BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43780.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913585 jgi|Araly1|913585|Al_scaffold_0001_3839 2167 0.0
Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1 776 0.0
Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181 292 4e-78
> Ahg913585 jgi|Araly1|913585|Al_scaffold_0001_3839
Length=1440
Score = 2167 bits (1173), Expect = 0.0
Identities = 1354/1443 (94%), Gaps = 6/1443 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGGAGGTAAGTGGCGGTTCCTAGAAGTAGCAGTCGTAGTAATGGTGTTGCAGTGG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGGAGGTAAGTGGCGGTTCCTAGAAGTAGCAGTCGTAGTAATGGTGTTGCAGTGG 60
Query 61 TCGTGCGATTATAATGGTAATTTAGCTGAAGGATTTCCAGTACAAGATCTTGTGACAAAG 120
| ||| | ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 61 TGGTGGGGTTATAATGGTAATTTAGCTGAGGGATTTCCAGTAGAAGATCTTGTGACAAAA 120
Query 121 CTGCCTGGACAACCTGAAGTGGCATTCAGACAATTTGCGGGCTATGTCGATATCGATGTC 180
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 CTGCCTGGACAACCGGAAGTGGCATTCAGACAATTCGCGGGTTATGTCGATATCGATGTC 180
Query 181 AAAGCTGGTCGGAGTCTCTTTTATTACTTCGTCGAAGCTGAGAAGCAACCCCACTCTAAA 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AAAGCTGGTCGGAGTCTCTTTTATTACTTCGTCGAAGCCGAGAAGCAACCCCACTCTAAA 240
Query 241 CCGTTAACTCTTTGGCTCAATGGAGGACCAGGCTGTTCTTCCATAGGAGGAGGAGCTTTC 300
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTTTAACCCTTTGGCTCAATGGAGGACCAGGCTGTTCTTCCATAGGAGGAGGAGCTTTT 300
Query 301 ACAGAGTTGGGCCCATTTTACCCCACCGGAGATGCTCGTGGCCTCCGCAGAAATCCCAAA 360
||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 301 ACAGAGTTGGGTCCATTTTACCCCATCGGAAATGGTCGTGGCCTCCGCAGAAATCCCAAA 360
Query 361 TCTTGGAACAAAGCCTCAAATCTATTGTTTGTGGATTCACCTGCTGGAGTAGGATGGTCT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TCTTGGAACAAAGCCTCAAATCTATTGTTTGTGGATTCACCGGCTGGAGTAGGATGGTCT 420
Query 421 TATTCTAACACAACTTCTGATTACACCACTGGCGATGAATCCACCGCCAAGGATATGTTG 480
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 421 TATTCGAATACAACTTCTGATTACACCACTGGCGATGAATCCACTGCCAAGGATATGCTG 480
Query 481 GTGTTCATGTTAAGATGGTTAGAAAAATTTCCACAATTCAAGACTCGAAACCTATTTCTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GTGTTCATGTTAAGATGGTTAGAAAAATTTCCACAATTCAAGACTCGAAACCTCTTTCTC 540
Query 541 GCGGGCGAAAGCTACGCAGGACACTATGTACCTCAACTAGCCGATGTGATACTCGAATAC 600
|| ||||||||||| ||||||||||| |||||||| |||| ||||||||||| ||||||
