BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43910.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480076 jgi|Araly1|480076|fgenesh2_kg.3__2777__AT2G04260.1 501 6e-141
Ahg887665 jgi|Araly1|887665|Al_scaffold_0340_2 283 2e-75
Ahg916117 jgi|Araly1|916117|Al_scaffold_0008_868 265 9e-70
> Ahg480076 jgi|Araly1|480076|fgenesh2_kg.3__2777__AT2G04260.1
Length=702
Score = 501 bits (271), Expect = 6e-141
Identities = 360/403 (89%), Gaps = 6/403 (1%)
Strand=Plus/Plus
Query 1035 GATATCTTTGTCTGGTCTATTGAACTTTGTTGATGGACTTTGGTCAAGTTGTGGAGAAGA 1094
|||||||||||||||||||||||||||||| || || |||||||| ||||| ||||||||
Sbjct 303 GATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGGCTTTGGTCGAGTTGCGGAGAAGA 362
Query 1095 GAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTTGCTTAGACC 1154
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 363 AAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTTACTTAGACC 422
Query 1155 AGGACGGATGGATGTTCATATTCTCATGGACAATTGTACTCCCTTTGTGTTCAAGAAGCT 1214
||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGGAAGAATGGATGTTCACATTCTCATGGACAATTGTACTCCCTTTGTGTTCAAGAAGCT 482
Query 1215 TGTGGCTTTGTACCTTAAAACCGATGAGCATGTCTTGTTTGATCCCATTGAGAAGCTCAT 1274
||||||| ||||||||||||| ||||| |||||| ||||||||||||| ||||| || |
Sbjct 483 TGTGGCTATGTACCTTAAAACTGATGACCATGTCCTGTTTGATCCCATCGAGAAACTTGT 542
Query 1275 TC-TTGAAGTGAGT-TCGACTCCCGCTGAAGTCACGCAGCAGCTCATGGCGAGTAAGAAC 1332
| |||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 543 -CATTGATGTGAGTGTA-ACTCCGGCTGAAGTCACGCAGCAGCTCATGGCGAGTAAGAAC 600
Query 1333 GCTGATATCGCGCTTAAAGGCCTTGCT-GAATTCTTGGAGAACAAGAAGTTGAAAAAGGG 1391
|||||| ||||||||||||| || || |||||| | || ||||||||| |||| ||||
Sbjct 601 GCTGATGTCGCGCTTAAAGGTCTA-CTCGAATTCCTCGAAAACAAGAAGATGAAGAAGGA 659
Query 1392 AGAAGATTCTAGTGTGGAGGAAGAGGGAGAGATTGAAGATGCT 1434
||||||| | | || ||||||||||| |||||||||||||||
Sbjct 660 AGAAGATGCCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 702
Score = 215 bits (116), Expect = 9e-55
Identities = 167/191 (87%), Gaps = 5/191 (3%)
Strand=Plus/Plus
Query 793 ATGGTAGCTGCCATTGCTAATCATATGAAGTATC-ATATCTATGATCTTCAGATTCAAAG 851
||||| ||||| || |||||||| ||||| || | ||||||||||||| |||||||| ||
Sbjct 1 ATGGTGGCTGCAATAGCTAATCACATGAACTA-CAATATCTATGATCTCCAGATTCAGAG 59
Query 852 TGTTAGAGATGATGGTGAGTTGCGGGAGATTCTTACTTCGACCAAGAACCGGTCGATTCT 911
|||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||
Sbjct 60 TGTTAGAGATGATGGTGAGTTGCGGGAGATTCTTACCGCCACCAAGAACAGGTCAATTCT 119
Query 912 TCTTATTGAAGATATTGATTGTGGAGCTGATGCTTCTCGTAGACGTCagagtaagaagaa 971
||| |||||||| |||||||||||||||||||| ||||||||||| |||| || || |
Sbjct 120 TCTCATTGAAGACATTGATTGTGGAGCTGATGCATCTCGTAGACGCCAGACCAA-AA-AT 177
Query 972 ggaagaagatg 982
| |||||||||
Sbjct 178 G-AAGAAGATG 187
> Ahg887665 jgi|Araly1|887665|Al_scaffold_0340_2
Length=504
Score = 283 bits (153), Expect = 2e-75
Identities = 322/401 (80%), Gaps = 22/401 (5%)
