BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43690.1
Length=2320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473774 jgi|Araly1|473774|fgenesh2_kg.1__3728__AT1G43690.1 3397 0.0
> Ahg473774 jgi|Araly1|473774|fgenesh2_kg.1__3728__AT1G43690.1
Length=2254
Score = 3397 bits (1839), Expect = 0.0
Identities = 2101/2222 (95%), Gaps = 39/2222 (2%)
Strand=Plus/Plus
Query 107 TTATCAGAGAAAAAGATTCGAATTGAGTGTCTTCATGATTTGGGCAAAGCTAATCTGATC 166
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 52 TTATCAGAG-AAAAGATTCGAATTGAGTTTCTTCATGATTTGGGCAAAGCTAATCTGATC 110
Query 167 TTGCGGAGACAACAACAAAAATTGTCTGtttttt-ttACCAATTCGTAACGGAAAGTGTT 225
||||||||||||||||||||||| | |||||||| ||||||| ||||||||| |||||||
Sbjct 111 TTGCGGAGACAACAACAAAAATT-TGTGTTTTTTATTACCAAATCGTAACGG-AAGTGTT 168
Query 226 CAAAGTTCCAATCTTTGGATCCTCCGAGCAAAATCTCTATCTTTTCAATGGCGGATCATC 285
||||||| | ||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 169 CAAAGTTACGATCTTTGGA---TCCGGGC-AAATCTCTATCTTTTCAATGGCGGATCATC 224
Query 286 AAGAAGACGAAGATTTGAAATTGGCTCTTA-AGATGAGTATGCAATACAATCCTCCTGAG 344
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 225 AAGAAGACGAAGATTTGAAATTGGCTC-TACAGATGAGTATGCAATACAATCCTCCTGAG 283
Query 345 CCAAAACGGAGCAAACCCATTGAAGAAGAAGAAACTGGATCCGGATCTCAATCTGGTGGT 404
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 284 CCAAAACGGAGCAAACCCATT---GAAGAAGAAACTGGATCCGGATCTCAATCTGGTGGT 340
Query 405 GAATCACCGGAGGCGAAATCTCGTCGGTTGCAGAGAGAGCTTATGGCTGCTGCTGCTGAG 464
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 341 GAATCACCGGAGGCGAAATCTCGGCGGTTGCAGCGAGAGCTTATGGCTGCTGCTGCTGAG 400
Query 465 AAGCGTATGGTTTTGTTTCCTAAGAGTCCTTCTCCTGTTAACAAAGCTAGGGTTTTGCCA 524
|| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 401 AAACGTATGGTTCTGTTTCCTAAGAGTCCTTCTCCTGTGAACAAAGATAGGGTTTTGCCA 460
Query 525 ATTAGTGTTGTTGGTGGTGATAA-G--GATG-A---G-GAAG-TTGTGGGATCTTG-TTT 574
||||| | |||||||||||||| | |||| | | |||| ||||||||| || |||
Sbjct 461 ATTAG-G--GTTGGTGGTGATAAGGATGATGAAGTTGTGAAGAGTGTGGGATC-TGATTT 516
Query 575 GGGGAAGGAGTTGTCTG-TGGAAGAGTCTGATCAGTTGTTTTCGATTGTGTTTGGGAATG 633
|||||||||||| || | ||||||||||||||||||||||||| || |||||||||||||
Sbjct 517 GGGGAAGGAGTTATC-GATGGAAGAGTCTGATCAGTTGTTTTCAATGGTGTTTGGGAATG 575
Query 634 AGGTTTCGAAAAGTGTTCTTGCTCAATGGACTAATCAAGGCATAAGATTTAGCCCTGATC 693
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 576 AGGTTTCGAAAAGTGTACTTGCTCAATGGACTAATCAGGGCATAAGGTTTAGCCCTGATC 635
Query 694 CTGAAACTACTATAGGATTAGTGCAGCATGAAGGTGGGCCCTGCGGTGTTTTAGCAGCAC 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CTGAAACTACTATAGGATTAGTGCAGCATGAAGGTGGGCCCTGCGGTGTTTTAGCAGCAC 695
