BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G43810.1

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg336753 jgi|Araly1|336753|fgenesh1_pg.C_scaffold_1003318           497    2e-140


> Ahg336753 jgi|Araly1|336753|fgenesh1_pg.C_scaffold_1003318
Length=375

 Score =  497 bits (269),  Expect = 2e-140
 Identities = 319/344 (93%), Gaps = 0/344 (0%)
 Strand=Plus/Plus

Query  10   AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCTTCTCGAGCAAGAACCAGAC  69
            |||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |||||
Sbjct  7    AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCGTCAAGAGCAAGAAACAGAC  66

Query  70   ACGAAAGACTTGACGATCAACGTCAAGACAGAGATACTCAAACATGAGTTTGGTCCCATA  129
            ||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||
Sbjct  67   ACGAAAGACTTGACGATCAACGTCGTGACAGAGATACTCAAACATGAGTTTGGTTCCATA  126

Query  130  AAGAGTTCATTCTCGTTCTCACCACACAAATTCTTCGAGGAAGACGTCAAGAAACAAGAA  189
            || ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct  127  AAAAGTTCATTCTCGTTCTCACCACAGAAATTCTTCGAGGAAGACCTGAAGAAACAAGAA  186

Query  190  CTTTATTTTTTCCTGATAGCAGTTGGAATCGAAGAGGATGACGCAAAACTTATGATGACC  249
            ||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  
Sbjct  187  CTTTACTTCTTCCTGATAGCAGTTGGAATCGAAGAGGATGATGCAAAATTTATGATGATG  246

Query  250  GACATGATTTTTTACGTCTTGGGAAATATTGATGAGTTACGAGGAGTTTTGACATTGTTG  309
            |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  247  GACATGATTTCTTACGTCTTGAGAAATATTGATGAGTTACGAGGAGTTTTGACACTGTTG  306

Query  310  TTGAAAGTGCAGTTCCCTTCATTCGAGCCGATAGAAGAACACTA  353
            || ||||| |||||||||||| ||||||| |||||||| |||||
Sbjct  307  TTCAAAGTTCAGTTCCCTTCACTCGAGCCAATAGAAGAGCACTA  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12591344370


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5