BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G43810.1 Length=354 Score E Sequences producing significant alignments: (Bits) Value Ahg336753 jgi|Araly1|336753|fgenesh1_pg.C_scaffold_1003318 497 2e-140 > Ahg336753 jgi|Araly1|336753|fgenesh1_pg.C_scaffold_1003318 Length=375 Score = 497 bits (269), Expect = 2e-140 Identities = 319/344 (93%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 10 AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCTTCTCGAGCAAGAACCAGAC 69 |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| Sbjct 7 AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCGTCAAGAGCAAGAAACAGAC 66 Query 70 ACGAAAGACTTGACGATCAACGTCAAGACAGAGATACTCAAACATGAGTTTGGTCCCATA 129 |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 67 ACGAAAGACTTGACGATCAACGTCGTGACAGAGATACTCAAACATGAGTTTGGTTCCATA 126 Query 130 AAGAGTTCATTCTCGTTCTCACCACACAAATTCTTCGAGGAAGACGTCAAGAAACAAGAA 189 || ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| Sbjct 127 AAAAGTTCATTCTCGTTCTCACCACAGAAATTCTTCGAGGAAGACCTGAAGAAACAAGAA 186 Query 190 CTTTATTTTTTCCTGATAGCAGTTGGAATCGAAGAGGATGACGCAAAACTTATGATGACC 249 ||||| || |||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 187 CTTTACTTCTTCCTGATAGCAGTTGGAATCGAAGAGGATGATGCAAAATTTATGATGATG 246 Query 250 GACATGATTTTTTACGTCTTGGGAAATATTGATGAGTTACGAGGAGTTTTGACATTGTTG 309 |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 247 GACATGATTTCTTACGTCTTGAGAAATATTGATGAGTTACGAGGAGTTTTGACACTGTTG 306 Query 310 TTGAAAGTGCAGTTCCCTTCATTCGAGCCGATAGAAGAACACTA 353 || ||||| |||||||||||| ||||||| |||||||| ||||| Sbjct 307 TTCAAAGTTCAGTTCCCTTCACTCGAGCCAATAGAAGAGCACTA 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12591344370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5