Query 754 TACAAGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGTGACAGAGTAGCTTCCCCCT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TACAAGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGTGACAGAGTAGCTTCCCCAA 755
Query 814 GTATGGGTGTCTGGACATTATCTAAAGATCGTCATGTTGTGTCTGACTCCTTCTCTTCTG 873
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 756 GTATGGGTGTCTGGACATTATCTAAAGATCGTCATGTTGTATCTGATTCCTTCTCTTCTG 815
Query 874 TAACTGAAGAAGCAAAAACAAAGGCCCTTGTCAGAAGTATGTGTGAGATTCTATTTATGT 933
|||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 816 TAACCGAAGAAGCAAAAACAAGGGCCCTTGTTAGAAGCATGTGTGAGATTCTATTTATGT 875
Query 934 GTGGAGACAACAACCGCGCTGTAATAGCAAGTTTCACTAATTTTGAGGATTCCAGTAGTA 993
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 876 GTGGAAACAACAACCGCGCTGTAATAGCAAGTTTCACTAATTTTGAGGATTCCAGTACTA 935
Query 994 ATCAAAAAGATGAGGCAATGGCTGGTGGGCTCCCCATTGAATCTGCTTCAGATTTGCAGA 1053
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 936 ATCAGAAAGATGAGGCAATGGCTAGTGGGCTCCCCATTGAATCTGCTTCAGATTTGCAGA 995
Query 1054 AGATCTTAAGGTTCGAGACATTCACAACTCAAGCCAGTGCCCAAAATAAGCTAGAAGGCA 1113
||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 996 AGATCTTAAGGTTTGAGACATTCACTACTCAAGCCAGTGCCCTTAATAAGCTAGAAGGCA 1055
Query 1114 CAATAACTGCTTTTCAAAGTCGCATGGGTGCTTTGCTGTTCCTAATTTCTGCTTTACTCT 1173
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CAATAACTGCTTTCCAAAGTCGCATGGGTGCTTTGCTGTTCCTAATTTCTGCTTTACTCT 1115
Query 1174 CCCGAGGACTGGATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTG 1233
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1116 CCCGTGGACTGGATTCCGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTCACTG 1175
Query 1234 CACCATTTGGACATGCCTCCCAGGAAATTGTAAACCTGCTGCTGTGTGGAGAAGCGGTTC 1293
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1176 CACCATTTGGACATGCCTCCCAGGAAATTGTAAACCTACTGTTGTGTGGAGAAGCGGTTC 1235
Query 1294 CTAATGTATTTGATGGACGGATGGATCTTGGAGGCGGCATGTTTCTGAAAGGCATATCTA 1353
||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1236 CTAATGTGTTTGATGGAAGGATGGATCTTGGAGGCGGCATGTTTCTTAAAGGCATATCTA 1295
Query 1354 AGAATGTAGATGTGGGCTTCCTCACGTTGCTCGAGTCTCTCAACTTCTGCAAAGTCGGTC 1413
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1296 AGAATGTGGATGTGGGCTTCCTCACGTTGCTCGAGTCTCTCAATTTCTGCAAAGTCGGTC 1355
Query 1414 AGAATCTCAAATGTCCCAAATGGCCAATATGGGTTATTGGCAGTGAGTCTCATTACACCG 1473
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1356 AGAATCTCAAGTGTCCCAAATGGCCAATATGGGTTATTGGCAGCGAGTCTCATTACACCG 1415
Query 1474 TCTTGTTTGCACTTGACCCATCCGTCCAAGAAGAAAACGAACTTGAGCTGAGAGAGTCTC 1533
|| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1416 TCCTGTTTGCACTCGACCCATCCGTCCAAGAAGAAAACGTACTTGAGCTGAGAGAGTCTC 1475
Query 1534 AGATAAGAAGAGCTTTCGATGCAAGAGACCAAAGCGGAGGAGGAGGTTTCATAA-CTGTG 1592
||||||||||||||||||||||||||||| |||||||||||||||| ||||| | | |||
