BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G43780.1 Length=1440 Score E Sequences producing significant alignments: (Bits) Value Ahg913585 jgi|Araly1|913585|Al_scaffold_0001_3839 2167 0.0 Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1 776 0.0 Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181 292 4e-78 > Ahg913585 jgi|Araly1|913585|Al_scaffold_0001_3839 Length=1440 Score = 2167 bits (1173), Expect = 0.0 Identities = 1354/1443 (94%), Gaps = 6/1443 (0%) Strand=Plus/Plus Query 1 ATGGTGGGAGGTAAGTGGCGGTTCCTAGAAGTAGCAGTCGTAGTAATGGTGTTGCAGTGG 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGGGAGGTAAGTGGCGGTTCCTAGAAGTAGCAGTCGTAGTAATGGTGTTGCAGTGG 60 Query 61 TCGTGCGATTATAATGGTAATTTAGCTGAAGGATTTCCAGTACAAGATCTTGTGACAAAG 120 | ||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 61 TGGTGGGGTTATAATGGTAATTTAGCTGAGGGATTTCCAGTAGAAGATCTTGTGACAAAA 120 Query 121 CTGCCTGGACAACCTGAAGTGGCATTCAGACAATTTGCGGGCTATGTCGATATCGATGTC 180 |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 121 CTGCCTGGACAACCGGAAGTGGCATTCAGACAATTCGCGGGTTATGTCGATATCGATGTC 180 Query 181 AAAGCTGGTCGGAGTCTCTTTTATTACTTCGTCGAAGCTGAGAAGCAACCCCACTCTAAA 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 AAAGCTGGTCGGAGTCTCTTTTATTACTTCGTCGAAGCCGAGAAGCAACCCCACTCTAAA 240 Query 241 CCGTTAACTCTTTGGCTCAATGGAGGACCAGGCTGTTCTTCCATAGGAGGAGGAGCTTTC 300 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCTTTAACCCTTTGGCTCAATGGAGGACCAGGCTGTTCTTCCATAGGAGGAGGAGCTTTT 300 Query 301 ACAGAGTTGGGCCCATTTTACCCCACCGGAGATGCTCGTGGCCTCCGCAGAAATCCCAAA 360 ||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 301 ACAGAGTTGGGTCCATTTTACCCCATCGGAAATGGTCGTGGCCTCCGCAGAAATCCCAAA 360 Query 361 TCTTGGAACAAAGCCTCAAATCTATTGTTTGTGGATTCACCTGCTGGAGTAGGATGGTCT 420 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TCTTGGAACAAAGCCTCAAATCTATTGTTTGTGGATTCACCGGCTGGAGTAGGATGGTCT 420 Query 421 TATTCTAACACAACTTCTGATTACACCACTGGCGATGAATCCACCGCCAAGGATATGTTG 480 ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 421 TATTCGAATACAACTTCTGATTACACCACTGGCGATGAATCCACTGCCAAGGATATGCTG 480 Query 481 GTGTTCATGTTAAGATGGTTAGAAAAATTTCCACAATTCAAGACTCGAAACCTATTTCTC 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 481 GTGTTCATGTTAAGATGGTTAGAAAAATTTCCACAATTCAAGACTCGAAACCTCTTTCTC 540 Query 541 GCGGGCGAAAGCTACGCAGGACACTATGTACCTCAACTAGCCGATGTGATACTCGAATAC 600 || ||||||||||| ||||||||||| |||||||| |||| ||||||||||| |||||| Sbjct 