Sbjct 541 GCTGGCGAAAGCTATGCAGGACACTACATACCTCAATTAGCTGATGTGATACTTGAATAC 600
Query 601 AACGCA-CAACGGTCAAATAGATTCAAGTTCAATCTCAAAGGGATTGCAATTGGAAATCC 659
||| || ||||| |||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 601 AAC-CAACAACGCACAAACAGATTCAAGTTCAATCTCAAAGGGATTGCAATCGGGAATCC 659
Query 660 GCTTTTGAAGCTTGACCGCGATGTTCCAGCGATATATGAGTTCTTCTGGTCACACGGGAT 719
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 660 ACTTTTGAAGCTTGACCGCGATATTCCAGCGATGTATGAGTTCTTCTGGTCACACGGGAT 719
Query 720 GATCTCTGATGAACTTGGCCTCACTATCATGAACCAATGCGACTTTGAAGATTACACATT 779
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 720 GATATCTGATGAACTTGGCCTCACTATTATGAACCAATGCGACTTTGAAGATTACTCATT 779
Query 780 CACAGATTCACACAACATAAGCAAA-CTTTGCGAAGCTGCAGTGAATCAAGCTGGAACCA 838
||||| ||| ||||||||||||||| ||| ||||||| || |||| |||||| |||||||
Sbjct 780 CACAGGTTCGCACAACATAAGCAAATCTT-GCGAAGCCGCGGTGAGTCAAGCCGGAACCA 838
Query 839 TCATCACTCAATATGTTAATTACTACGACATTCTCCTCGATGTATGCTACCCGTCTCTCT 898
|||||||||||||||| |||||||||||||| || |||||| | |||||||| || ||||
Sbjct 839 TCATCACTCAATATGTCAATTACTACGACATCCTTCTCGATATCTGCTACCCCTCCCTCT 898
Query 899 TCGAGCAAGAGCTTAGGCTCAAGAAAATGGGTACAAGGATGAGTTTTGGGGTGGACGTGT 958
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 TCGAGCAAGAGCTCAGGCTCAAGAAAATGGGTACAAAGATGAGTTTTGGGGTGGACGTGT 958
Query 959 GCATGAGCTT-TGAAGAGCAATTGTATTTAAATCTTCCTGAGGTTCAAAAGGCTCTCCAT 1017
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 GCATGAG-TTATGAAGAGCAATTGTATTTAACTCTTCCTGAGGTTCAAAAGGCTCTCCAT 1017
Query 1018 GCTAACCGAACTAAACTACCGTATGAATGGTCTATGTGCAGCAGCCTCTTGAACTACAAA 1077
||||| |||||| |||| || ||| ||||||||||||| |||||||||||||| |||||
Sbjct 1018 GCTAATCGAACTCAACTGCCATATCAATGGTCTATGTGTAGCAGCCTCTTGAAATACAAT 1077
Query 1078 TACACTGACGGGAACGCCAACATGCTTCCAATTCTTAAAAGAATCGTGAAGAGCAAAGTC 1137
||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 1078 TACACTGACGGGAACACCAATATGCTTCCAATTCTTAAGAGGATCGTTAAGAGCAAAGTC 1137
Query 1138 CCTGTTTGGGTCTTCAGTGGAGATGAAGATTCTGTAATTCCACTTCTTGGTTCAAGAACT 1197
| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1138 CATGTTTGGGTCTTCAGTGGGGATGAAGATTCTGTAATTCCACTTCTTGGATCAAGGACT 1197
Query 1198 TTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCTTATGGAGCTTGG 1257
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 TTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCCTATGGAGCTTGG 1257
Query 1258 TTCGACAAAGGACAGGTTGGCGGATGGGTAGTAGAGTATGGGAATCTACTGACATTCGCA 1317
|| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1258 TTTGACAAAGGACAGGTTGGCGGATGGGTAATAGAGTATGGGAATCTAGTGACATTCGCA 1317
Query 1318 ACGGTGAGAGGAGCGGCTCATATGGTGCCGTACTCGCAGCCTTCACGAGCTTTACATTTG 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1318 ACGGTGAGAGGAGCGGCTCATATGGTGCCTTACTCGCAGCCTTCACGAGCTTTGCATTTG 1377
Query 1378 TTCACCAGCTTTGTGCTTGGCCGGAAATTGCCACACAAGTCGCCTCCTGCTCTTCATGAT 1437
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1378 TTCACCAGCTTTGTGCTTGGCCGGAGATTGCCACACAAATCGCCTCCTGCTCTTCATGAT 1437
Query 1438 TGA 1440
|||
Sbjct 1438 TGA 1440
> Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1
Length=1686
Score = 776 bits (420), Expect = 0.0
Identities = 1014/1295 (78%), Gaps = 63/1295 (5%)
Strand=Plus/Plus
Query 145 TTCAGACAAT-TTGCGGGCTATGTCGATATCGATGTCAAAGCTGGTCGGAGTCTCTTTTA 203
|||||||||| | | || ||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 143 TTCAGACAATACT-CAGGTTATGTCGATGTCGATGTGAAAGCTGGTCGGAGTCTGTTCTA 201
Query 204 TTACTTCGTCGAAGCTGAGAAGCAACCCCACTCTAAACCGTTAACTCTTTGGCTCAATGG 263
||||| ||| || |||| ||| ||||| || | ||||| || || ||||||||||||||
Sbjct 202 TTACTACGTGGAGGCTGTGAAACAACCAGACACAAAACCATTGACCCTTTGGCTCAATGG 261
Query 264 AGGACCAGGCTGTTCTTCCATAGGAGGAGGAGCTTTCACAGAGTTGGGCCCATTTTACCC 323
||| ||||| |||||||| || || |||||||||||||| |||||||| |||||||||||
Sbjct 262 AGGTCCAGGTTGTTCTTCAATTGGTGGAGGAGCTTTCACTGAGTTGGGTCCATTTTACCC 321
Query 324 CACCGGAGAT-GCTCGTGGCCTCCGCAG--AAATCCCAAATCTTGGAACAAAGCCTC-AA 379
||| || ||| || |||||||| ||| | || | || ||||||||||||||||| ||
Sbjct 322 CACTGGCGATGGC-CGTGGCCTTCGC-GTTAACT-CCTTGTCTTGGAACAAAGCCTCGAA 378
Query 380 ATCT-ATTGTTTGTGGATTCACCTGCTGGAGTAGGATGGTCTTATTCTAACAC-AA-CTT 436
| | || |||||||| ||||| |||||||||||||||||||| || ||| | || |
Sbjct 379 CT-TGCTT-TTTGTGGAGTCACCGGCTGGAGTAGGATGGTCTTACTCCAAC-CGAAGC-A 434
Query 437 CTGATTACACCACTGGCGATGAATCCACCGCCAAG-GATATGTTGGTGTTCATGTTAAGA 495
||||||||| ||| || || || | || | | || |||||| | |||||| |||| |||
Sbjct 435 CTGATTACAACACCGGGGACAAAACTACTG-CTAGAGATATGCTCGTGTTCTTGTTGAGA 493
Query 496 TGGTTAGAAAAATTTCCACAA-TTCAAGACTCGAAACCTATTTCTCGCGGGCGAAAGCTA 554
||||| || || || ||| || || ||| |||| |||| ||||| | |||||||||||
Sbjct 494 TGGTTTGACAAGTTCCCA-AAGTTGAAGTCTCGGGACCTCTTTCTTACTGGCGAAAGCTA 552
Query 555 CGCAGGACACTATGTACCTCAACTAGCCGATGTGATACTCGA-ATACAACGCACAACGGT 613
