BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43900.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913593 jgi|Araly1|913593|Al_scaffold_0001_3847 1720 0.0
> Ahg913593 jgi|Araly1|913593|Al_scaffold_0001_3847
Length=1131
Score = 1720 bits (931), Expect = 0.0
Identities = 1071/1135 (94%), Gaps = 23/1135 (2%)
Strand=Plus/Plus
Query 16 ATGAAGAAAACTAGAAATGTTGCTTCTTCTCCTATTGAATGTGTCCACCTCCAGACCAAA 75
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGAAGAAAATTAGAAATGTTGCTTCTTCTCCTATTGAATGTGTCCACCTCCGGACCAAA 60
Query 76 CCCACCACCActcttgttcggtctttcttcttcttcctcttcaactctcaaacaatctct 135
| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 61 --C-CCACCACTCTTGTTCGGTCTTTCTTCTTCTTCTTCTTCAACTCCCAAACAATCTCT 117
Query 136 tcctttatcatcttctatctcttcctctgttccttcttctGGTTTTGCCAATCACCAAAC 195
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 118 TCCTTTATCATCTTCTATCTCTTCCTCTGTTTCTTCTTTTGGTTTTGCCAATCACAAAAC 177
Query 196 CTGACTAACCC-T-T-CTCCT-C-C-TCCT---CTCTCCGTCGCTCCCCTTCGCGGGGAT 246
||||| ||||| | | ||||| | | |||| |||||||||||||||||||| ||||||
Sbjct 178 CTGACAAACCCATCTCCTCCTCCGCTTCCTCCACTCTCCGTCGCTCCCCTTCGTGGGGAT 237
Query 247 GCCAATTCTCCACCGCCGGAATCTTCTTCTTCTCCGGCGACGAA-----ATC-TTCT--T 298
|||||||| |||||||||||||||||||||||||||||| |||| ||| | || |
Sbjct 238 GCCAATTCGCCACCGCCGGAATCTTCTTCTTCTCCGGCGGCGAACTCTGATCATCCTAGT 297
Query 299 T-AATGATTTCTTCTAGAGATCCCAATGCCCTCTTTAGCGGCGGTGGAATCAGCTTTTTA 357
| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 298 TCCATGATTTCTTCTAGAGATCCCGATGCTCTCTTTAGCGGCGGTGGAATCAGCTTTTTA 357
Query 358 GCAGGAGTTAGAACTGTGAAGTTTAGTTATGGTTATTCTAGTCTTAAAGGTAAAAGAGCA 417
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 GCAGGAGTTAGAACTGTGAAGTTTAGTTATGGATATTCTAGTCTTAAGGGTAAAAGAGCA 417
Query 418 ACAATGGAGGATTACTTCGAAACTAGAATCTCTGATGTTAATGGACAAATGGTTGCTTTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACAATGGAGGATTACTTCGAAACTAGAATCTCTGATGTTAATGGACAAATGGTTGCTTTC 477
Query 478 TTTGGTGTCTTTGATGGTCATGGTGGAGCAAGAACTGCAGAATATCTTAAAAACAATCTT 537
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 TTTGGTGTCTTCGATGGTCATGGTGGAGCAAGAACTGCTGAATATCTTAAAAACAATCTT 537
Query 538 TTCAAGAATTTAGTTAGTCATGATGATTTTATCTCAGACACTAAGAAAGCTATTGTTGAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCAAGAATTTAGTTAGTCATGATGATTTTATCTCAGACACTAAGAAAGCTATTGTTGAA 597
Query 598 GTTTTTAAGCAGACAGATGAAGAGTATCTTATTGAAGAGGCAGGACAACCGAAGAATGCT 657
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 598 GTTTTTAAGCAGACAGATGAAGAGTATCTTATTGATGAGATAGGACAACCGAAGAATGCT 657
Query 658 GGCTCGACTGCTGCGACTGCTTTTCTTATAGGTGATAAGTTGATTGTTGCTAACGTTGGT 717
|||||||||||| | |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 658 GGCTCGACTGCTTCAACTGCTTTGCTTATAGGTGATAAGTTGATTGTTGCTAATGTCGGT 717
Query 718 GATTCTAGAGTTGTAGCGTC-AAGAAATGGTTCAGCTGTTCCACTCTCTGATGATCATAA 776
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 718 GATTCTAGAGTTGTAGCGTCGAA-AAATGGTTCAGCTGTTCCACTGTCTGATGATCATAA 776
Query 777 ACCTGATAGATCAGATGAGCGACAACGGATTGAAGATGCTGGTGGCTTTATTATTTGGGC 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACCGGATAGATCAGATGAGCGACAACGGATTGAAGATGCTGGTGGCTTTATTATTTGGGC 836
Query 837 TGGAACATGGCGAGTTGGTGGAATTCTTGCGGTCTCTCGGGCTTTTGGAGATAAGCAACT 896
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 837 TGGAACATGGCGAGTTGGTGGAATTCTTGCGGTCTCTCGGGCATTTGGGGATAAGCAACT 896
Query 897 TAAGCCATATGTGATTGCGGAGCCAGAAATTCAGGAGGAGGATATAAGCACATTGGAGTT 956
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 TAAACCATATGTGATTGCAGAGCCAGAAATTCAGGAGGAGGATATAAGCACGTTGGAGTT 956
Query 957 TATTGTTGTTGCTAGTGATGGACTGTGGAATGTGTTGTCAAACAAGGATGCCGTGGCAAT 1016
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TATTGTTATTGCTAGTGATGGACTGTGGAATGTGTTGTCAAACAAGGATGCCGTGGCAAT 1016
Query 1017 AGTACGAGACATTTCAGATGCGGAAACAGCAGCAAGAAAGCTTGTGCAAGAAGGTTACGC 1076
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 AGCACGAGACATTTCAGATGCGGAAACAGCAGCAAGAAAGCTTGTGCAAGAAGCCTACGC 1076
Query 1077 ACGGGGTAGCTGCGACAATATCACTTGCATTGTTGTACGATTCGAGGTTTCTTGA 1131
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 TCGAGGTAGCTGCGACAATATCACTTGCATTGTTGTTCGATTCGAGGTTTCTTGA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5