Sbjct 1476 AGATAAGAAGAGCTTTCGATGCAAGAGACGAAAGCGGAGGAGGAGGCTTCATCAGC-GTG 1534
Query 1593 GAGGCCTTTCACCAAGTTGCTCAGGAAACAAACATCAGACTCCCAATCA-AGAAGCTCGA 1651
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 1535 GAGGCCTTTCACCAAGTTGTTCAGGAAACAAACATCAGACTCCCAA-CAGAGAAGCTCAA 1593
Query 1652 CGACATCTGCGCCACGGGTTTCATCGTGTGGAGCGAGTTATGGCAAGTTATCTTGGAACT 1711
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1594 CGATATCTGCGCCACGGGTTTCATCGTGTGGAGCGAGTTATGGCAAGTGATCTTGGAGCT 1653
Query 1712 AGACCAAAATTTGGGAGGGATAAAAGATGCAACAGGACTGATGGGAAAGAAAGTGTTTGA 1771
||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 1654 AGACCGAAATTTGGGAGGGATAAAGGATTCAACAGGAATGATGGGAAAGAAAGTGTTTGA 1713
Query 1772 TATCTATCACTTCAACGGAATTGCCAAGTCCGATATAAACGGTGGTGGTCAAGCAATGGC 1831
||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 1714 TATTTATCACTTCAACGGGATTGCCAAATCCGATATAAACGGTGGTGGTCAATCAATGGC 1773
Query 1832 TGTGGAAGGTGGGATGGTTCCTATGCAAAGGCCAAGGCTGACAAAACTAAACGTATCGGT 1891
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1774 TGTGGAAGGTGGGACGGTTCCTATGCAGAGGCCAAGGCTGACAAAACTAAACGTAGCTGT 1833
Query 1892 TCCTCCAAAATGGACACCAGAAGAGTACATGACATGTGCACTGCCGCCGAGCAGCTCTGA 1951
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1834 TCCTCCAAAATGGACACCAGAAGAGTACATGTCATGTGCACTGCCGCCGAGCAGCTCTGA 1893
Query 1952 GAAAGACTCAGAAGTGAATCAGCCAAAACCGGTCCAACATGCACCACTGGTGGATTGTAT 2011
|||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||
Sbjct 1894 GAAAGACTCAGAAGTGAATCAGCCTAAACCGGTACAGCATGCACCATTGGTGGATTGTAT 1953
Query 2012 CAGAACTCGGTGGTCGCGTGCCGCTTGTAGCTGGTCTGGAGATCCTCCAAGTATAGTCTG 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 CAGAACTCGGTGGTCGCGTGCCGCTTGTAGCTGGTCTGGAGATCCTCCAAGTATAGTCTG 2013
Query 2072 AAGAATGTTGTATTATGAGAAAGCTTGAGCGTTTATTCTGGCTCATTGGATTCTAAAG-A 2130
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 2014 AAGAATGTTGTATTATGAGAAAGCTTGAGCGTT-ATTCTGGCTCGTTGGATTCTAAAGCA 2072
Query 2131 AAGAAAACGG-AAACTGCTGATCTGATTTGGCGGTT-A-ACACGCGTCTGAACTTTCTTT 2187
|| ||||||| ||||||||||| ||||||||||||| | || ||||||||||||||||||
Sbjct 2073 AAAAAAACGGGAAACTGCTGATTTGATTTGGCGGTTTAGACGCGCGTCTGAACTTTCTTT 2132
Query 2188 GCGTTGTCCGttttttt-CATGTTGTGTATTGATGTAGAATTTTTGTTATCTATTATTGA 2246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 GCGTTGTCCGTTTTTTTTCATGTTGTGTATTGATGTAGAATTTTTGTTATCTATTATTGA 2192
Query 2247 ACATTATTGAGACAAATGAATATTTCAATTGTTGGATAAAATTGCTTTCAATAACATTGA 2306
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2193 ACATTATTGAGACAAATGAATATTTTAATTGTTGGATATAATTGCTTTCAATAACATTGA 2252
Query 2307 TC 2308
||
Sbjct 2253 TC 2254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87379022030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5