BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43890.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473785 jgi|Araly1|473785|fgenesh2_kg.1__3739__AT1G43890.3 1219 0.0
> Ahg473785 jgi|Araly1|473785|fgenesh2_kg.1__3739__AT1G43890.3
Length=895
Score = 1219 bits (660), Expect = 0.0
Identities = 760/809 (94%), Gaps = 3/809 (0%)
Strand=Plus/Plus
Query 90 AAAAAAGGTTGGATTTTGATCGATGGGTTCTTCGTCAGGACAACCCGAATTTGATTACTT 149
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 AAAAAAGGTTCGATTTTTATCGATGGGTTCTTCGTCAGGACAACCCGAATTTGATTACTT 147
Query 150 GTTTAAGGTTTTATTGATCGGAGATTCTGGTGTTGGAAAGAGCTCTCTTTTGTTGAGTTT 209
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 148 GTTTAAGGTTTTATTGATCGGAGATTCTGGTGTTGGAAAGAGTTCTCTTTTGTTGAGTTT 207
Query 210 CACATCTAATACCTTTGATGATCTTTCTCCAACGATTGGTGTGGATTTTAAGGTTAAGTA 269
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 208 CACATCTAATACGTTTGATGATCTTTCTCCAACAATTGGTGTTGATTTTAAGGTTAAGTA 267
Query 270 TCTGACAATTGGAGAAAAGAAACTCAAGCTTGCGATTTGGGATACAGCTGGGCAAGAGAG 329
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TCTGACAATTGGGGAAAAGAAACTCAAGCTTGCGATTTGGGATACAGCTGGGCAAGAGAG 327
Query 330 ATTTAGGACGCTAACAAGTTCGTATTACAGAGGAGCTCAGGGTATAATTATGGTATATGA 389
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ATTTAGGACTCTAACAAGTTCGTATTACAGAGGAGCTCAGGGTATAATTATGGTATATGA 387
Query 390 TGTGACACGAAGAGACACGTTCACAAACCTATCAGACATATGGGCTAAGGAAATCGACCT 449
|||||||||| |||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 388 TGTGACACGACGAGATACATTCACAAACCTATCTGATATATGGGCTAAGGAAATCGACCT 447
Query 450 CTATTCGACTAATCAGGATTGCATTAAGATGCTTGTCGGGAATAAAGTTGATAAGGAGAG 509
||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 448 CTACTCGACCAATCAGGACTGCATCAAGATGCTTGTTGGGAATAAAGTTGATAAGGAGAG 507
Query 510 TGAAAGAGCTGTTTCTAAAAAAGAAGGCATAGACTTTGCTCGGGAGTACGGATGTTTGTT 569
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TGAAAGAGCTGTCTCGAAAAAAGAAGGCATAGACTTTGCTCGGGAGTACGGATGTTTGTT 567
Query 570 TCTGGAGTGTAGTGCAAAGACTCGAGTCAACGTTGAGCAATGTTTTGAAGAGCTTGTTCT 629
|||||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct 568 TCTGGAATGTAGTGCAAAAACTCGGGTTAATGTGGAGCAATGTTTTGAAGAGCTTGTTCT 627
Query 630 TAAGATATTGGAAACGCCGAGTCTTACTGCTGAAGGTTCGTCTGGCGGAAAGAAGAACAT 689
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 628 TAAGATATTGGAAACACCGAGTCTTACTGCTGAAGGTTCGTCTGGCGGGAAGAAGAACAT 687
Query 690 CTTCAAACAAAACCCCGCACAGACCACCAGTACCTCGTCGAGCTACTGCTGCTCGTCTTA 749
||||||||||||||| ||||| |||| |||| | ||||||||||||||||| ||||||||
Sbjct 688 CTTCAAACAAAACCCAGCACAAACCAGCAGTGCTTCGTCGAGCTACTGCTGTTCGTCTTA 747
Query 750 GACATGGTTTTACAGTTTATGACAAA-TTACACTC-TTGCTCATCATCTTGTTCTTGATT 807
||||||| ||||| |||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 748 GACATGGCTTTACGGTTTATGACAAAATTACACTCGTT-CTCATCATCTTGTTCTTGATT 806
Query 808 GTCTCTTTGTTTTCCTAAACCGCAGCATCTTGGATGTAAATCTCAACCCTGATTTGAAAG 867
|||| |||| || || |||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 807 GTCTTTTTGCTTCCCAAAACCGCAGCATCTTGGATGTATATCTTAACCCTGATTTCAAAG 866
Query 868 TTGTGTTCACTAGTTTCGAATCTCGGATT 896
|||||||| |||||||| ||||| |||||
Sbjct 867 TTGTGTTCCCTAGTTTCCAATCTGGGATT 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5