BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43980.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473794 jgi|Araly1|473794|fgenesh2_kg.1__3748__AT1G43980.1 2516 0.0
Ahg473633 jgi|Araly1|473633|fgenesh2_kg.1__3587__AT1G31430.1 60.2 5e-08
> Ahg473794 jgi|Araly1|473794|fgenesh2_kg.1__3748__AT1G43980.1
Length=1796
Score = 2516 bits (1362), Expect = 0.0
Identities = 1655/1799 (92%), Gaps = 9/1799 (1%)
Strand=Plus/Plus
Query 1 ATGCCGTCCTCTCTCTACTTCTCGCGTCTCGTAAACCGCTCTTTACTCTCAAAGTCTCCA 60
|||||||| ||| |||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 1 ATGCCGTCATCTTTCTACTTCTCGCGTCTCGTAGACCGCTCTTTGCTCTCAAAGTGTCCG 60
Query 61 ACTTTAGCCAAAATCGTCCATGCCCAGCTCCTGGAAGCTGGATTCGTACGCACTACTTAT 120
|||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||| ||||||
Sbjct 61 ACTTTAACCAGAATCGTCCATGCCCAGCTCCTCAAAGCTGGTTTCATACGCACAACTTAT 120
Query 121 TGGGGAAATCGCTGCCTTCAGCTCTACTTCAAATCCGGATCCGTCATCAATGCCCTCCAA 180
|||||||| || |||||||||||||||||||||||||| |||||||| |||| ||| |
Sbjct 121 TGGGGAAACCGTTGCCTTCAGCTCTACTTCAAATCCGGCGCCGTCATCGATGCTTTCCGA 180
Query 181 CTGTTCGACGATATTCCTGATAAGAACACCATAACCTGGAACGTTTGCTTAAAGGGTTTG 240
|||||||||||||||||||||||||||| ||| | |||||||||||||| ||||| |||
Sbjct 181 TTGTTCGACGATATTCCTGATAAGAACACTATATCATGGAACGTTTGCTTGAAGGGCTTG 240
Query 241 TTTAAAAATGGTTATCTCAATAACGCACTTGACCTGTTCGACGAAATGCCTGAACGAGAT 300
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TTTAAAAATGGTTTTCTCAATAACGCACTTGACCTGTTCGATGAAATGCCTGAACGAGAT 300
Query 301 GTTGTTAGCTGGAATACAATGATTTCAGGGTTGGTTTCTTGTGGGTTTCATGAATATGGG 360
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 301 GTTGTTAGCTGGAATACAATGATTTCAGGGTTTGTTTCTTGTGGGTTTCCTGAATATGCG 360
Query 361 ATTAGGGTTTTCTTCGATATGCAGAGATGGGAGATTAGACCAACGGAGTTTACTTTTTCG 420
|||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 361 ATTAGGGTTTTCTTTGATATGCAGAGATGGGTGATTCGACCAACGGAGTTTACGTTTTCG 420
Query 421 ATTCTAGCTTCTCTTGTTACTTGTGTTCGACATGGGGAACAGATTCATGGTAATGCTATT 480
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATTCTAGCTTCTCTTGTTTCTTGTGTTCGTCATGGGGAACAGATTCATGGTAATGCTATT 480
Query 481 TGTAGTGGTGTGAGTAGGTATAATTTGGTTGTGTGGAACTCTGTTATGGATATGTATAGA 540
|||||||| || |||| || ||||||||| |||||||| || | |||||||||||||||
Sbjct 481 TGTAGTGGCGTTAGTAAGTCTAATTTGGTGGTGTGGAATTCACTGATGGATATGTATAGA 540
Query 541 AGATTAGGAGTTTTTGATTACGCGTTATCGGTGTTTTTAACTATGGAGGATAGAGATGTT 600
||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 541 AGAATAGGAGTTTTTGATTATGCGATATCGGTGTTTTTAACTATGGAGGATAGAGATGTT 600
Query 601 GTCTCGTGGAACTGTTTGATTTTGTCTTGTTCCGATTCTGGTAATAAGGAAGTGGCTTTG 660
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 601 GTCTCGTGGAACTGTTTGATTTTGTCTTGTTCTGATTCTGGTAACAAAGAAGTGGCTTTG 660
Query 661 GATCAGTTTTGGTTGATGAGAGAAATGGAGATTCAACCTGATGAATATACAGTTTCGATG 720
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 661 GATCAGTTTTGGTTAATGAGAGAAATGGAGAATAAACCTGATGAATATACAGTTTCGATG 720
Query 721 GTTGTGTCTATTTGCTCTGATTTACGAGAACTGAGTAAGGGTAAGCAGGCTCTTGCTCTT 780
||||||||||||||||||||||||| ||| || | ||||||||||||||| ||||||||
Sbjct 721 GTTGTGTCTATTTGCTCTGATTTACAAGATTTGTGCAAGGGTAAGCAGGCTATTGCTCTT 780
Query 781 TGTATCAAGATGGGGTTTTTATCTAACAGTATTGTTTTAGGAGCTGGGATTGATATGTTT 840
|| ||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||
Sbjct 781 TGCATCAAGATGGGGTTTTTATTTAACAACATTGTTTTAGGATCTGGGATTGACATGTTT 840
Query 841 TCCAAATGTAACAGATTGGATGATTCGGTTAAACTTTTTAGAGAGTTGGAGAAATGGGAT 900
|||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 841 TCCAAATGCAACAGATTGGATGATTCGGTTAAGCTTTTTAGACAGTTGGAGAAATGGGAT 900
