BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43800.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922881 jgi|Araly1|922881|scaffold_104162.1 1871 0.0
> Ahg922881 jgi|Araly1|922881|scaffold_104162.1
Length=1220
Score = 1871 bits (1013), Expect = 0.0
Identities = 1154/1222 (94%), Gaps = 9/1222 (1%)
Strand=Plus/Plus
Query 30 TCTTCTCTACTT-CACCATAAAAAATGCTTGCGCACAAGTCTCTTC-TCTCCTTTACCAC 87
|||||||| ||| |||||| ||||||||| |||||||||||| || ||||| |||||
Sbjct 1 TCTTCTCT-CTTCCACCATCCAAAATGCTTACGCACAAGTCTC-TCTTCTCCCACACCAC 58
Query 88 CCAATGGGCTACACTAATGCCATCTCCGTCTACTTTTCTCGCCTCTCGCCCCCGTGGACC 147
||||||| ||||||||| | ||||||||||||| ||||||||||||||||||| | ||||
Sbjct 59 CCAATGGCCTACACTAACGTCATCTCCGTCTACCTTTCTCGCCTCTCGCCCCCATCGACC 118
Query 148 GGCCAAGATCTCGGCCGTGGCAGCACCAGTGAGGCCGGCTCTAAAACACCAAAACAAAAT 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGCCAAGATCTCGGCCGTGGCAGCACCAGTGAGGCCGGCTCTAAAACACCAAAACAAAAT 178
Query 208 CCACACCATGCCACCGGAGAAAATGGAGATATTCAAATCTTTAGATGGATGGGCCAAGGA 267
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 CCACACCATGCCACCGGAGAAAATGGAGATTTTCAAATCTTTAGATGGATGGGCCAAGGA 238
Query 268 TCAAATCTTGCCTCTTCTCAAACCCGTTGACCAATGTTGGCAACCCGCTTCTTTCTTACC 327
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 239 TCAAATCTTGCCTCTTCTCAAACCGGTTGACCAATGTTGGCAACCCGCTTCTTTCTTACC 298
Query 328 CGACCCGGCCTTACCCTTCTCCGAGTTTACCGACCAGGTTCGTGAGCTGAGGGAAAGAAC 387
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 299 CGACCCGGCCTTACCCTTCTCCGAGTTCACCGACCAGGTGCGTGAGCTGAGGGAAAGAAC 358
Query 388 GGCCTCGCTGCCAGACGAATACTTCGTGGTGTTGGTTGGAGATATGATAACGGAGGACGC 447
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGCCTCATTGCCGGACGAATACTTCGTGGTGTTGGTTGGAGATATGATAACGGAGGACGC 418
Query 448 GTTGCCTACTTACCAGACGATGATCAACACCCTTGATGGCGTAAGGGACGAGACTGGTGC 507
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 419 GTTGCCTACTTACCAGACGATGATCAACACGCTCGACGGCGTAAGGGACGAGACTGGCGC 478
Query 508 GAGTGAGAGCGCGTGGGCAA-GTTGGACACGAGCGTGGACGGCTGAGGAGAACCGTCATG 566
|||||||||||| ||||| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 479 GAGTGAGAGCGCTTGGGCCATGT-GGACACGCGCGTGGACGGCTGAGGAGAACCGTCATG 537
Query 567 GTGATTTGTTGCGGACTTACTTGTACTTATCCGGTCGTGTTGATATGCTTATGGTTGAAC 626
||||||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct 538 GTGATTTGTTGCGGACTTACTTGTACTTATCTGGTCGGGTAGACATGCTTATGGTAGAAC 597
Query 627 GCACCGTTCAGCATCTCATCGGCTCGGGCATGGATCCAGGAACTGAGAACAATCCATACT 686
||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 GCACCGTACAGTATCTCATCGGCTCGGGCATGGATCCAGGAACGGAGAACAATCCATACT 657
Query 687 TAGGTTTCGTGTACACGTCATTCCAAGAGCGAGCCACATTTGTGTCTCACGGCAACACGG 746
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 658 TAGGTTTCGTGTACACGTCATTCCAAGAGCGAGCCACCTTCGTGTCTCACGGCAACACCG 717
Query 747 CAAGGCTAGCCAAGTCCGCAGGAGATCCTGTCCTCGCTCGCATCTGCGGAACCATTGCAG 806
|| ||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 718 CACGGCTAGCCAAGTCTGCCGGAGATCCTGTCCTCGCTCGAATCTGCGGCACCATTGCAG 777
Query 807 CTGACGAGAAGCGCCATGAAAACGCTTACGTACGCATCGTTGAGAAGCTCCTCGAGATCG 866
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 CCGATGAGAAGCGCCATGAAAACGCTTACGTACGCATCGTTGAAAAGCTCCTCGAGATCG 837
Query 867 ACCCTAACGGTGCAGTCTCAGCCGTGGCCGACATGATGCGGAAGAAGATCACAATGCCGG 926
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 838 ACCCTAACGGTGCAGTCTCAGCCGTCGCCGATATGATGCGGAAGAAGATTACAATGCCGG 897
Query 927 CTCATCTAATGACAGACGGTCGAGACCCGATGCTATTCGAACATTTCTCCGCCGTGGCTC 986
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 898 CTCATCTAATGACAGACGGTCAAGACCCGATGCTTTTCGAACATTTCTCCGCCGTGGCTC 957
Query 987 AGCGGCTAG-AGGTTTACACGGCGGATGATTACGCTGACATCTTGGAGTTTTTGGTTGGA 1045
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACGGCTAGGAG-TTTACACGGCGGATGATTACGCTGACATCTTGGAGTTTTTGGTTGGA 1016
Query 1046 CGGTGGAGATTGGAGAAGCTAGAAGGATTGACGGGTGAGGGCCAACGTGCACAGGAGTTT 1105
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1017 CGGTGGAGATTAGAGAAGCTAGAGGGATTGACGGGTGAGGGTCAACGTGCACAGGAGTTT 1076
Query 1106 GTGTGTGGGTTAGCTCAGAGGATTAGACGCCTTCAAGAGCGTGCAGACGAGAGAGCTAAG 1165
||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1077 GTGTGTGGGCTAGCGCAGAGGATTAGACGCCTTCAAGAGCGAGCTGACGAGAGAGCTAAG 1136
Query 1166 AAGCTTAAGAAGACCCATGAGGTTTGCTTTAGTTGGATCTTCGATAAGCAGATTAGTGTG 1225
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAGCTTAAGAAGCCCCATGAGGTTTGCTTTAGTTGGATCTTCGATAAGCAGATTAGTGTG 1196
Query 1226 TAAACTCTTGAAAATATCAAAC 1247
||||||||||||||||| ||||
Sbjct 1197 TAAACTCTTGAAAATAT-AAAC 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5