BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43710.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922864 jgi|Araly1|922864|scaffold_104145.1 1267 0.0
> Ahg922864 jgi|Araly1|922864|scaffold_104145.1
Length=1429
Score = 1267 bits (686), Expect = 0.0
Identities = 776/820 (95%), Gaps = 4/820 (0%)
Strand=Plus/Plus
Query 738 GTTGATACGCTTATGTCAGGGGAGATTGATTGTGATGATTTGAGGAAGAAGTTGTTGGCT 797
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 612 GTTGATACGCTTATTTCGGGGGAGATTGATTGTGATGATTTTAGGAAGAAGTTGTTGGCT 671
Query 798 AATAAAGATAAACCGGCGATTCTTAATGTTAACATAGGAACGACGGTTAAAGGAGCTGTT 857
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AATAAAGATAAACCGGCCATTCTTAATGTTAACATAGGAACGACGGTTAAAGGAGCTGTT 731
Query 858 GATGATCTTGACCTTGTTATCAAAACTCTTGAAGAGTGTGGTTTCTCACATGATAGGTTC 917
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 732 GATGATCTTGACCTTGTAATCAAAACTCTTGAAGAGTGTGGTTTCTCACATGACAGGTTC 791
Query 918 TATATTCATTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTTGTCAAACGTGCACCG 977
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 792 TATATTCACTGTGATGGAGCTCTGTTTGGACTTATGATGCCTTTTGTCAAACGTGCACCA 851
Query 978 AAAGTGACGTTT-AATAAACCGATAGGGAGTGTGAGTGTATCGGGCCACAAATTTGTCGG 1036
||||| || ||| |||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 852 AAAGTCAC-TTTCAATAAACCGATAGGAAGTGTGAGTGTGTCGGGCCACAAATTTGTAGG 910
Query 1037 GTGTCCAATGCCATGTGGTGTTCAGATAACAAGAATGGAACATATCAAAGTCCTCTCCAG 1096
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 911 GTGTCCAATGCCTTGTGGTGTTCAGATAACAAGAATGGAACACATCAAAGTCCTCTCCAA 970
Query 1097 TAACGTTGAGTACCTTGCTTCAAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGC 1156
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 971 TAACGTTGAGTACCTCGCTTCGAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGC 1030
Query 1157 TCCTTTGTTCCTCTGGTACACCTTAAACAGGAAAGGTTACAAAGGATTCCAGAAAGAAGT 1216
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1031 TCCTTTGTTCCTTTGGTACACCTTAAACAGGAAAGGGTACAAAGGATTCCAGAAAGAAGT 1090
Query 1217 TCAGAAATGCTTGAGAAACGCGCATTACCTCAAAGACCGACTTCGTGAAGCTGGGATTAG 1276
|||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1091 TCAGAAATGCTTGAGAAATGCGCATTACCTCAAAGACAGACTCCGTGAAGCTGGGATCAG 1150
Query 1277 CGCCATGCTTAATGAGCTTAGCAGCACTGTGGTCTTTGAACGGCCTAAAGATGAAGAGTT 1336
||||||||||||||||||||||||||| |||||||||||||| || || |||||||| ||
Sbjct 1151 CGCCATGCTTAATGAGCTTAGCAGCACCGTGGTCTTTGAACGCCCCAAGGATGAAGAATT 1210
Query 1337 TGTTAGAAGGTGGCAGCTTGCTTGCCAAGGTGATATAGCTCATGTGGTGGTTATGCCAAG 1396
|||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1211 TGTTAGAAGGTGGCAGCTCGCTTGCCAAGGCGATATTGCTCATGTGGTTGTTATGCCAAG 1270
Query 1397 TGTTACAATCGAGAAGCTTGATAATTTCCTGAAAGACCTTGTCAAACACAGATT-GATCT 1455
