BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43720.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897008 jgi|Araly1|897008|Al_scaffold_0005_974 717 0.0
Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608 549 1e-155
Ahg906119 jgi|Araly1|906119|Al_scaffold_0003_3247 272 3e-72
Ahg942366 jgi|Araly1|942366|scaffold_602910.1 268 4e-71
Ahg480397 jgi|Araly1|480397|fgenesh2_kg.3__3098__AT3G30520.1 268 4e-71
Ahg942982 jgi|Araly1|942982|scaffold_603526.1 215 5e-55
Ahg930940 jgi|Araly1|930940|scaffold_303397.1 215 5e-55
Ahg948313 jgi|Araly1|948313|scaffold_800200.1 150 2e-35
Ahg936855 jgi|Araly1|936855|scaffold_501046.1 148 5e-35
Ahg941964 jgi|Araly1|941964|scaffold_602508.1 145 7e-34
Ahg936220 jgi|Araly1|936220|scaffold_500411.1 111 7e-24
Ahg922892 jgi|Araly1|922892|scaffold_104173.1 93.5 3e-18
> Ahg897008 jgi|Araly1|897008|Al_scaffold_0005_974
Length=1116
Score = 717 bits (388), Expect = 0.0
Identities = 600/699 (86%), Gaps = 27/699 (4%)
Strand=Plus/Plus
Query 1 ATGCAACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTCTGCTCGTCAA 60
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 118 ATGCAACGATGTTTCGTATTACATGATGTTCAATCACAATCTGAACACTCTGCTCGTCAA 177
Query 61 AGAAGAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGAC 120
|||||||||||||| || ||||||||| |||||||||||| || | ||| ||||||||
Sbjct 178 AGAAGAGAACAATTAATACACGAGCATACAGTTGATGAAGAGGGCCATGATGACTCAGAC 237
Query 121 AGTGATAGTGGTAACATGCCAGAAGCCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTG 180
| |||||||||| || || || || | |||||||||| |||||||||||||||||||||
Sbjct 238 ACTGATAGTGGTGACTTGGCACAAACAAAGGTTCCTGATACGCAAGAAGAAGAAGAAGTG 297
Query 181 TATCGTGTTACCATTGATGATGATG-AA---TC--A-A--CCGCTAGACGTGGAAG-TAG 230
||||||||||| ||||||||||||| || || | | ||||| | |||| |
Sbjct 298 TATCGTGTTACTATTGATGATGATGAAACGTTCAAATATTCCGCT--TC-CCGAAGCCAA 354
Query 231 TGCACAAAGATCT-GGAGGAAGCTCACTAGTTTCTATAGGAAGTGGTTCACGAAGAAGTC 289
||| | |||||| ||| |||||||| ||||||||| |||||| |||||||| ||| ||
Sbjct 355 TGC-C-GAGATCTGGGA-GAAGCTCAAGAGTTTCTATTGGAAGTTGTTCACGAGGAAATC 411
Query 290 ATAGACG-ACAATCCTTTGAAACAACAATACAAGACAGCATCACTGGCT-TCAGAGAATT 347
||| || | ||||||||||||||||||||||||||| |||| |||||| | ||||||||
Sbjct 412 GTAGGCGAAAAATCCTTTGAAACAACAATACAAGACACCATCGCTGGCTAT-AGAGAATT 470
Query 348 CCAACGACAAAGTTTTCAACAACTTCGTCC-TGGTGCTTTTGATCAAGATGATTACGATG 406
|||| |||||||||||||||||||||| || ||||| |||||| ||||||||||||||||
Sbjct 471 CCAAAGACAAAGTTTTCAACAACTTCG-CCTTGGTGGTTTTGACCAAGATGATTACGATG 529
Query 407 AATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCCTAAGCACACTAGATTTC 466
||||||||||||||||||||||||| || || ||| | ||||| |||||||| ||||||
Sbjct 530 AATTTAAAAAGGCGGAAGCGATATTCATTGCACTAGACCTTCCCAAGCACACAAGATTTT 589
Query 467 ATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCGTAAGTATTTGATTGATA 526
||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 590 ATTGGGCATGCATTAATGCACTTAAAGAACTAGTATTTTGGCGTAAATATTTCATTGACA 649
Query 527 TAACT-GCAAGCACCGACGAGGATAAGGTCCAACTGTTAGAAGCTATGACTGGTGTTTCA 585
|| || | ||||| ||||||||||| | ||||| |||||||||||||||||||| |||
Sbjct 650 TATCTAG-AAGCAGTAACGAGGATAAGCTACAACTATTAGAAGCTATGACTGGTGTCTCA 708
