BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43770.2
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913584 jgi|Araly1|913584|Al_scaffold_0001_3838 1088 0.0
Ahg913583 jgi|Araly1|913583|Al_scaffold_0001_3837 294 1e-78
> Ahg913584 jgi|Araly1|913584|Al_scaffold_0001_3838
Length=1449
Score = 1088 bits (589), Expect = 0.0
Identities = 861/983 (88%), Gaps = 56/983 (6%)
Strand=Plus/Plus
Query 359 GGGGTCTAAGAGAGAAGAAAGCTCATGTAGCAGAAAACCTCATGAATTGACTTGTTTAGA 418
||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 366 GGGATCTAAGAGAGAAGAAAGCTCAGGTAGCAGAAAGCCTCATGAATTGACTGGTTTAGT 425
Query 419 TGGAAATGGAGAATCTGTTTTGGAGGCTG-CAGATTCATCTAGTGTGCCAGATCATAGTT 477
|||| || ||| |||||||| |||||| | || | ||||||||||| ||||||||||| |
Sbjct 426 TGGAGATAGAGCATCTGTTTCGGAGGCGGACA-AGTCATCTAGTGTACCAGATCATAGCT 484
Query 478 CTTGTACTAGCAAAAGGAAAGAAGTTGATCAGACTGCTAATCTTGGACATATCTTGGAGA 537
||||||| |||||||||||||||||||||| | | | | |||||||| ||||||||
Sbjct 485 CTTGTACCAGCAAAAGGAAAGAAGTTGATC--A--G---A-C-TGGACATAACTTGGAGA 535
Query 538 GGAGTGagaaaaagaagaagaagaagaagaagaaaaagaGCATCAATCATTCGCCACCGG 597
||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 536 AGAGTGAG--AAA-AAGAAGAAGAAGAAGAAGAAAAAGAGCAGCAATCATTCACCACCGG 592
Query 598 TTTTAGCTGTTGAGGACCATGAGCTTCAGGGTACTACCAATGTTGTTGAACCTGTGGAGG 657
|||||| ||| ||||| ||||||||||||| |||||| || |||||||| ||||||||
Sbjct 593 TTTTAGTTGTCGAGGAACATGAGCTTCAGGATACTACGAA---TGTTGAACATGTGGAGG 649
Query 658 TGTCTTCTTCTTCACCAACTAAAGAAACGATGGAGTCTAAGAGACAAGAAAGCTCAGATA 717
||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 650 TGTCTTCCTCTTCACCAACTAAAGAAATGATGGAGGCTAAGAGACAAGAAAGCTCAGATA 709
Query 718 GTAGAAAACCTCATGAATTGACTTGTTTAGTT---G---GAG-A-----TTCGGAGACCG 765
||||||||||||||||||||||| |||||||| | ||| | ||||||||| |
Sbjct 710 GTAGAAAACCTCATGAATTGACTGGTTTAGTTGGAGATAGAGCATCTGTTTCGGAGACTG 769
Query 766 CTAATTCATCTAGTGTGCCAGAGCATAATTCTTGTGCT-GTCAAAAAGAGAAAATTAAGT 824
| |||||||||||||||||||| |||||||||||| | |||||| ||||||||||||
Sbjct 770 CCAATTCATCTAGTGTGCCAGATTATAATTCTTGTG-TCACCAAAAAAAGAAAATTAAGT 828
Query 825 TCTGGAAACA-A------AC---AGAT--TCAGTTAGCTGATGGGAGTAGTTCTTGCAGA 872
||||||| || | | | || |||||||||||||||| ||||||||||| |
Sbjct 829 TCTGGAAGCATACCGGTTGCTGAAAATAGACAGTTAGCTGATGGGAATAGTTCTTGCAAA 888
Query 873 GTGGCTGAATCAAATATGCCT-------CT-A-ACGTTGACATCTAGGAACTATAGAGCA 923
||||||||||||||||||||| || | | |||| |||||||| | ||||||||
Sbjct 889 GTGGCTGAATCAAATATGCCTCAAACGACTGAGAGGTTGTCATCTAGGCATTATAGAGCG 948
Query 924 CAACCTATCAAAATACCGATATGGAGGGGATTGATGTCTGTTAAAGGAGGAAACAGCTGT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 949 CAACCTATCAAAATACCGATATGGAGGGGATTGATGTCTGTTAAAGGAGGAAACAACTGT 1008
Query 984 ACCATGGATGGGATTGTTGCTCATGTATCAAGCTTAGCCTGCCCTAAAGTCCATGAAACG 1043
| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1009 ATCATGGATGGAATTGTTGCTCATGTATCAAGCTTAGCATGTCCTAAAGTCCATGAAACG 1068