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1271 TGTTACAATCGAGAAGCTCGATAATTTCCTGAAAGACCTTGTCAAACACAGATCAG-TCT 1329
Query 1456 GGTACGAGGATGGATCTCAGCCTCCTTGCCTTGCATCGGAGGTAGGAACCAACAACTGCA 1515
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1330 GGTACGAGGACGGATCTCAGCCTCCGTGCCTTGCATCAGAGGTAGGAACCAACAACTGCA 1389
Query 1516 TCTGTCCAGCTCACAAGTGACGGCACCATTTCTCATTTGT 1555
||||||||||||||||||||||||||||||| |||| |||
Sbjct 1390 TCTGTCCAGCTCACAAGTGACGGCACCATTTTTCATATGT 1429
Score = 857 bits (464), Expect = 0.0
Identities = 577/628 (92%), Gaps = 21/628 (3%)
Strand=Plus/Plus
Query 67 CAGATTCCTTTAAAACAACAATGGTTGGATCTTTGGAATCTGATCAAACTCTTTCAATGG 126
||||||||||| | |||||||||||| |||| |||||||||||| | || ||||||
Sbjct 4 CAGATTCCTTT---ATTACAATGGTTGGAGCTTTCGAATCTGATCAATCCCTAACAATGG 60
Query 127 CCACCTTAATCGAAAAACTCGACATCTTATCTGACGACTTCGATCCAACCGCCGTAGTCA 186
||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 CCAACTTAATCGAAAAAATCCACATCTTATCTGACGACTTCGATCCAACCGCTGTACTCA 120
Query 187 CCGAACCGTTACCTCCTCCGGTAACTAATGGAATCGGAGCTGATAAaggaggaggaggag 246
|||||||||||||| | | | | | | ||||||| | || ||||||||||
Sbjct 121 CCGAACCGTTACCT--T-C--T--C----CG-A-CGGAGCT--T-AA--CGGAGGAGGAG 162
Query 247 gagAAAGAGAGATGGTTCTCGGTAGGAATATACACACAACGTCACTCGCTGTAACGGAAC 306
|||| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 163 GAGACAGAGAAATGGTTCTCGGTAGGAATATACACACGACGTCACTTGCTGTTACGGAAC 222
Query 307 CGGAGGTTAACGATGAATTCACCGGAGATAAAGAAGCTTATATGGCTAGTGTTCTTGCTC 366
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGAGGTTAACGATGAATTCACCGGAGATAAAGAAGCTTATATGGCTAGTGTTCTTGCTC 282
Query 367 GTTACCGGAAAACTTTGGTTGAACGAACCAAAAACCATTTAGGTTATCCTTATAACTTGG 426
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 283 GTTACCGGAAAACTTTGGTTGAACGAACCAAATTTCATTTAGGTTATCCTTATAATTTGG 342
Query 427 ATTTCGACTATGGTGCGCTTGGTCAGTTACAACATTTTTCGATTAATAATCTTGGAGATC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 ATTTCGACTATGGTGCGCTTGGTCAGTTACAACATTTTTCGATTAATAATCTTGGAGATC 402
Query 487 CGTTTATTGAAAGTAACTATGGTGTACACTCAAGACCTTTTGAAGTTGGTGTGTTGGATT 546
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CGTTTATTGAGAGTAACTATGGTGTACACTCAAGACCTTTTGAAGTTGGTGTGTTGGATT 462
Query 547 GGTTTGCTCGTCTTTGGGAGATTGAGAGAGATGATTATTGGGGTTACATTACCAATTGTG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GGTTTGCTCGTCTTTGGGAGATTGAGAGAGATGATTATTGGGGTTACATTACCAATTGTG 522
Query 607 GTACTGAAGGCAACCTTCATGGCATTTTAGTCGGGAGGGAGATGTTTCCGGATGGGATAT 666
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 523 GTACTGAAGGCAACCTTCATGGCATTTTAGTTGGGAGGGAGATGTTTCCTGATGGGATTT 582
Query 667 TGTATGCGTCGCGTGAATCGCATTACTC 694
||||||||||||| ||||||||||||||
Sbjct 583 TGTATGCGTCGCGGGAATCGCATTACTC 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5