BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43700.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473775 jgi|Araly1|473775|fgenesh2_kg.1__3729__AT1G43700.1 1844 0.0
> Ahg473775 jgi|Araly1|473775|fgenesh2_kg.1__3729__AT1G43700.1
Length=1285
Score = 1844 bits (998), Expect = 0.0
Identities = 1190/1276 (93%), Gaps = 40/1276 (3%)
Strand=Plus/Plus
Query 8 CCTACTTAGTACTTACCTGCCCCTCTCGACAAAATTTCTTTTGTACTTTCACATTTCTCT 67
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 CCTACTTAGTACTTACCTG-CCCTCTCGACAAAATTTCTTCTGTACTTTCACATTTCTGT 59
Query 68 GTAATAAACTCGGTAGGTTTGCGAAAACCTCGCCGCCGGGaaaaaaaaaaaTCAATGGAA 127
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAAT-CTCTCGGTAGGTTTGTGAAAACCTCGCCGCCGGGAAAAAAAAAAATCAATGGAA 118
Query 128 GGAGGAGGAAGAGGACCAAATCAAACGATTCTCAGTGAAATAGAACATATGCCTGAAGCT 187
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGAGGA-G--GAGGACCAAATCAAACGATTCTCAGTGAAATAGAACATATGCCTGAAGCT 175
Query 188 CCACGTCAACGTATCTCTCATCACCGTCGAGCTCGCTCTGAAACCTTCTTCTCCGGCGAA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CCACGTCAACGTATCTCTCATCACCGTCGAGCTCGCTCTGAAACCTTCTTCTCCGGCGAA 235
Query 248 TCAATCGACGATCTCCTCTTATTCGATCCTTCCGATATCGATTTCTCTTCTCTAGACTTC 307
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 236 TCAATCGACGATCTCCTCTTATTCGATCCTTCTGATATCGATTTCTCTTCCCTAGACTTC 295
Query 308 CTCAACGCTCCACCACCACCACAACAATCACAACAACAACCGCAAGCTTCTCCCATGTCC 367
||||| ||| |||||| | | || | |||||||||||| ||||||||||| ||||||
Sbjct 296 CTCAATGCT---CCACCA-C-C-AC-A--ACAACAACAACCACAAGCTTCTCCGATGTCC 346
Query 368 GTTG----A--TTCGGAAGAAACCTCATCGAACGGTGTTGTTCCTCCTAATTCTCTTCCT 421
|||| | ||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 347 GTTGATTCACCTTCTGAAGAAACTTCATCCAACGGTGTTGTTCCTCCTAACCCTCTTCCT 406
Query 422 CCAAAACCCGAAGCTAGATTCGGTCGCCATGTTCGTAGCTTCTCGGTTGATTCCGATTTC 481
|| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 407 CCGAAACCCGAAGCTCGATTCGGTCGCCATGTTCGTAGCTTCTCGGTTGATTCAGATTTC 466
Query 482 TTCGATGATTTGGGTGTTACTGAGG-A-GA-A-G-T------T-TATAGCTACAAGTTCA 529
||||||||||| || |||||||||| | | | | | | | ||||||| ||||||
Sbjct 467 TTCGATGATTTAGGAGTTACTGAGGAACAATATGTTGGGAAATCTTTAGCTACGAGTTCA 526
Query 530 GGAGAGAAGAAGAAAGGGAATCATCATCATAGCAGGAGTAATTCTATGGATGGAGAGATG 589
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 527 GGAGAGAAGAAGAAAAGGAATCATCATCATAACAGGAGTAATTCTATGGATGGAGAGATG 586
Query 590 AGTTCGGCGTCGTTTAATATCGAATCGATTTTAGCTTCTGTGAGTGGTAAAGATAGTGGG 649
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 587 AGTTCGGCGTCGTTTAATATCGAATCGATTTTAGCTTCTGTTAGTGGTAAAGATAGTGGG 646
Query 650 AAGAAGAATATGGGTATGGGTGGTGATAGACTTGCTGAGCTTGCTTTGCTTGATCCTAAA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AAGAAGAATATGGGTATGGGTGGTGATAGACTTGCTGAGCTTGCTTTGCTTGATCCTAAA 706
Query 710 AGAGCTAAAAGGATTTTAGCGAATAGACAATCTGCGGCGAGGTCGAAAGAGAGGAAGATT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGAGCTAAAAGGATTTTAGCGAATAGACAATCTGCGGCGAGGTCGAAAGAGAGGAAGATT 766
Query 770 AGGTATACTGGTGAGTTAGAGAGGAAGGTTCAGACACTTCAGAATGAAGCTACTACATTG 829
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 767 AGGTATACTGGTGAGTTGGAGAGGAAGGTTCAGACACTTCAGAATGAAGCAACTACATTG 826
Query 830 TCTGCTCAAGTCACTATGTTACAGAGAGGAACATCAGAGCTGAACACTGAAAATAAACAC 889
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 827 TCTGCTCAAGTCACTATGTTGCAGAGAGGAACGTCAGAGCTGAACACTGAAAATAAACAC 886
Query 890 CTCAAAATGCGGCTTCAAGCTTTAGAGCAACAAGCTGAACTTAGGGATGCTTTGAATGAA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CTCAAAATGCGGCTTCAAGCTTTAGAGCAACAAGCTGAACTTAGGGATGCTTTGAATGAA 946
Query 950 GCGCTGCGGGATGAACTGAACCGACTTAAGGTGGTAGCTGGAGAAATTCCTCAGGGGAAT 1009
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 947 GCGCTGCGGGATGAACTGAACCGCCTTAAGATGGCAGCTGGAGAAATTCCTCAGGGGAAT 1006
Query 1010 GGAAATTCTTACAACCGTGCTCAATTCTCATCTCAGCAATCGGCAATGAATCAGTTTGGG 1069
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GGAAATTCATACAACCGTGCTCAATTCTCATCTCAGCAATCGGCAATGAATCAGTTTGGG 1066
Query 1070 AACAA-AACGAACCAACAGATGAGTACAAACGGGCAGCCATCGCTCCCAAGCTACATGGA 1128
||||| || |||||| |||||||| ||||||||||||||||| | |||||||| ||||||
Sbjct 1067 AACAACAA-GAACCAGCAGATGAGCACAAACGGGCAGCCATCACACCCAAGCTTCATGGA 1125
Query 1129 TTTCACCAAGAGAGGCTGAGTTCGTGTCACCTATATATGTTTGCTGAGTTATAAATACGT 1188
|||||||||||||||||||||||||| ||||| || ||||| |||||||||| |||||||
Sbjct 1126 TTTCACCAAGAGAGGCTGAGTTCGTGGCACCTCTAAATGTTGGCTGAGTTATCAATACGT 1185
Query 1189 TATATTCATTTCGGGCTGCAATATTTGATGTATGTAAAAAGTATGTATGTATCCATGTAT 1248
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 1186 TATATTCATTTCGGGCTGCA-TATTTGATGTATGTAA---GTATGTATGTATGCATGTAT 1241
Query 1249 -AATGGCTTTTGTGTT 1263
|||| ||||||||||
Sbjct 1242 TAATG-CTTTTGTGTT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5