Query 586 CGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCAAGCCATTCATTTGGGAGTCC-ACA 644
|| || ||||||||||||||||||||||||||| || |||||||||||||||| || | |
Sbjct 709 CGAAAAAACCAAGATGTGCCAAAACAGTTAGGTCCATGCCATTCATTTGGGAGCCCGA-A 767
Query 645 TTCAGGAGGTATATCATCTGGAAGTCCATCCTCTGTGGG 683
|| ||||||| |||||| |||||||||||| ||| ||||
Sbjct 768 TTTAGGAGGTCTATCATATGGAAGTCCATCTTCT-TGGG 805
> Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608
Length=1227
Score = 549 bits (297), Expect = 1e-155
Identities = 517/616 (84%), Gaps = 44/616 (7%)
Strand=Plus/Plus
Query 1 ATGCAACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTCTGCTCGTCAA 60
|||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 277 ATGCAACGATGTTTCGTCTTATATGATGTTCAATCACAATCTCAACATTCTGCTCGCCAA 336
Query 61 AGAAGAGAACAATTGATCCACGAG----C-A-TG--G-AGTTG-ATG-AAGAAG-GTG-- 106
|||||||||||||||||| ||||| | | || | || || | | |||||| | |
Sbjct 337 AGAAGAGAACAATTGATCAACGAGCATCCAATTGATGAAGATGAAAGAAAGAAGAGAGCC 396
Query 107 AAGATTACTCAGACAG-TGATAGTGGTAACATGCCAGAAGC-CGAGGTTCCTGAAACGCA 164
||||| |||||||| | |||||||||| || |||| || | | | |||||||| |||||
Sbjct 397 AAGATGACTCAGAC-GCTGATAGTGGTGACGTGCCTCAAACAC-AAGTTCCTGAGACGCA 454
Query 165 AGAAGAAGAAGAAGTGTATCGTGTTACCA-T--TGATGATG--A--T--G----A----- 206
|||||||||||||||||| |||||||| | | |||||||| | | | |
Sbjct 455 AGAAGAAGAAGAAGTGTAACGTGTTACAATTGATGATGATGAAACGTAGGCTAAATTTGC 514
Query 207 A-TCAACCGCTAGACGTGGAAGTAGTGCACAAAGATCT-GGAGGAAGCTCACTAGTTTCT 264
| ||||||||||||||||| |||||| ||||||||||| ||| ||||| || |||||||
Sbjct 515 AGTCAACCGCTAGACGTGGGAGTAGTTCACAAAGATCTGGGA-GAAGCGCAAGAGTTTCT 573
Query 265 ATAGGAAGTGGTTCACGA-AGAAGTCATAGACGACAATCCTTTGAAACAACAATACAAGA 323
|| ||||||||||||||| ||| || ||| |||||||| ||||| ||||||||||||||
Sbjct 574 ATTGGAAGTGGTTCACGAGGGAA-TCGTAGGCGACAATCGTTTGAGACAACAATACAAGA 632
Query 324 CAGCATCACTGGCTTCAGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTCCTGGTGC 383
| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TACCATTGCTGGATACAGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTCCTGGTGG 692
Query 384 TTTTGATCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAA 443
|||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||| |
Sbjct 693 TTTTGACCAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAGA 752
Query 444 TCTTCCTAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATT 503
||||| |||||||| |||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 753 CCTTCCCAAGCACACAAGATTT--T-GGGCATGCATTAATGCACTTAAGGAACTAGTATT 809
Query 504 TTGGCGTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTT 563
||||||||||||||| ||||| ||| ||| ||||| ||||||||||| | ||||| ||
Sbjct 810 TTGGCGTAAGTATTTCATTGACATATCTGGAAGCAGTAACGAGGATAAGCTACAACTATT 869
Query 564 AGAAGCTATGACTGGT 579
||||||||||||||||
Sbjct 870 AGAAGCTATGACTGGT 885
> Ahg906119 jgi|Araly1|906119|Al_scaffold_0003_3247
Length=552
Score = 272 bits (147), Expect = 3e-72
Identities = 193/215 (90%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 295 CGACAATCCTTTGAAACAACAATACAAGACAGCATCACTGGCTTCAGAGAATTCCAACGA 354
|||||||| ||||| |||||||||||||| | |||| |||||| ||||||||||||||||
