BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43781.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336831 jgi|Araly1|336831|fgenesh1_pg.C_scaffold_1003396 928 0.0
Ahg922868 jgi|Araly1|922868|scaffold_104149.1 599 1e-170
> Ahg336831 jgi|Araly1|336831|fgenesh1_pg.C_scaffold_1003396
Length=1467
Score = 928 bits (502), Expect = 0.0
Identities = 936/1137 (82%), Gaps = 63/1137 (6%)
Strand=Plus/Plus
Query 7 ATCCAAATTGATCTCCTCATGGATATATTTTCTCGAGTTCC-GCGACGACTATAGCAAGG 65
|||| ||| ||| ||||||||||||||||||| ||||||| || | | ||||||| | |
Sbjct 37 ATCCCAATCGATGTCCTCATGGATATATTTTCGAGAGTTCCTGCAAAGTCTATAGCTATG 96
Query 66 TTTCCTTGTGTATCTAAATTATGGGGA-TCCATACTTTGCCGTCAAGATTTTACTGAGTT 124
|||| ||| ||||| ||||| | |||| || |||||||||| || ||||| || |||||
Sbjct 97 TTTCGTTGCGTATCGAAATTCT-GGGATTCAATACTTTGCCATCCTGATTTCACAGAGTT 155
Query 125 GTTCT-TGAATATGTCTTTGACTCGTTC-ACGC-CTGCTCTTATTAACCTTCCAAGCTGA 181
| | | |||||| ||||| || ||| || || | |||||||| || ||||| || ||
Sbjct 156 G-TATATGAATACGTCTTCGATTCG-TCAAC-CTCTGCTCTTTTTCACCTTGGAA---GA 209
Query 182 AAATGGGAA-TAAATTCTTCTTCTCTTCACATCTGCCTCAGAA---TCCAGATGAGAACA 237
||||| || | |||||||||||||||| || |||||||| ||||||||||||||
Sbjct 210 TAATGGCAAGT-TGTTCTTCTTCTCTTCACCTCACCCTCAGAATCCTCCAGATGAGAACA 268
Query 238 CATCTCTTTGTACCCACCCACCTGTTATCATGTTTACCATAAGAATTCTCCTAGAGAGTT 297
|||||| ||||||||| | || ||||||||||| ||||||| ||||||||| ||| ||
Sbjct 269 CATCTC-TTGTACCCA--C-CC-GTTATCATGTTCACCATAACCATTCTCCTACAGATTT 323
Query 298 TTCATCTGAA-TTGGTTCTCCCTCTTCGTGGACTCAAT-TGTTGCCGAGATAAGGGAAGT 355
|||||||||| || ||| | |||||||||||| || | ||| | |||||||||||||||
Sbjct 324 TTCATCTGAAGTTAGTT-TTCCTCTTCGTGGATTC-GTCTGTAGTCGAGATAAGGGAAGT 381
Query 356 CTAGATACTATCATTATTTATAACCC-GATCACGGGAGAGTCTCTATCCTTACCCAAACT 414
||||||||||| |||||| ||||| | |||| ||||||| | |||||||||| || |
Sbjct 382 CTAGATACTATGGTTATTTGCAACCCTG-TCACAGGAGAGTTTGTATCCTTACCTAAGGT 440
Query 415 GGAATTGAAGAGAT-TTCATATTGTGACAAAG-CCTTATTTAGGATATGATCCGATTGAG 472
||| |||||||| | || ||| || ||| ||| ||||||||||| ||||||||||| ||
Sbjct 441 GGAGTTGAAGAG-TGTTAATACTGAGAC-AAGACCTTATTTAGGGTATGATCCGATCGAC 498
Query 473 AAACAGTTAAAAGTATTGTGCATCAAGTTTAG-TGAAATCCCGAGTACTGT-TGATGATC 530
||||||||||||||||||||||||||| || | ||| ||||| | ||| || |||||| |
Sbjct 499 AAACAGTTAAAAGTATTGTGCATCAAG-TTCGATGATATCCCAAATAC-GTGTGATGAGC 556
Query 531 ATCAAGTGTTGACATTGAAGAATGGAAAACATTTATGGAGAACAATTCAATACAAACCCC 590
