BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43860.1
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473787 jgi|Araly1|473787|fgenesh2_kg.1__3741__AT1G43860.1 1799 0.0
> Ahg473787 jgi|Araly1|473787|fgenesh2_kg.1__3741__AT1G43860.1
Length=1245
Score = 1799 bits (974), Expect = 0.0
Identities = 1100/1162 (95%), Gaps = 3/1162 (0%)
Strand=Plus/Plus
Query 37 AAAATTTAGTGGCGGCGAGAGGGAAACCAAAATTCGCGAGAGAGAAGTATGTCGAAGACG 96
|||| ||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||
Sbjct 1 AAAA-TTAGTGGCGGCGAGAGGGAAACCCAAATTCACGAGAGAGAAGAATGTCTAAGACG 59
Query 97 CTGGTGCAACCGGTAGGGCAAAAGAGGTTGACTAATGTTGCAGTGGTTCGTCTCAAAAAG 156
|||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 CTGGTGCAGCCTGTAGGTCAAAAGAGGTTGACGAATGTTGCAGTGGTTCGTCTCAAAAAG 119
Query 157 CAAGGCAATCGCTTCGAGATCGCTTGTTACAAGAATAAGGTCCTTTCATGGCGGTCTGGC 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAGGCAATCGCTTCGAGATCGCTTGTTACAAGAATAAGGTCCTTTCATGGCGGTCTGGC 179
Query 217 GTGGAGAAGGATATAGATGAAGTGCTACAGTCGCATACTGTTTATTCAAATGTTTCGAAA 276
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 180 GTGGAGAAGGATATAGATGAAGTGCTTCAGTCACATACTGTTTATTCAAATGTTTCGAAA 239
Query 277 GGAGTTCTTGCAAAATCGAAAGACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAA 336
||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGAGTTCTTGCCAAATCTAAAGACTTGATGAAGGCGTTTGGATCAGATGATCATACGAAA 299
Query 337 ATATGCATCGATATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCA 396
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 ATATGCATCGATATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAGAGAGAATCA 359
Query 397 CAGTTCTCAAGCCAGTTTCGGGATATAGCAACGATTGTTATGCAGAAAACTATCAACCCT 456
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 360 CAGTTCTCAAGTCAGTTTCGGGATATTGCAACGATTGTTATGCAGAAAACCATCAACCCT 419
Query 457 GAAACACAACGACCTTATACCATCAGCATGGTAGAGCGCCTAATGCATGAAATTCATTTT 516
||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 420 GAAACCCAACGCCCTTATACCATCGGCATGGTGGAGCGCCTAATGCATGAAATTCATTTC 479
Query 517 GCTGTTGATCCTCATAGTAATTCCAAGAAGCAGGCACTTGATGTCATCCGTGAGCTGCAA 576
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 GCGGTTGATCCTCATAGCAATTCCAAGAAGCAGGCGCTTGATGTCATCCGTGAGCTGCAA 539
Query 577 AAGCACTTCCCTATAAAGCGTTCTCCAATGAGACTGCGTCTTACTGTTCCTGTTCAAAAT 636
||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 540 AAGCAGTTCCCTATAAAGCGTTCTCCGATGAGACTGCGCCTCACTGTTCCTGTTCAAAAC 599
Query 637 TTCCCCTCGCT-TCTGGAGAAGCTAAAAGAATGGGATGGTAGTGTTGTCTCCAAAGACGA 695
|||||||| || | |||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 600 TTCCCCTCACTAT-TGGAGAAGCTAAAAGAATGGGACGCTAGCGTTGTCTCCAAAGACGA 658
Query 696 ATCTGGAACACAGATGTCCACTGTCTGCGAGATGGAACCGGGCCTATTCCGAGAGTGTGA 755
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 659 ATCTGGAACACAGATGTCCACTGTTTGCGAGATGGAACCAGGCCTATTCCGAGAGTGTGA 718
Query 756 TTCCCATGTGAGGAGTATCCAGGGAAGACTAGAAATACTCGCTGTATCAGTTCATGCAGA 815
||| |||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 TTCTCATGTGAGAAATATGCAGGGGAGACTAGAAATACTCGCTGTATCAGTTCATGCAGA 778
Query 816 AGGTGACACAAGCATGGATCATTACGATGAGCATGATGATATGGCATTGCAAACCCACAA 875
|||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 AGGTGATACAAACATGGATCATTACGATGAGCATGATGATATGGCACTGCAAACCCACAA 838
Query 876 GCCGTTGTTACCTGCTGAGACTGAGACTAAGGATTTGACCGATCCCGTCGTTGAACTTAG 935
|||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||
Sbjct 839 GCCGTTGTTACCTGCTGATACTGAGACTAAGGATTTGACCGATCCCGTCATCGAGCTTAG 898
Query 936 CAAGAAACTGCAGAAGCAAGAGATAAGTACTACAGATAACATAAAGCAAGAAGGTGGAGA 995
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||
Sbjct 899 CAAGAAACTGCAGAAGCAAGAGATAAGTACTGCAGATACCATAAAGCAAGAAGGAGGAGA 958
Query 996 AGAAAAGAAGGGGACCAAGTGCAGCACTTGCAACACGTTCGTTGGAGAGGCTAAGCAATA 1055
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 959 AGAAAAGAAGGGGACCAAGTGCAGCACTTGCAACACGTTCGTTGGGGAGGCTAAGGAATA 1018
Query 1056 CAGAGAGCACTGTAAGAGTGATTGGCACAAACACAACCTTAAGCGTAAGACTCGGAAACT 1115
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1019 TAGAGAACACTGTAAGAGTGATTGGCACAAACACAACCTTAAGCGTAAGACTCGTAAACT 1078
Query 1116 CCCTCCTATTAGTGCTGACGAATGCATGTCTGAGATTGACATGGACGACTCTAGAGCAGA 1175
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CCCTCCTCTTACTGCTGAAGAATGCATGTCTGAGATTGACATGGACGACTCTAGAGCAGA 1138
Query 1176 TTTGAAAGACTACTCTTTCTGA 1197
||||||||||||||||||||||
Sbjct 1139 TTTGAAAGACTACTCTTTCTGA 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5