|| ||||| || |||| ||| | || |||| ||| ||| | ||||| |||| || |
Sbjct 553 TGCTGGACATTACATACCGCAATTGGCTGATGCGATTCTC-AGCTACAATGCAC-AC--T 608
Query 614 CAAATAGATTCAAGTTCAATC-TCAAAGG-GATTGCAATTGGAAATCCGCTTTTGAAGCT 671
| | | ||||||| ||||| | | ||||| | ||||||| || ||||| || |||| ||
Sbjct 609 CCAGTGGATTCAAATTCAA-CATTAAAGGCG-TTGCAATCGGGAATCCACTACTGAAACT 666
Query 672 TGACCGCGA-TGTTCCAGCGATATATGAGTTCTTCTGGTCACACGGGATGATCTCTGATG 730
|||| | || | |||||| | || |||||||||||||| || |||||||| |||||||
Sbjct 667 TGACAGAGACAG-TCCAGCTACGTACGAGTTCTTCTGGTCGCATGGGATGATTTCTGATG 725
Query 731 AACTTGGCCTCACTATCATGAACCAATGCGACTTTGAAGATTACACA-TT-CACAGATTC 788
|||| ||||| |||| || |||||| |||||||| ||||||||| || | ||| |
Sbjct 726 AACTCAAACTCACAATCACGAGCCAATGTGACTTTGATGATTACACATTTGC-CAG-CCC 783
Query 789 ACACAACATAAGCA-AACTTTGCGAA-GCTGC-AGTGAATCAAGCTGGAACCATCATCAC 845
|| ||| |||||| | ||| || | ||| | | | | || | |||| ||||||||
Sbjct 784 CCATAACGTAAGCACGGC-CTGC-AATGATGCTA-TTAGTGAAACCGGAAACATCATCAG 840
Query 846 TCAATATGTTAATTACTACGACATTCTCCTCGATGTATGCTACCCGTCTCTCTTCGAGCA 905
| | ||||| || |||| || |||||||||| ||||| || |||||| || || ||||
Sbjct 841 TGAGTATGTCAACAACTATGATGTTCTCCTCGACGTATGTTATCCGTCTATCGTCCAGCA 900
Query 906 AGAGCTTAGGCTCAAGAAAATGGGTAC-AAGGA-TGAGTTTTGGG-GTGGACGTGTGCAT 962
|||||| |||||||||||||||| ||| || | |||| ||||| ||||| ||||| ||
Sbjct 901 AGAGCTGAGGCTCAAGAAAATGGCTACTAA--ACTGAG-CTTGGGAGTGGATGTGTGTAT 957
Query 963 GAGCTTTG-AAGAGCAATTGTA-TTTAAATCTTCCTGAGGTTCAAAAGGCTCTCCATGCT 1020
|| || || |||| | || || ||| || ||||| ||||| |||||||| || |||||
Sbjct 958 GACCTATGAAAGA-CGGTTCTACTTT-AACCTTCCAGAGGTACAAAAGGCGCTTCATGCG 1015
Query 1021 AACCGAACTAAACTACCGTATGAATGGTCTATGTGCAGCAGCCTCTTGAACTACAAAT-A 1079
||||| ||| | || || ||||||||||| ||||||||| | | ||||||||| | |
Sbjct 1016 AACCGTACTCATCTGCCTTATGAATGGTCAATGTGCAGCGGTCAGTTGAACTAC-TCTGA 1074
Query 1080 CACTGACGGGAACGCCAACATGCTTCCAATTCTTAAAAGAATCGTGA-AGAGC-AAAGTC 1137
||| || | ||| | |||||||||| ||||| || ||||| | | ||| | ||| |
Sbjct 1075 CACCGATGCGAATATCGACATGCTTCCGATTCTGAAGAGAATTAT-ACAGAACAAAACT- 1132
Query 1138 CCTGTTTGGGTCTTCAGTGGAGATGAAGATTCTGTAATTCCACTTC-TTGGTTCAAGAAC 1196
||||||||| |||||||||||||| ||||||||||| ||||| ||| | |||||||||||
Sbjct 1133 CCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCA-TTCGTCGGTTCAAGAAC 1191
Query 1197 TTTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCTTATGGAGCTTG 1256