||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 557 ATCAAGTTTTGACATTGGAGAATGGAAAACATTTATGGAGAACAATCCAATGCAAACCCC 616
Query 591 ATTATCCTAAATGTAATGGAATATGCTTAGATGGT-TTTCTGTATTATACAGCTCGGG-T 648
|||||||||||| | ||||||| ||| |||||||| || ||||||||||||| ||| |
Sbjct 617 ATTATCCTAAATCTGATGGAATTTGCATAGATGGTACTT-TGTATTATACAGC-AGGGTT 674
Query 649 CGATAGGTGGATGTGGGATTCCAAAATAGTTTGCTTCAATGTTAAGTCTGAGAAGTTTAG 708
||||| | |||| | | ||| | ||||| ||||| |||||| |||||||||||||||
Sbjct 675 CGATATGCGGATAAGCGTTTCTATGATAGTGTGCTTTGATGTTAGGTCTGAGAAGTTTAG 734
Query 709 GTTTATTGACATAGATGGATGCATGTTGATGACT-CATTCTTGTACTTTGATCAACTACA 767
||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 735 CTTTATCAACATAGATGAATGCATGTTGATGACTGC-TTCTTGTACTTTGATCAACTACA 793
Query 768 AGGGTAAATTAGATGCACTTCAGTTTACATTTTTGGGTCGAAGACAACTTGAGTTTTGGA 827
|||||||| ||| ||||||||||||| |||||||| || || || |||||||| |||
Sbjct 794 AGGGTAAACTAGGTGCACTTCAGTTTTCATTTTTGCCTCCAAAACGTCTTGAGTTCTGGG 853
Query 828 TTCTAGAAGATGCTGAGAAATGTATATGGTCCAAAGATATCTATATATTCTAGATATTGC 887
||||| |||||||| | |||| ||||||||||||||||||||| | ||| | | |
Sbjct 854 TTCTACAAGATGCTCAAAAATATATATGGTCCAAAGATATCTACACATT---GCC-T--C 907
Query 888 CTTCTTGGTGGGATAAC--A-TAGTTCAAAA-TACCGAGTTATTCATTGTTGGAATGACT 943
||| || ||| | ||| | ||||| || |||||||||| |||||||||||||||||
Sbjct 908 CTT-TT--TGGAACAACGTAGTAGTT-AAGCGTACCGAGTTAGTCATTGTTGGAATGACT 963
Query 944 GGTAGAGGTGAAGTTGTGTTGTCACCGTACTGTCTAGTACTAGAAC-CATGTTACATTGA 1002
| ||||||||||||||||| ||||||||||||| ||| || | ||| |||| || |
Sbjct 964 CCTGGAGGTGAAGTTGTGTTGACACCGTACTGTCTGGTA---GA-CGCATTTTACGTTTA 1019
Query 1003 TTAATTCAACCTCGAGAGGAGGAGTTTCACAAGAGTTCAAATACAAGGTCTTGAAGTGCT 1062
||| |||||||| ||||| | |||| |||||||||||||| ||||||||||| || || |
Sbjct 1020 TTACTTCAACCTAGAGAGCAAGAGTCTCACAAGAGTTCAAGTACAAGGTCTTAAAATG-T 1078
Query 1063 TATAAGGGTACGAGAGTTTACACTTCTCTAGACTATGCTGAGAATTTGAAACTTATG 1119
| |||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1079 T-TAAGCGTACGAGAGTTTACACCTCTCTAGACTATGTTGAGAATTTGAAACTTATG 1134
> Ahg922868 jgi|Araly1|922868|scaffold_104149.1
Length=733
Score = 599 bits (324), Expect = 1e-170
Identities = 395/427 (93%), Gaps = 14/427 (3%)
Strand=Plus/Plus
Query 695 TCTGAGAAGTTTAGGTTTATTGACATAGATGGATGCATGTTGATGACTCATTCTTGTACT 754
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTGAGAAGTTTAGTTTTATTGACATAGATGGATGCATGTTGATGACTCATTCTTGTACT 359
Query 755 TTGATCAACTACAAGGGTAAATTAGATGCACTTCAGTTTACATTTTTGGGTCGAAGACAA 814