Sbjct 168 CGACAATCGTTTGAGACAACAATACAAGATACCATCGCTGGCTACAGAGAATTCCAACGA 227
Query 355 CAAAGTTTTCAACAACTTCGTCCTGGT-GCTTTTGATCAAGATGATTACGATGAATTTAA 413
|||||||||||||||||||||||| || | |||||| ||||||||||| |||||||| ||
Sbjct 228 CAAAGTTTTCAACAACTTCGTCCTAGTTGGTTTTGACCAAGATGATTATGATGAATTGAA 287
Query 414 AAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCCTAAGCACACTAG-ATTTCATTGGG 472
|||||||||||||||||| || |||||| | ||||||||||||| ||| |||| ||||||
Sbjct 288 AAAGGCGGAAGCGATATTCATTGCGCTAGACCTTCCTAAGCACA-TAGGATTTTATTGGG 346
Query 473 CATGCATTAATGCACTTAAGGAGCTAGTATTTTGG 507
||||||||||| ||| |||||| ||||||||||||
Sbjct 347 CATGCATTAATACACATAAGGAACTAGTATTTTGG 381
> Ahg942366 jgi|Araly1|942366|scaffold_602910.1
Length=370
Score = 268 bits (145), Expect = 4e-71
Identities = 204/233 (88%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTT-C 448
|||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||| |
Sbjct 113 TCAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTC 172
Query 449 CTAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGC 508
| || |||||||||||| ||||| ||||||||| | |||| ||||||| |||||||||||
Sbjct 173 CAAA-CACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGC 231
Query 509 GTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAGAAG 568
|||||||||| ||||| ||| ||| ||||||||| ||||||||| | ||||||||||||
Sbjct 232 GTAAGTATTTCATTGACATAGCTGAAAGCACCGATGAGGATAAGCTACAACTGTTAGAAA 291
Query 569 CTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCA 621
||||||| ||||||| ||| |||||| || ||||| || ||||| ||||||||
Sbjct 292 CTATGACGGGTGTTTTACGGAACAACAAAAATGTGTCACAACAGGTAGGTTCA 344
> Ahg480397 jgi|Araly1|480397|fgenesh2_kg.3__3098__AT3G30520.1
Length=1101
Score = 268 bits (145), Expect = 4e-71
Identities = 174/188 (93%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 322 GACAGCATCACTGGCT-TCAGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTCCTGG 380
|||| |||| |||||| | ||||||||||||||||||||||||||| ||||||| |||||
Sbjct 448 GACACCATCGCTGGCTAT-AGAGAATTCCAACGACAAAGTTTTCAATAACTTCGCCCTGG 506
Query 381 TGCTTTTGATCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCT 440
|| |||||| ||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 507 TGGTTTTGACCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCACT 566
Query 441 AAATCTTCCTAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGT 500
||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 567 AAATCTTCCCAAGCACACTAGATTTTATTGGGCATGCATTAATGCACTTAAAGAGCTAGT 626
Query 501 ATTTTGGC 508
||||||||
Sbjct 627 ATTTTGGC 634
Score = 134 bits (72), Expect = 2e-30
Identities = 111/130 (85%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 79 CACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGACAGTGATAGTGGTAAC-AT 137
|||||||||| |||||||||||| || | ||| ||||| ||| ||||| |||| || |
Sbjct 199 CACGAGCATGCAGTTGATGAAGAGGGCCATGATGACTCATACACTGATAATGGTGACTTT 258
Query 138 GCCAGAAGCCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTGTATCGTGTTACCATTGA 197
| || || | |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 259 G-CACAAACAAAGGTTCCTGAGACGCAAGAAGAAGAAGAAGTGTATCGTGTTACTATTGA 317
