BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G43667.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919505 jgi|Araly1|919505|scaffold_100786.1                        433    7e-121


> Ahg919505 jgi|Araly1|919505|scaffold_100786.1
Length=337

 Score =  433 bits (234),  Expect = 7e-121
 Identities = 303/336 (90%), Gaps = 5/336 (1%)
 Strand=Plus/Plus

Query  83   TTATT-ATATTAGAATACATGAAATTTACAACATTAGCATTCATTTTCTTTGTTCTATCG  141
            ||||| | |||| || |||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct  3    TTATTAAAATTAAAAGACATGAAATTCACAACTTTAGCATTCATTGTCTTTGTTCTATCG  62

Query  142  TTGGTGGCTCCAATATATGGAGGGATTGTTAAAGTTTCGTGGGGCGAGAAGAAAGTGGCA  201
            | ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  63   TCGGTGGCTCCAATATACGGAGGGATTGTTAAAGTTTCGTGGGACGAGAAGAAAGAGGCA  122

Query  202  TGCACCGTGACAGAATTGCAACCATGCCTACCATCGGTGATAGACGGAAGCCAACCATCA  261
            |||| ||| ||| |||||||||||||||||||| |||| | | ||| ||||| |||||||
Sbjct  123  TGCATCGTAACAAAATTGCAACCATGCCTACCAGCGGTAACAAACGAAAGCCCACCATCA  182

Query  262  ACTCAATGTTGCGA-AAAATTGAAAGAACAAAATTCATGTTTTTGTGATTACTTGCAAAA  320
            ||  |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  183  ACAGAATGTTGC-AGAAAATTGAAAGAACAACATTCATGTTTTTGTGATTACTTGCAAAA  241

Query  321  CCCACAATTTAGTCAATATATTACAGCTGCTAAACAAA-TCTTAGCGGCTTGTAAAATAC  379
            |||||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct  242  CCCACAGTTTAGTCCATATATTACAGCTGGTAAA-AAAGTCTTAGCGGCTTGTAAAATAC  300

Query  380  CTTATCCTAATTGTTGAAGTGttaaatatttataaa  415
            |||||||||| ||||||||| || ||||||||||||
Sbjct  301  CTTATCCTAAATGTTGAAGTTTTGAATATTTATAAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5