BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43722.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942705 jgi|Araly1|942705|scaffold_603249.1 815 0.0
Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609 477 6e-134
> Ahg942705 jgi|Araly1|942705|scaffold_603249.1
Length=2035
Score = 815 bits (441), Expect = 0.0
Identities = 534/580 (92%), Gaps = 2/580 (0%)
Strand=Plus/Plus
Query 31 GAAAGAATTGAACTGTGGAATTTGGAAAATAAACAATTTGAAGAGTTAGTGATTCAACCA 90
|||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCA 1220
Query 91 GCGTTGAATTATTATGACCGATATTTTCAAAGAGCACCAGTCCAAATTGATAGAGGTTTG 150
|| |||| ||||||||| |||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1221 GCTTTGACTTATTATGATCGATATTTTCAAAGAGCACCGGTCCAAACCGATGGAGGTTTG 1280
Query 151 GGATGGAGAAATATATGGCGTCGACTACAGCAAGATGCTGCTGCTTGTCTTCAGTTATTA 210
|||||||||||||| ||||||||| |||| ||||||| |||||| |||||||||||||||
Sbjct 1281 GGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATTA 1340
Query 211 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAAACAAATTATGATCTT 270
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||
Sbjct 1341 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATATTGCAGACAAATTACGGTCTA 1400
Query 271 CAGCCTACATTGAATATAAGTATTGAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGG 330
|| || ||| | |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1401 CAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGA 1460
Query 331 CACAATGAAGTTTATAGAGATGTTGGTTTAAGATTTGG-ACGAAATCAAGAAACTGTGCA 389
|||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1461 CACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGGCA-GAAATCAAGAAACTGTGCA 1519
Query 390 AAGAAAATTTAGAGAAGTTCTTACGGCAACTGAATTATTAGCATGTGATTATATTAGAAC 449
||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1520 GAGAAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAAC 1579
Query 450 TCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCAAAGATATTG 509
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1580 TCCAACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCGGAGATATTG 1639
Query 510 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGTACTCATGTATGCGTAAAAGTAAA 569
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1640 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCGTAAAAGTAAA 1699
Query 570 GCCTGACTTACAGGGAATGTATTGGAATCGACACGATAAT 609
|| ||| ||||| |||||||||||||||||||||||||||
Sbjct 1700 GCTTGAGTTACAAGGAATGTATTGGAATCGACACGATAAT 1739
> Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609
Length=813
Score = 477 bits (258), Expect = 6e-134
Identities = 313/340 (92%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 214 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAAACAAATTATGATCTTCAG 273
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||
Sbjct 1 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAA 60
Query 274 CCTACATTGAATATAAGTATTGAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGGCAC 333
|| ||| | ||||| || |||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 CCAACACTAAATATTAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCAC 120
Query 334 AATGAAGTTTATAGAGATGTTGGTTTAAGATTTGGAC-GAAATCAAGAAACTGTGCAAAG 392
||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 121 AATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCAGAG 179
Query 393 AAAATTTAGAGAAGTTCTTACGGCAACTGAATTATTAGCATGTGATTATATTAGAACTCC 452
||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 180 AAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCC 239
Query 453 GACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCAAAGATATTGGCC 512
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 240 AACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGATCGGAGATATTGGCC 299
Query 513 ATATTTTAGTGGATTCGTTGGAGCTATGGATGGTACTCAT 552
|||||||||||||||||||| |||||||||||| ||||||
Sbjct 300 ATATTTTAGTGGATTCGTTGAAGCTATGGATGGAACTCAT 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5