Query 198 TGATGATGAA 207
||||||||||
Sbjct 318 TGATGATGAA 327
Score = 128 bits (69), Expect = 7e-29
Identities = 150/187 (80%), Gaps = 13/187 (7%)
Strand=Plus/Plus
Query 761 TGGAAAACACCA-CCAA--ATGCACAGT-GGGACACGCCACCAAATGTTCCACAGTGGGG 816
|||| ||||||| |||| |||||||| |||| || ||| ||||| |||||| |||||
Sbjct 765 TGGAGAACACCACCCAATGTTGCACAGTGGGGA-ACAACACAAAATGCTCCACAATGGGG 823
Query 817 ATCATCACCAAAGGCTCCACAATGGCGGCAAACA-GA-AAAAT-TTTAACAAGGTGGTTC 873
| || |||||| |||||||| ||| || |||| | |||| | || | |||| ||
Sbjct 824 AACACCACCAACTGCTCCACAGTGG-GG--AACACCACCAAATACTCCAC-A-GTGGGTC 878
Query 874 AAGCGGAACGACTCCAACAAATGTTCAATATGGATTTTCAGTTGGAAGTCAAGGAGATTG 933
|| |||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 879 AACCGGAACAACTCCAACAAATGTTCAATATGGATTTTCAGTTGGAGGCCAAGGAGATGG 938
Query 934 TGTAACA 940
|| ||||
Sbjct 939 TGCAACA 945
Score = 80.5 bits (43), Expect = 2e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1 ATGCAACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAAC 46
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 151 ATGCAACGATGTTTCGTATTACATGATGTTCAATCACAATCTCAAC 196
> Ahg942982 jgi|Araly1|942982|scaffold_603526.1
Length=356
Score = 215 bits (116), Expect = 5e-55
Identities = 200/241 (83%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 388 GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT 446
||| |||||||||||||||||||||||||||||||||| |||||| || |||||| | ||
Sbjct 93 GATCCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTCATTGCGCTAGACCT 152
Query 447 TCCTAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAAGGAGCTAGTATTTT 505
|||||| | ||||||||| | ||| ||| ||| || | |||||||||||| || ||| |
Sbjct 153 TCCTAAATATACTAGATTTTACTGGACATACAT-AAGTACACTTAAGGAGCAAGCATTAT 211
Query 506 GGCGTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAG 565
||||||||||||| ||||| ||| ||| ||||||||| || ||||| | |||||| |||
Sbjct 212 GGCGTAAGTATTTCATTGACATAGCTGAAAGCACCGATGAAAATAAGCTACAACTGCTAG 271
Query 566 AAGCTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCAAGCC 625
|| |||| |||||||||| ||| || ||| || || ||| | |||| |||||||||| ||
Sbjct 272 AAACTATAACTGGTGTTTTACGGAATAACGAATATATGCGAGAACAATTAGGTTCAAACC 331
Query 626 A 626
|
Sbjct 332 A 332
> Ahg930940 jgi|Araly1|930940|scaffold_303397.1
Length=356
Score = 215 bits (116), Expect = 5e-55
Identities = 200/241 (83%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 388 GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT 446
||| |||||||||||||||||||||||||||||||||| |||||| || |||||| | ||
Sbjct 93 GATCCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTCATTGCGCTAGACCT 152
Query 447 TCCTAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAAGGAGCTAGTATTTT 505
|||||| | ||||||||| | ||| ||||||| || | |||||||||||| || ||| |
Sbjct 153 TCCTAAATATACTAGATTTTACTGGACATGCAT-AAGTACACTTAAGGAGCAAGCATTAT 211
Query 506 GGCGTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAG 565
||||||||||||| ||||| ||| ||| ||||||||| || ||||| | |||||| |||
Sbjct 212 GGCGTAAGTATTTTATTGACATAGCTGAAAGCACCGATGAAAATAAGCTACAACTGCTAG 271
Query 566 AAGCTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCAAGCC 625