Strand=Plus/Plus
Query 207 TTTCACTTTTGTGATAGAGCAAC-GTTGGGAG-TTTGTTGAGAATCAGACGTTCCGTGCT 264
|||||| ||||||| |||| || |||| | |||| || |||||||| ||||||||
Sbjct 90 TTTCACCCTTGTGATCGAGC-ACAAATGGGGGTTTTG-CGATAATCAGACTTTCCGTGCG 147
Query 265 GCTGAAGTTTAC-TT-ACCTACCTGTCTCGCCGGACTTTCTACAGGCA-AACTTCTTGTG 321
|| ||||||||| || | | | |||| |||||||| || || || | |||| || |||
Sbjct 148 GCCGAAGTTTACTTTAAGAT-GC-GTCTTGCCGGACTCTCCACCGG-ACAACTCCTCGTG 204
Query 322 GGTTCAAGTAATCTTAAGAATCCAGCTGCTGAGCCAAAACTTGGTATCCCTGTGAACACT 381
||||| ||| |||| |||||||| | ||||||||||| ||||| |||||||| |||||
Sbjct 205 GGTTCGAGTGATCTCAAGAATCCGGAGGCTGAGCCAAATCTTGGAATCCCTGTCAACACA 264
Query 382 AAGATCATTGATAACTTTGAAGGGATTCATCTAGAATGGACTCTTCACTCTGTTGAAAC- 440
|||||| ||||| | ||||||||||||||||| || |||||||| || | ||||| | |
Sbjct 265 AAGATCGTTGATGAGTTTGAAGGGATTCATCTTGAGTGGACTCTACATTGTGTTG-AGCT 323
Query 441 TAAGAAG-TATCTACC--CGAAAAACGGTACTTTCAT-TTGACATGTAAGAAGGAGTTTC 496
|||| || |||| || ||| |||||||||||| || || || ||||||||||||||||
Sbjct 324 TAAG-AGTTATC--CCTTCGAGAAACGGTACTTTAATCTT-ACTTGTAAGAAGGAGTTTC 379
Query 497 GTGAGAAGATAATGACGGATTACTTCACTTACTTAGCGAAATCAGCGGAGAAGATAATGA 556
|||||||||||||||| |||||||| || ||| |||||| |||||| |||||||||||||
Sbjct 380 GTGAGAAGATAATGACAGATTACTTGACATACATAGCGACATCAGCAGAGAAGATAATGA 439
Query 557 GCCATCGCGAGAATCTCAAGATCTA-TACTTATAACCAAGA 596
| ||||| || || ||| ||||| | |||||| || |||
Sbjct 440 GACATCGTGAAAAGCTCTTCATCTACT-CTTATAGCCGAGA 479
> Ahg916117 jgi|Araly1|916117|Al_scaffold_0008_868
Length=543
Score = 265 bits (143), Expect = 9e-70
Identities = 284/350 (81%), Gaps = 18/350 (5%)
Strand=Plus/Plus
Query 256 TTCCGTGCTGCTGAAGTTTAC-TT-ACCTACCTGTCTCGCCGGACTTTCTACAGGCA-AA 312
|||||||| || ||||||||| || | | | |||| |||||||| || || || | ||
Sbjct 178 TTCCGTGCGGCCGAAGTTTACTTTAAGAT-GC-GTCTTGCCGGACTCTCCACCGG-ACAA 234
Query 313 CTTCTTGTGGGTTCAAGTAATCTTAAGAATCCAGCTGCTGAGCCAAAACTTGGTATCCCT 372
|| || |||||||| ||| |||| |||||||| | ||||||||||| ||||| ||||||
Sbjct 235 CTCCTCGTGGGTTCGAGTGATCTCAAGAATCCGGAGGCTGAGCCAAATCTTGGAATCCCT 294
Query 373 GTGAACACTAAGATCATTGATAACTTTGAAGGGATTCATCTAGAATGGACTCTTCACTCT 432
|| ||||| |||||| ||||| | ||||||||||||||||| || |||||||| || | |
Sbjct 295 GTCAACACAAAGATCGTTGATGAGTTTGAAGGGATTCATCTTGAGTGGACTCTACATTGT 354
Query 433 GTTGAAAC-TAAGAAG-TATCTACC--CGAAAAACGGTACTTTCAT-TTGACATGTAAGA 487
|||| | | |||| || |||| || ||| |||||||||||| || || || |||||||
Sbjct 355 GTTG-AGCTTAAG-AGTTATC--CCTTCGAGAAACGGTACTTTAATCTT-ACTTGTAAGA 409
Query 488 AGGAGTTTCGTGAGAAGATAATGACGGATTACTTCACTTACTTAGCGAAATCAGCGGAGA 547
||||||||||||||||||||||||| |||||||| || ||| |||||| |||||| ||||
Sbjct 410 AGGAGTTTCGTGAGAAGATAATGACAGATTACTTGACATACATAGCGACATCAGCAGAGA 469
Query 548 AGATAATGAGCCATCGCGAGAATCTCAAGATCTA-TACTTATAACCAAGA 596
|||||||||| ||||| || || ||| ||||| | |||||| || |||
Sbjct 470 AGATAATGAGACATCGTGAAAAGCTCTTCATCTACT-CTTATAGCCGAGA 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5