Query 1044 GCTAGTTCATTAAAGGGTCGGC-TCTCTGCTGAAATACTTCCTAGGTTGGAAGTATGGCC 1102
|| |||||||||||||| | || ||||||||||| ||||||| |||||||||||||||||
Sbjct 1069 GCGAGTTCATTAAAGGG-CTGCCTCTCTGCTGAAGTACTTCCCAGGTTGGAAGTATGGCC 1127
Query 1103 AAAGACCTTT-TTGAAGAATGGAGGACCTAAGGATGAAAGCGTTGCCCtttttttCTTCC 1161
||| |||||| || |||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1128 AAAAACCTTTCTT-AAGAATGGAGGACCTAAGGATGAAAGTATTGCTCTGTTTTTCTTCC 1186
Query 1162 CTTCCAGTGAAAGTAATGATGAAAAGGTTTTTGATTCCCTTGTTGATAAAATGAAGAAGA 1221
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1187 CTTCCAGTGAAAGTAATGATGAAAAGGTTTTCAATTCCCTTGTTGATAAAATGAAGAAGA 1246
Query 1222 ATGATTCTGCGATGAGATGTGTGCTTAATGATGCAGAACTTCTACTCTTCACATCTTATA 1281
|||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1247 ATGATTCTGCAATGAGATTTGTGCTTAATGATGCAGAACTTCTACTGTTCACCTCTTATA 1306
Query 1282 TGTTACCAAAGGATTCTTGGACT 1304
|||||||||||||||||||||||
Sbjct 1307 TGTTACCAAAGGATTCTTGGACT 1329
Score = 300 bits (162), Expect = 3e-80
Identities = 197/214 (92%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 69 ATGTCTTTACATGTCAAGGGACCTGTTTGTCAAACTTGTGGCGACATAGGTTTTGAAGAA 128
|||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTCTTTACATATCAAGGCACCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAA 60
Query 129 GCACTTGTCTTTTGTGACTCTTGTATGTTTGAGTCTATTCACCGCTATTGCT-TAGGGAT 187
||||| ||||||||||||||||||| | |||||||||||||||||||||| | |||| ||
Sbjct 61 GCACTAGTCTTTTGTGACTCTTGTAAGATTGAGTCTATTCACCGCTATTG-TATAGGCAT 119
Query 188 AACACCGATTCCTTTTACGGAATACATAACTTGGATTTGTGAGGATTGTGATAACAGTGA 247
|||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 120 AACACCGACTCCTTTTACGGAATACATAACTTGGATTTGTGAGGACTGTGATGAGAGTGA 179
Query 248 GAGTGATTCTGATTGCAATGAAGTTGATCAGACT 281
||||||||| |||||||||||| |||||| |||
Sbjct 180 CAGTGATTCTTATTGCAATGAAGATGATCAAACT 213
> Ahg913583 jgi|Araly1|913583|Al_scaffold_0001_3837
Length=333
Score = 294 bits (159), Expect = 1e-78
Identities = 197/215 (92%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 69 ATGTCTTTACATGTCAAGG-GACCTGTTTGTCAAACTTGTGGCGACATAGGTTTTGAAGA 127
|||||| || || |||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCTGTAAATATCAAGGCG-CCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGA 59
Query 128 AGCACTTGTCTTTTGTGACTCTTGTATGTTTGAGTCTATTCACCGCTATTGCTTAGGGAT 187
|||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||
Sbjct 60 AGCACTAGTCTTTTGTGACTCTTGTAAGATTGAGTCTATTCACCGCTATTGCATAGGCAT 119
Query 188 AACACCGATTCCTTTTACGGAATACATAACTTGGATTTGTGAGGATTGTGATAAC-AGTG 246
|||||||| |||||| ||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 120 AACACCGACTCCTTTCACGGAATACATAACTTGGATTTGTGAGGACTGTGAT-GCGAGTG 178
Query 247 AGAGTGATTCTGATTGCAATGAAGTTGATCAGACT 281
| |||||||||||||||||||||||||||||||||
Sbjct 179 ACAGTGATTCTGATTGCAATGAAGTTGATCAGACT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69476606880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5