BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G43765.1

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913583 jgi|Araly1|913583|Al_scaffold_0001_3837                    357    3e-98
  Ahg913584 jgi|Araly1|913584|Al_scaffold_0001_3838                    337    4e-92


> Ahg913583 jgi|Araly1|913583|Al_scaffold_0001_3837
Length=333

 Score =  357 bits (193),  Expect = 3e-98
 Identities = 235/255 (92%), Gaps = 4/255 (2%)
 Strand=Plus/Plus

Query  56   CCTGTTTGTGAAACTTGTGGCGACATAGGTTTTGAAGAAGCACTTGTCTTTTGTGACTCT  115
            ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  22   CCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAAGCACTAGTCTTTTGTGACTCT  81

Query  116  TGTAAGATTGAGTCTATACACCGCTATTGCATAGGCATAACACCGACTCCTTTTACGGAA  175
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  82   TGTAAGATTGAGTCTATTCACCGCTATTGCATAGGCATAACACCGACTCCTTTCACGGAA  141

Query  176  TACATAACTTGGATCTGTGAGGATTGTGATGAGAGTGACAGTGATTCTGATTGTAAAGAA  235
            |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| || |||
Sbjct  142  TACATAACTTGGATTTGTGAGGACTGTGATGCGAGTGACAGTGATTCTGATTGCAATGAA  201

Query  236  CTGGATCAGACTGCTAAGCTTACACATATCTTgaagaagagtgac-aa-aaagaagaaga  293
             | ||||||||| ||||||||||| |||||||||||||||  ||| || ||| |||||||
Sbjct  202  GTTGATCAGACTCCTAAGCTTACAAATATCTTGAAGAAGAA-GACGAAGAAA-AAGAAGA  259

Query  294  agaggaagaagaaga  308
            ||| |||||||||||
Sbjct  260  AGAAGAAGAAGAAGA  274


> Ahg913584 jgi|Araly1|913584|Al_scaffold_0001_3838
Length=1449

 Score =  337 bits (182),  Expect = 4e-92
 Identities = 230/252 (91%), Gaps = 7/252 (3%)
 Strand=Plus/Plus

Query  55   ACCTGTTTGTGAAACTTGTGGCGACATAGGTTTTGAAGAAGCACTTGTCTTTTGTGACTC  114
            |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  21   ACCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAAGCACTAGTCTTTTGTGACTC  80

Query  115  TTGTAAGATTGAGTCTATACACCGCTATTGCATAGGCATAACACCGACTCCTTTTACGGA  174
            |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  81   TTGTAAGATTGAGTCTATTCACCGCTATTGTATAGGCATAACACCGACTCCTTTTACGGA  140

Query  175  ATACATAACTTGGATCTGTGAGGATTGTGATGAGAGTGACAGTGATTCTGATTGTAAAGA  234
            ||||||||||||||| |||||||| |||||||||||||||||||||||| |||| || ||
Sbjct  141  ATACATAACTTGGATTTGTGAGGACTGTGATGAGAGTGACAGTGATTCTTATTGCAATGA  200

Query  235  AC-TGGATCAGACTGCTAAGCTTACACATATCTTgaagaagagtgac-aa-aaagaagaa  291
            |  || |||| ||| |||||||||||||||||||||||||||  ||  || ||| |||||
Sbjct  201  AGATG-ATCAAACTCCTAAGCTTACACATATCTTGAAGAAGAA-GAAGAAGAAA-AAGAA  257

Query  292  gaagaggaagaa  303
            |||||||| |||
Sbjct  258  GAAGAGGA-GAA  268



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14575434998


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5