|| ||| |||||||||| ||| || ||| || || ||| | |||| |||||||||| ||
Sbjct 272 AAATTATAACTGGTGTTTTACGGAATAACGAATATATGCGAGAACAATTAGGTTCAAACC 331
Query 626 A 626
|
Sbjct 332 A 332
> Ahg948313 jgi|Araly1|948313|scaffold_800200.1
Length=249
Score = 150 bits (81), Expect = 2e-35
Identities = 117/135 (87%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCC 449
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| |
Sbjct 112 TCAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAAACCTTTC 171
Query 450 TAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCG 509
||| || ||||||||| ||||| ||||||| | | |||| || |||| |||| ||| |||
Sbjct 172 TAAACATACTAGATTTTATTGGACATGCATCAGTACACTCAAAGAGCAAGTACTTTAGCG 231
Query 510 TAAGTATTTGATTGA 524
||||||||| |||||
Sbjct 232 TAAGTATTTCATTGA 246
> Ahg936855 jgi|Araly1|936855|scaffold_501046.1
Length=242
Score = 148 bits (80), Expect = 5e-35
Identities = 126/148 (85%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 388 GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT 446
||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||
Sbjct 96 GATCCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTTATTGCGCTAGACCT 155
Query 447 TCCTAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAA-GGAGCTAGTATTT 504
|||||| | ||||||||| | || ||||||| || | ||||||| ||||| || |||
Sbjct 156 TCCTAAATATACTAGATTTTACAGGACATGCAT-AAGTACACTTAAAGGAGCAAGCATTA 214
Query 505 TGGCGTAAGTATTTGATTGATATAACTG 532
|||||||||||||| ||||| ||| |||
Sbjct 215 TGGCGTAAGTATTTCATTGACATAGCTG 242
> Ahg941964 jgi|Araly1|941964|scaffold_602508.1
Length=247
Score = 145 bits (78), Expect = 7e-34
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCC 449
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| |
Sbjct 110 TCAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAAACCTTTC 169
Query 450 TAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCG 509
||| || ||||||||| ||||| |||| || | | |||| || |||| |||| ||| |||
Sbjct 170 TAAACATACTAGATTTTATTGGACATGTATCAGTACACTCAAAGAGCAAGTACTTTAGCG 229
Query 510 TAAGTATTTGATTGA 524
||||||||| |||||
Sbjct 230 TAAGTATTTCATTGA 244
> Ahg936220 jgi|Araly1|936220|scaffold_500411.1
Length=213
Score = 111 bits (60), Expect = 7e-24
Identities = 80/90 (89%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCC 449
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| |
Sbjct 112 TCAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCGCTAAACCTTTC 171
Query 450 TAAGCACACTAGATTTCATTGGGCATGCAT 479
||| || ||||||||| ||| | |||||||
Sbjct 172 TAAACATACTAGATTTTATTAGACATGCAT 201
> Ahg922892 jgi|Araly1|922892|scaffold_104173.1
Length=199
Score = 93.5 bits (50), Expect = 3e-18
Identities = 79/93 (85%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 388 GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT 446
||| ||||||||||||||||||||||||||||| |||| |||||| || ||| || | ||
Sbjct 95 GATCCAAGATGATTACGATGAATTTAAAAAGGCAGAAGAGATATTCATTGCGTTAGACCT 154
Query 447 TCCTAAGCACACTAGATTTCATTGGGCATGCAT 479
|||||| || ||||||||| | | | |||||||
Sbjct 155 TCCTAAACATACTAGATTTTACTAGACATGCAT 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5