Query 901 TCAGTGTTGTGCAATTCCATGATCGGTAGCTATTCGTGGCATTGTTGTGGAGAAGATGCT 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TCGGTGTTGTGCAATTCCATGATCGGTAGCTATTCGTGGCATTGTTGTGGAGAAGATACT 960
Query 961 CTT-CGGCTCTTTATCCTTGCCATGACGCAGAGTGTTAGGCCTGATAAGTTCACGTTCAG 1019
||| | ||||||||| |||| |||| |||||| |||| || |||||||||||||| ||
Sbjct 961 CTTAC-GCTCTTTATTGTTGCAATGAGGCAGAGCATTAGTCCCGATAAGTTCACGTTTAG 1019
Query 1020 TAGCGTTCTGAGCTCAATGAATGCTGTGATGCTAGATCACGGAGCAGACGTTCATTCTTT 1079
||||||||||||||| |||||||| |||||||||| |||||||||| | |||||| ||||
Sbjct 1020 TAGCGTTCTGAGCTCGATGAATGCCGTGATGCTAGGTCACGGAGCACAAGTTCATGCTTT 1079
Query 1080 GGTTATTAAGTTAGGGTTTGATTTGGATACGGCAGTAGCTACCTCACTCATGGAGATGTA 1139
|| || ||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||
Sbjct 1080 GGCTACTAAGTTAGGGTTTGATTCGGACACGACAGTAGCCACCTCACTCATGGAGATGTA 1139
Query 1140 CTTCAAAACCGGTTCAGTTGATTTAGCAATGGGAGTGTTTGCCAAAACAGATGGAAAAGA 1199
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1140 CTTCAAAACCGGTTCAGTTGATTCAGCAATGGGAGTGTTTGCCATAACAGATGAAAAAGA 1199
Query 1200 TTTGATCTTTTGGAACACAGTGATAATGGGCTTGGCGAGAAACAGTAGAGCAGTTGAGTC 1259
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1200 TTTGATCTTTTGGAACACAGTGATTATGGGTTTGGCGAGAAACAGCAGAGCAGTTGAGTC 1259
Query 1260 CCTTGCCATTTTCAATCAATTGCTGATGAAC-CAA-A-GTCTGAAACCCGATAGAGTGAC 1316
|||| | |||||||||||||||||||| || || | |||||||||| |||||||||||
Sbjct 1260 CCTTTCTGTTTTCAATCAATTGCTGATGGACGAAAGAGGTCTGAAACCGGATAGAGTGAC 1319
Query 1317 GTTAATGGGTATCTTAGTAGCTTGTTGTTATGCTGGCTTTGTTAATGAAGGAATTCAGAT 1376
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1320 TTTCATGGGTATCTTAGTAGCTTGTTGTTATGCGGGCTTTGTTAATAAAGGAATTCAGAT 1379
Query 1377 ATTCTCTTCAATGGAAAAGGCTCATGGAGTTAATCCCGGGAACGAGCATTACGCCTGTAT 1436
||||||||||||||||||| ||||||| ||| |||| || ||||||||||||||||||||
Sbjct 1380 ATTCTCTTCAATGGAAAAGACTCATGGTGTTGATCCTGGCAACGAGCATTACGCCTGTAT 1439
Query 1437 AATCGAATTGCTTTGCAGAGTC-GGTATGATCAATGAAGCAAAGGACATTGCTGACAAGA 1495
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1440 AATCGAATTGCTTTGCAGAG-CAGGTATGATCAATGAAGCAAAGGACATTGCTGACAAGA 1498
Query 1496 TACCTTTTGAACCAAGCTCTCATATCTGGGAACCGATTCTCTGTGCATCTCTTGATCTTG 1555
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1499 TACCTTTTGAACCAAGCTCTCATATCTGGGAACCGATTCTCTGTGCATCTGTAGATGTTG 1558
Query 1556 GAGACACAAGACTCGCTGAGACTGTAGCGAAAACTA-TGTTAGAATCTGAACCAAAGTCA 1614
||||||| ||||||||||| | ||||||||||| || || ||||||| ||||||||||||
Sbjct 1559 GAGACACGAGACTCGCTGAAAGTGTAGCGAAAA-TAATGATAGAATCGGAACCAAAGTCA 1617
Query 1615 TCTTTTCCTTACCTGGTTCTGATTAAGATATACGAGATGACATGGCGCTGGGAAAATTCA 1674
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1618 TCGTTTCCTTACCTGGTTCTGATTAAGCTATACGAGATGACATGGCGCTGGGAAAATTCA 1677
Query 1675 GTGAAGTTAAGATACGCCATGAATGAACATAAGTTGAAATCGGCTCAAGGATCGAGCAAG 1734
||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1678 GTGAAGTTAAGATACATCATGAATGAACATAAATTGAAATCGACTCAAGGATCGAGCAAG 1737
Query 1735 ATCAGTATAGAGAGCAGTGTGTTCAGCTTCGAGGCTGACCAGTTGCAAATTCATGGAGG 1793
||| ||||| |||||||||||| ||||||||| ||||| |||||||||||||| |||||
Sbjct 1738 ATCGGTATAAAGAGCAGTGTGTACAGCTTCGAAGCTGAACAGTTGCAAATTCACGGAGG 1796
> Ahg473633 jgi|Araly1|473633|fgenesh2_kg.1__3587__AT1G31430.1
Length=1774
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 275 TGTTCGACGAAATGCCTGAACGAGATGTTGTT 306
||||||||||||||||||||||||||||||||
Sbjct 308 TGTTCGACGAAATGCCTGAACGAGATGTTGTT 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5