BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G43790.1

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473781 jgi|Araly1|473781|fgenesh2_kg.1__3735__AT1G43790.1         776    0.0  


> Ahg473781 jgi|Araly1|473781|fgenesh2_kg.1__3735__AT1G43790.1
Length=489

 Score =  776 bits (420),  Expect = 0.0
 Identities = 472/495 (95%), Gaps = 11/495 (2%)
 Strand=Plus/Plus

Query  10   CCACCTCAAGAAATAAATCATCAGAGCCTCACACATCAAACACAAGT-AATGGCCTCCAC  68
            ||||||||||||||||||||||  |||||||||| ||| |||||| | ||||||||||||
Sbjct  1    CCACCTCAAGAAATAAATCATC--AGCCTCACACTTCATACACAA-TCAATGGCCTCCAC  57

Query  69   GGA-T--TCAGTTTACCGTCCCACACCAACTCCAGACCATGACACTACTGTTGTAGTAGT  125
            ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   GGATTCATCAGTTTACCGTCCCACACCAACTCCAGACCATGACACTACTGTTGTAGTAGT  117

Query  126  TGTGTTTGTTTCTTTGGGTTGTGTCATGTTCTTGGCGTTTCTAGCGTTTGTTATCTGGTT  185
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  118  TGTGTTTGTCTCTTTGGGTTGTGTCATGTTCTTGGCGTTTCTAGCTTTTGTTATCTGGTT  177

Query  186  CTTGATCAAGAAGAGATCCAGGAAGCACCGTGAGAGATCTGAAGCGGTTCGCGTGGATGA  245
            ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct  178  CTTGATCAAGAAGAGATCCAGGAAGCACCGTGAGAAATCTGAGGCGGTTCGTGTGGATGA  237

Query  246  ACACTTTAAGATGAAGGAAGCTATAGTCGAAGGACCTAATGGACAAAAGTCTGTGGTGTT  305
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GCACTTTAAGATGAAGGAAGCTATAGTCGAAGGACCTAATGGACAAAAGTCTGTGGTGTT  297

Query  306  ATCAGTTGAGGATGATGTTAAGATCGAAGACGCGATCAAGAGAGAAGAGAAAGATCTGAA  365
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  298  ATCAGTTGAGGATGATGTTAAGATCGAAGACGCGATCAAGAGAGATGAGAAAGATCTGAA  357

Query  366  GAAAGATGGTGGAGTTGGATCATCAGTCGTTTCCCGTTCGTGAATGAGCTTTCTTCATTC  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  GAAAGATGGTGGAGTTGGATCATCAGTCGTTTCCCGTTCGTGAATGAGCTTTCTTCATTC  417

Query  426  ATAATGTTACCTATCTATTTATTTA-TATTAAAATTGTGGTTGTGTGTGAATCATTTGTT  484
            |||||||| || ||||||||||| | ||||| ||||||| || |||||||||||||||||
Sbjct  418  ATAATGTTGCCAATCTATTTATT-AGTATTATAATTGTG-TT-TGTGTGAATCATTTGTT  474

Query  485  TGGTGAAATaaaaaa  499
            |||||||||||||||
Sbjct  475  TGGTGAAATAAAAAA  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19039638911


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5