATCGTAACAAAATTGCAACCATGCCTACCAGCGGTAACAAACGAAAGCCCACCATCA 182 Query 262 ACTCAATGTTGCGA-AAAATTGAAAGAACAAAATTCATGTTTTTGTGATTACTTGCAAAA 320 || |||||||| | |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 183 ACAGAATGTTGC-AGAAAATTGAAAGAACAACATTCATGTTTTTGTGATTACTTGCAAAA 241 Query 321 CCCACAATTTAGTCAATATATTACAGCTGCTAAACAAA-TCTTAGCGGCTTGTAAAATAC 379 |||||| ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||| Sbjct 242 CCCACAGTTTAGTCCATATATTACAGCTGGTAAA-AAAGTCTTAGCGGCTTGTAAAATAC 300 Query 380 CTTATCCTAATTGTTGAAGTGttaaatatttataaa 415 |||||||||| ||||||||| || |||||||||||| Sbjct 301 CTTATCCTAAATGTTGAAGTTTTGAATATTTATAAA 336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18543616254 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5