541 GCTGGCGAAAGCTATGCAGGACACTACATACCTCAATTAGCTGATGTGATACTTGAATAC 600 Query 601 AACGCA-CAACGGTCAAATAGATTCAAGTTCAATCTCAAAGGGATTGCAATTGGAAATCC 659 ||| || ||||| |||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 601 AAC-CAACAACGCACAAACAGATTCAAGTTCAATCTCAAAGGGATTGCAATCGGGAATCC 659 Query 660 GCTTTTGAAGCTTGACCGCGATGTTCCAGCGATATATGAGTTCTTCTGGTCACACGGGAT 719 ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 660 ACTTTTGAAGCTTGACCGCGATATTCCAGCGATGTATGAGTTCTTCTGGTCACACGGGAT 719 Query 720 GATCTCTGATGAACTTGGCCTCACTATCATGAACCAATGCGACTTTGAAGATTACACATT 779 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 720 GATATCTGATGAACTTGGCCTCACTATTATGAACCAATGCGACTTTGAAGATTACTCATT 779 Query 780 CACAGATTCACACAACATAAGCAAA-CTTTGCGAAGCTGCAGTGAATCAAGCTGGAACCA 838 ||||| ||| ||||||||||||||| ||| ||||||| || |||| |||||| ||||||| Sbjct 780 CACAGGTTCGCACAACATAAGCAAATCTT-GCGAAGCCGCGGTGAGTCAAGCCGGAACCA 838 Query 839 TCATCACTCAATATGTTAATTACTACGACATTCTCCTCGATGTATGCTACCCGTCTCTCT 898 |||||||||||||||| |||||||||||||| || |||||| | |||||||| || |||| Sbjct 839 TCATCACTCAATATGTCAATTACTACGACATCCTTCTCGATATCTGCTACCCCTCCCTCT 898 Query 899 TCGAGCAAGAGCTTAGGCTCAAGAAAATGGGTACAAGGATGAGTTTTGGGGTGGACGTGT 958 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 899 TCGAGCAAGAGCTCAGGCTCAAGAAAATGGGTACAAAGATGAGTTTTGGGGTGGACGTGT 958 Query 959 GCATGAGCTT-TGAAGAGCAATTGTATTTAAATCTTCCTGAGGTTCAAAAGGCTCTCCAT 1017 ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 959 GCATGAG-TTATGAAGAGCAATTGTATTTAACTCTTCCTGAGGTTCAAAAGGCTCTCCAT 1017 Query 1018 GCTAACCGAACTAAACTACCGTATGAATGGTCTATGTGCAGCAGCCTCTTGAACTACAAA 1077 ||||| |||||| |||| || ||| ||||||||||||| |||||||||||||| ||||| Sbjct 1018 GCTAATCGAACTCAACTGCCATATCAATGGTCTATGTGTAGCAGCCTCTTGAAATACAAT 1077 Query 1078 TACACTGACGGGAACGCCAACATGCTTCCAATTCTTAAAAGAATCGTGAAGAGCAAAGTC 1137 ||||||||||||||| |||| ||||||||||||||||| || ||||| |||||||||||| Sbjct 1078 TACACTGACGGGAACACCAATATGCTTCCAATTCTTAAGAGGATCGTTAAGAGCAAAGTC 1137 Query 1138 CCTGTTTGGGTCTTCAGTGGAGATGAAGATTCTGTAATTCCACTTCTTGGTTCAAGAACT 1197 | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1138 CATGTTTGGGTCTTCAGTGGGGATGAAGATTCTGTAATTCCACTTCTTGGATCAAGGACT 1197 Query 1198 TTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCTTATGGAGCTTGG 1257 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1198 TTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCCTATGGAGCTTGG 1257 Query 1258 TTCGACAAAGGACAGGTTGGCGGATGGGTAGTAGAGTATGGGAATCTACTGACATTCGCA 1317 || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1258 TTTGACAAAGGACAGGTTGGCGGATGGGTAATAGAGTATGGGAATCTAGTGACATTCGCA 1317 Query 1318 ACGGTGAGAGGAGCGGCTCATATGGTGCCGTACTCGCAGCCTTCACGAGCTTTACATTTG 1377 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1318 ACGGTGAGAGGAGCGGCTCATATGGTGCCTTACTCGCAGCCTTCACGAGCTTTGCATTTG 1377 Query 1378 TTCACCAGCTTTGTGCTTGGCCGGAAATTGCCACACAAGTCGCCTCCTGCTCTTCATGAT 1437 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1378 TTCACCAGCTTTGTGCTTGGCCGGAGATTGCCACACAAATCGCCTCCTGCTCTTCATGAT 1437 Query 1438 TGA 1440 ||| Sbjct 1438 TGA 1440 > Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1 Length=1686 Score = 776 bits (420), Expect = 0.0 Identities = 1014/1295 (78%), Gaps = 63/1295 (5%) Strand=Plus/Plus Query 145 TTCAGACAAT-TTGCGGGCTATGTCGATATCGATGTCAAAGCTGGTCGGAGTCTCTTTTA 203 |||||||||| | | || ||||||||| ||||||| ||||||||||||||||| || || Sbjct 143 TTCAGACAATACT-CAGGTTATGTCGATGTCGATGTGAAAGCTGGTCGGAGTCTGTTCTA 201 Query 204 TTACTTCGTCGAAGCTGAGAAGCAACCCCACTCTAAACCGTTAACTCTTTGGCTCAATGG 263 ||||| ||| || |||| ||| ||||| || | ||||| || || |||||||||||||| Sbjct 202 TTACTACGTGGAGGCTGTGAAACAACCAGACACAAAACCATTGACCCTTTGGCTCAATGG 261 Query 264 AGGACCAGGCTGTTCTTCCATAGGAGGAGGAGCTTTCACAGAGTTGGGCCCATTTTACCC 323 ||| ||||| |||||||| || || |||||||||||||| |||||||| ||||||||||| Sbjct 262 AGGTCCAGGTTGTTCTTCAATTGGTGGAGGAGCTTTCACTGAGTTGGGTCCATTTTACCC 321 Query 324 CACCGGAGAT-GCTCGTGGCCTCCGCAG--AAATCCCAAATCTTGGAACAAAGCCTC-AA 379 ||| || ||| || |||||||| ||| | || | || ||||||||||||||||| || Sbjct 322 CACTGGCGATGGC-CGTGGCCTTCGC-GTTAACT-CCTTGTCTTGGAACAAAGCCTCGAA 378 Query 380 ATCT-ATTGTTTGTGGATTCACCTGCTGGAGTAGGATGGTCTTATTCTAACAC-AA-CTT 436 | | || |||||||| ||||| |||||||||||||||||||| || ||| | || | Sbjct 379 CT-TGCTT-TTTGTGGAGTCACCGGCTGGAGTAGGATGGTCTTACTCCAAC-CGAAGC-A 434 Query 437 CTGATTACACCACTGGCGATGAATCCACCGCCAAG-GATATGTTGGTGTTCATGTTAAGA 495 ||||||||| ||| || || || | || | | || |||||| | |||||| |||| ||| Sbjct 435 CTGATTACAACACCGGGGACAAAACTACTG-CTAGAGATATGCTCGTGTTCTTGTTGAGA 493 Query 496 TGGTTAGAAAAATTTCCACAA-TTCAAGACTCGAAACCTATTTCTCGCGGGCGAAAGCTA 554 ||||| || || || ||| || || ||| |||| |||| ||||| | ||||||||||| Sbjct 494 TGGTTTGACAAGTTCCCA-AAGTTGAAGTCTCGGGACCTCTTTCTTACTGGCGAAAGCTA 552 Query 555 CGCAGGACACTATGTACCTCAACTAGCCGATGTGATACTCGA-ATACAACGCACAACGGT 613 || ||||| || |||| ||| | || |||| ||| ||| | ||||| |||| || | Sbjct 553 TGCTGGACATTACATACCGCAATTGGCTGATGCGATTCTC-AGCTACAATGCAC-AC--T 608 Query 614 CAAATAGATTCAAGTTCAATC-TCAAAGG-GATTGCAATTGGAAATCCGCTTTTGAAGCT 671 | | | ||||||| ||||| | | ||||| | ||||||| || ||||| || |||| || Sbjct 609 CCAGTGGATTCAAATTCAA-CATTAAAGGCG-TTGCAATCGGGAATCCACTACTGAAACT 666 Query 672 TGACCGCGA-TGTTCCAGCGATATATGAGTTCTTCTGGTCACACGGGATGATCTCTGATG 730 |||| | || | |||||| | || |||||||||||||| || |||||||| ||||||| Sbjct 667 TGACAGAGACAG-TCCAGCTACGTACGAGTTCTTCTGGTCGCATGGGATGATTTCTGATG 725 Query 731 AACTTGGCCTCACTATCATGAACCAATGCGACTTTGAAGATTACACA-TT-CACAGATTC 788 |||| ||||| |||| || |||||| |||||||| ||||||||| || | ||| | Sbjct 726 AACTCAAACTCACAATCACGAGCCAATGTGACTTTGATGATTACACATTTGC-CAG-CCC 783 Query 789 ACACAACATAAGCA-AACTTTGCGAA-GCTGC-AGTGAATCAAGCTGGAACCATCATCAC 845 || ||| |||||| | ||| || | ||| | | | | || | |||| |||||||| Sbjct 784 CCATAACGTAAGCACGGC-CTGC-AATGATGCTA-TTAGTGAAACCGGAAACATCATCAG 840 Query 846 TCAATATGTTAATTACTACGACATTCTCCTCGATGTATGCTACCCGTCTCTCTTCGAGCA 905 | | ||||| || |||| || |||||||||| ||||| || |||||| || || |||| Sbjct 841 TGAGTATGTCAACAACTATGATGTTCTCCTCGACGTATGTTATCCGTCTATCGTCCAGCA 900 Query 906 AGAGCTTAGGCTCAAGAAAATGGGTAC-AAGGA-TGAGTTTTGGG-GTGGACGTGTGCAT 962 |||||| |||||||||||||||| ||| || | |||| ||||| ||||| ||||| || Sbjct 901 AGAGCTGAGGCTCAAGAAAATGGCTACTAA--ACTGAG-CTTGGGAGTGGATGTGTGTAT 957 Query 963 GAGCTTTG-AAGAGCAATTGTA-TTTAAATCTTCCTGAGGTTCAAAAGGCTCTCCATGCT 1020 || || || |||| | || || ||| || ||||| ||||| |||||||| || ||||| Sbjct 958 GACCTATGAAAGA-CGGTTCTACTTT-AACCTTCCAGAGGTACAAAAGGCGCTTCATGCG 1015 Query 1021 AACCGAACTAAACTACCGTATGAATGGTCTATGTGCAGCAGCCTCTTGAACTACAAAT-A 1079 ||||| ||| | || || ||||||||||| ||||||||| | | ||||||||| | | Sbjct 1016 AACCGTACTCATCTGCCTTATGAATGGTCAATGTGCAGCGGTCAGTTGAACTAC-TCTGA 1074 Query 1080 CACTGACGGGAACGCCAACATGCTTCCAATTCTTAAAAGAATCGTGA-AGAGC-AAAGTC 1137 ||| || | ||| | |||||||||| ||||| || ||||| | | ||| | ||| | Sbjct 1075 CACCGATGCGAATATCGACATGCTTCCGATTCTGAAGAGAATTAT-ACAGAACAAAACT- 1132 Query 1138 CCTGTTTGGGTCTTCAGTGGAGATGAAGATTCTGTAATTCCACTTC-TTGGTTCAAGAAC 1196 ||||||||| |||||||||||||| ||||||||||| ||||| ||| | ||||||||||| Sbjct 1133 CCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCA-TTCGTCGGTTCAAGAAC 1191 Query 1197 TTTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCTTATGGAGCTTG 1256 | | |||| ||||||||| | |||||||||||| | ||||||||||| || ||||| || Sbjct 1192 TCTCGTAAGAGAACTTGCTCACGATCTCAACTTCGAGACCACAGTTCCCTACGGAGCCTG 1251 Query 1257 GTTCGACAAAGGACAGGTTGGCGGATGGG-TAGTAGAGTATGGGAATCTACTGACATTCG 1315 |||| ||||| | |||||||| || |||| | | || || || || |||||||| || | Sbjct 1252 GTTCCACAAAAGTCAGGTTGGAGGCTGGGCCA-TTGAATACGGAAAACTACTGACGTTTG 1310 Query 1316 CAACGGTGAGAGGAGCGGCTCATATGGTGCCGTACT-CGCAGCCTTCACGAGCTTTACAT 1374 |||||||||||||||||||||||||||| || || | | ||||| ||||||||| ||||| Sbjct 1311 CAACGGTGAGAGGAGCGGCTCATATGGTACCATA-TGCACAGCCCTCACGAGCTCTACAT 1369 Query 1375 TTGTTCACCAGCTTTGTGCTTGGCCGGAAATTGCC 1409 ||||||| ||||||||| |||||||| |||||| Sbjct 1370 TTGTTCAGTAGCTTTGTGAGTGGCCGGAGATTGCC 1404 > Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181 Length=1356 Score = 292 bits (158), Expect = 4e-78 Identities = 314/387 (81%), Gaps = 20/387 (5%) Strand=Plus/Plus Query 1033 CTACCGTATGAATGGTCTATGTGCAGCAGCCTCTTGAACTACAAAT-ACACT-GACGGGA 1090 ||||| ||||| ||| |||||||||||| || || |||||| | | || | || ||| Sbjct 943 CTACCTTATGAGTGGACTATGTGCAGCAACCGGTTAAACTAC-AGTGGCA-TCGA-TGGA 999 Query 1091 -ACGCCAACATGCTTCCAATTCTTAAAAGAATCGTGA-AG-AGCAAAGTCCCTGTTTGGG 1147 || | |||||||||| |||||||| ||||| | | || | |||| | ||||||||| Sbjct 1000 TACATCGACATGCTTCCGATTCTTAAGAGAATTAT-ACAGAACCAAACT-CCTGTTTGGA 1057 Query 1148 TCTTCAGTGGAGATGAAGATTCTGTAATTCCACTTCTTGGTTCAAGAACTTTG-GTAAAA 1206 ||||||||||||| ||||||||||||||||||||| |||||||||| | ||| | Sbjct 1058 TCTTCAGTGGAGACCAAGATTCTGTAATTCCACTTCAAAGTTCAAGAAC-ACGCGTACGA 1116 Query 1207 GAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCTTATGGAGCTTGGTTCGACAAA 1266 |||||||| | |||||||||||||| ||||| ||||| |||||||| |||||| ||||| Sbjct 1117 GAACTTGCTCAGGATCTCAACTTCAAGACCACTGTTCCCTATGGAGCCTGGTTCCACAAA 1176 Query 1267 GGACAGGTTGGCGGATGGGT-AGTAGAGTATGGGAATCTACTGACATTCGCAACGGTGAG 1325 | ||||||||| || ||||| | ||||||||||||||||||||| || ||||||||||| Sbjct 1177 GAACAGGTTGGTGGCTGGGTCA-CAGAGTATGGGAATCTACTGACCTTTGCAACGGTGAG 1235 Query 1326 AGGAGCGGCTCATATGGTG-CCGTACT-CGCAGCCTTCACGAGCTTTACATTTGTTCACC 1383 ||||||||||||||||||| || || | || |||| ||||||||| | || |||||| Sbjct 1236 AGGAGCGGCTCATATGGTGGCC-TA-TGCGGAGCCCTCACGAGCTCTGCACATGTTCAGT 1293 Query 1384 AGCTTTGTG-CTTGGCCGGAAATTGCC 1409 | ||||||| || ||||||| |||||| Sbjct 1294 ACCTTTGTGACT-GGCCGGAGATTGCC 1319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53859606430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5