| | |||| ||||||||| | |||||||||||| | ||||||||||| || ||||| ||
Sbjct 1192 TCTCGTAAGAGAACTTGCTCACGATCTCAACTTCGAGACCACAGTTCCCTACGGAGCCTG 1251
Query 1257 GTTCGACAAAGGACAGGTTGGCGGATGGG-TAGTAGAGTATGGGAATCTACTGACATTCG 1315
|||| ||||| | |||||||| || |||| | | || || || || |||||||| || |
Sbjct 1252 GTTCCACAAAAGTCAGGTTGGAGGCTGGGCCA-TTGAATACGGAAAACTACTGACGTTTG 1310
Query 1316 CAACGGTGAGAGGAGCGGCTCATATGGTGCCGTACT-CGCAGCCTTCACGAGCTTTACAT 1374
|||||||||||||||||||||||||||| || || | | ||||| ||||||||| |||||
Sbjct 1311 CAACGGTGAGAGGAGCGGCTCATATGGTACCATA-TGCACAGCCCTCACGAGCTCTACAT 1369
Query 1375 TTGTTCACCAGCTTTGTGCTTGGCCGGAAATTGCC 1409
||||||| ||||||||| |||||||| ||||||
Sbjct 1370 TTGTTCAGTAGCTTTGTGAGTGGCCGGAGATTGCC 1404
> Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181
Length=1356
Score = 292 bits (158), Expect = 4e-78
Identities = 314/387 (81%), Gaps = 20/387 (5%)
Strand=Plus/Plus
Query 1033 CTACCGTATGAATGGTCTATGTGCAGCAGCCTCTTGAACTACAAAT-ACACT-GACGGGA 1090
||||| ||||| ||| |||||||||||| || || |||||| | | || | || |||
Sbjct 943 CTACCTTATGAGTGGACTATGTGCAGCAACCGGTTAAACTAC-AGTGGCA-TCGA-TGGA 999
Query 1091 -ACGCCAACATGCTTCCAATTCTTAAAAGAATCGTGA-AG-AGCAAAGTCCCTGTTTGGG 1147
|| | |||||||||| |||||||| ||||| | | || | |||| | |||||||||
Sbjct 1000 TACATCGACATGCTTCCGATTCTTAAGAGAATTAT-ACAGAACCAAACT-CCTGTTTGGA 1057
Query 1148 TCTTCAGTGGAGATGAAGATTCTGTAATTCCACTTCTTGGTTCAAGAACTTTG-GTAAAA 1206
||||||||||||| ||||||||||||||||||||| |||||||||| | ||| |
Sbjct 1058 TCTTCAGTGGAGACCAAGATTCTGTAATTCCACTTCAAAGTTCAAGAAC-ACGCGTACGA 1116
Query 1207 GAACTTGCAGATGATCTCAACTTCAATACCACAGTTCCTTATGGAGCTTGGTTCGACAAA 1266
|||||||| | |||||||||||||| ||||| ||||| |||||||| |||||| |||||
Sbjct 1117 GAACTTGCTCAGGATCTCAACTTCAAGACCACTGTTCCCTATGGAGCCTGGTTCCACAAA 1176
Query 1267 GGACAGGTTGGCGGATGGGT-AGTAGAGTATGGGAATCTACTGACATTCGCAACGGTGAG 1325
| ||||||||| || ||||| | ||||||||||||||||||||| || |||||||||||
Sbjct 1177 GAACAGGTTGGTGGCTGGGTCA-CAGAGTATGGGAATCTACTGACCTTTGCAACGGTGAG 1235
Query 1326 AGGAGCGGCTCATATGGTG-CCGTACT-CGCAGCCTTCACGAGCTTTACATTTGTTCACC 1383
||||||||||||||||||| || || | || |||| ||||||||| | || ||||||
Sbjct 1236 AGGAGCGGCTCATATGGTGGCC-TA-TGCGGAGCCCTCACGAGCTCTGCACATGTTCAGT 1293
Query 1384 AGCTTTGTG-CTTGGCCGGAAATTGCC 1409
| ||||||| || ||||||| ||||||
Sbjct 1294 ACCTTTGTGACT-GGCCGGAGATTGCC 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5