BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44000.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922886 jgi|Araly1|922886|scaffold_104167.1 1277 0.0
> Ahg922886 jgi|Araly1|922886|scaffold_104167.1
Length=820
Score = 1277 bits (691), Expect = 0.0
Identities = 780/823 (95%), Gaps = 6/823 (1%)
Strand=Plus/Plus
Query 176 TGTTGTTATGTTCCTCCATGGCCTGTTACATCGTTCCTTATTACCACCATCCTGTTTTGT 235
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 TGTTGTTATGTTCCTCCATGGCCTGTTACATCGTTCCTTATTACCACAATCCTGTTTTGT 63
Query 236 CTCATCCCAATAGAGAAATCTTCAGTCACCGTCACCACCACCACCACCGTTTCTGCAACA 295
||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 64 CTCGTCCCAATAGAGAAATCATCAGTCACCGT------CACCACCACCGTTTCTGCAACA 117
Query 296 ATCTCTTGAATAGAAGAATTAGTGTTCCTCGAAGCTCCGCTATTAGTGACGGTGGTGTCT 355
| |||||||| | ||||||||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 118 AGCTCTTGAAGACAAGAATTAGGGTTCCTCGAAGTTCCGCCATTAGTGACGGTGGTGTTT 177
Query 356 CCTACAATACTCTAGTCTCCGAGGCGGTGAGGCTTTTGGTTCCACAAGCAAACTTTGATT 415
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 CCTACAATACTCTAGTCTCCGAGGCGGTGAGGCTTTTGGTTCCACAAGCCAACTTTGATT 237
Query 416 CTTCAAAGCTTAAAGTTGAGTTCTTAGGAGAGTTATTGGAGAACAAGAGTAACGGAGGAA 475
| || ||||||||||||||||||||||| |||||||||||||||||||||| ||| || |
Sbjct 238 CCTCGAAGCTTAAAGTTGAGTTCTTAGGGGAGTTATTGGAGAACAAGAGTAGCGGCGGGA 297
Query 476 TTATTACGCCGCGGACTTATATTCTTTCGCATTGTGACTTCACTGCTAACTTAACGTTAA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 TTATTACGCCGCGGACTTATATTCTTTCGCATTGTGACTTCACTGCTAACTTAACCTTAA 357
Query 536 CAATCTCAAACGTTATCAATCTGGATCAACTAGAAGGCTGGTACAAGAAAGATGATGTGG 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CAATCTCCAACGTTATCAATCTGGATCAACTAGAAGGCTGGTACAAGAAAGATGATGTGG 417
Query 596 TTGCTGAGTGGAAGAAGGTGAATGATGAGCTGCGTTTACATATTCATTGTTGTGTGAGTG 655
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 418 TTGCTGAGTGGAAGAAGGTGAATGACGAGTTGCGTTTACATATTCATTGTTGCGTGAGTG 477
Query 656 GTATGAGTTTATTGCAGGATGTTGCTGCTGAGCTTAGGTATCATATTTTCTCCAAGGAAT 715
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 478 GTATGAGTTTATTGCAGGATGTGGCTGCAGAGCTTAGGTATCATATTTTCTCCAAGGAAC 537
Query 716 TGCCTTTGGTACTTAAAGCTGTGGTGCATGGAGATTCAGTTATGTTTAGAGAGAATCCTG 775
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 538 TGCCTTTGGTACTAAAAGCTGTGGTCCATGGAGATTCAGTTATGTTTAGAGAGAACCCTG 597
Query 776 AGCTAATGGATGCTTATGTATGGGTTTATTTCCATTCAAGCACACCTAAGTACAATCGGA 835
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 AGCTAATGGATGCTTATGTATGGGTTTATTTCCATTCAAGCACACCTAAATACAATCGGA 657
Query 836 TCGAGTGTTGGGGACCTCTTAAGGATGCTGCGAAGGGAAAGCAGCAGGGCAATCATCAAG 895
||||||||||||||||||| || |||||||| |||||||||||| |||| ||||||||||
Sbjct 658 TCGAGTGTTGGGGACCTCTCAACGATGCTGCAAAGGGAAAGCAGAAGGGAAATCATCAAG 717
Query 896 GCTTCTTGAGTTCGACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCT 955
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GCTTCTTGAGTTCAACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCC 777
Query 956 TATTTACGTTTCTTCTGTGAGACAAAGTTGTACATTCTCCTGT 998
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCTTTACGTTTCTTCTGTGAGACAAAGTTGTACATTCTCCTGT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5