||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 360 TTGATCAACTACAAGGGTAAATTAGGTGCACTTCAGTTTACATTTTTGTGTCAAAGACAA 419
Query 815 CTTGAGTTTTGGATTCTAGAAGATGCTGAGAAATGTATATGGTCCAAAGATATCTATATA 874
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 420 CTTGAGTTTTGGATTCTAGAAGATGCTGAGAAATATATATGGTCCAAAGATATC----TA 475
Query 875 TTCTAGATATTGCCTTCTTGGTGGGATAACATAGTTCAAAATACCGAGTTATTCATTGTT 934
| ||||||||||||| |||||| |||||||||||| | |||||||||||||||||
Sbjct 476 --C---ATATTGCCTTCTTTGTGGGACAACATAGTTCAACGTGCCGAGTTATTCATTGTT 530
Query 935 GGAATGACTGGTAGAGGTGAAGTTGTGTTGTCACCGTACTGTCTAGTACTAGAACCATGT 994
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 531 GGAATGACTGGTAGAGGTGAAGTTGTGTTGTCACAGTACTGTCTAGTA---GAACCATGT 587
Query 995 TACATTGATTAATTCAACCTCGAGAGGAGGAGTTTCACAAGAGTTCAAATACAAGGTCTT 1054
|||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 588 TACATTTATTACTTCAACCTTGAGAGCTGGAGTTTCACAAGAGTTCAAATACAAGGTCTT 647
Query 1055 GAAGTGCTTATAAGGGTACGAGAGTTTACACTTCTCTAGACTATGCTGAGAATTTGAAAC 1114
|||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 648 GAAGTG-TT-TAAGCGTACGAGAGTTTACACCTCTCTAGACTATGCTGAGAATTTGAAAC 705
Query 1115 TTATGTA 1121
|||||||
Sbjct 706 TTATGTA 712
Score = 372 bits (201), Expect = 4e-102
Identities = 270/302 (89%), Gaps = 10/302 (3%)
Strand=Plus/Plus
Query 344 GATAAGGGAAGTCTAGATACTATCATTATTTATAACCCGATCACGGGAGAGT-CTCTATC 402
||||||||||||||||||||||| |||||||||||||| |||| ||||||| || || |
Sbjct 3 GATAAGGGAAGTCTAGATACTATGGTTATTTATAACCCGGTCACAGGAGAGTCCT-TACC 61
Query 403 CTTACCCAAACTGGAATTGAAGAGAT-TTCATATTGTGACAAAG-CCTTATTTAGGATAT 460
|||||||||| ||||||||||||| | || ||| |||||| ||| ||||||||||| |||
Sbjct 62 CTTACCCAAAGTGGAATTGAAGAG-TGTTAATACTGTGAC-AAGACCTTATTTAGGGTAT 119
Query 461 GATCCGATTGAGAAACAGTTAAAAGTATTGTGCATCAAGTTTAGTGAAATCCC-GAGTAC 519
||||||||||| ||||||||||||||||||||||||||||| ||| |||||| || ||
Sbjct 120 GATCCGATTGACAAACAGTTAAAAGTATTGTGCATCAAGTTCGGTGGAATCCCGGA-TAT 178
Query 520 TGTTGATGATCATCAAGTGTTGACATTGAAGAATGGAAAACATTTATGGAGAACAATTCA 579
| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 179 TTTTGTTGATCATCAAGTGTTGACATTGAATAATGGAAAACATTTATGGAGAACAATCCA 238
Query 580 ATACAAACCCCATTATCCTAAATGTAATGGAATATGCTTAGATGGT-TTTCTGTATTATA 638
|| |||||||||||||||||||| |||||||||||| |||||||| ||| |||||||||
Sbjct 239 ATGCAAACCCCATTATCCTAAATCCAATGGAATATGCATAGATGGTGTTT-TGTATTATA 297
Query 639 CA 640
||
Sbjct 298 CA 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5