BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44010.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314116 jgi|Araly1|314116|fgenesh1_pm.C_scaffold_1002896 811 0.0
> Ahg314116 jgi|Araly1|314116|fgenesh1_pm.C_scaffold_1002896
Length=684
Score = 811 bits (439), Expect = 0.0
Identities = 593/668 (89%), Gaps = 7/668 (1%)
Strand=Plus/Plus
Query 35 ATGGAGGGGCCTTTGCTAACCAAGAACAAGCACATCAAAATCCATGGCGATTCTTCATCA 94
||||| || |||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 1 ATGGAAGGCCCTTTGCTAACCAAGAGTGAGCACATCAAAATCGATGGTGATTCTTCATCG 60
Query 95 AATGATGAGCATAATGTCAACATTACAATCACTAACGATTCTTCATCAACACCACACGGC 154
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 61 AATGATGAGCATAATGTCAACATTACAATCACTGACGATTCTTCATCAACACCACGTGAA 120
Query 155 GTTAATATTGTTGAACGGTGTATT-C--CATGCACAAGAGAAATGGAGTGGTTTTGTTTC 211
| || |||||||||||||||| | | |||||| ||||||||||||||| |||||||
Sbjct 121 GCCAAGGCTGTTGAACGGTGTATTCCTTCTTGCACAGGAGAAATGGAGTGGTGTTGTTTC 180
Query 212 ATCGAGTTTGTTTTGAATATTGTCCAAATTGTTGCAGCTTTTGTAGTTGTGACTCGGGCA 271
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 ATCGAGTTTGTTCTCAATATTGTCCAAATTGTTGCAGCTTTTGTAGTTGTGAATCGGGCA 240
Query 272 AAAGATGAACATCCAGGAACATCATTTCTTGTATGGATCATTGGTTACACTTGTGGATGT 331
|||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 241 AAAGATGAACATCCAGAAACATCATTTCTTATATGGATCATCGGTTACACTTGTGGCTGT 300
Query 332 GTTGCCATTCTTCTTATTCAGTTTATTAACCGTATTTCGTCAAGAAGCTACGAGGAGATC 391
||||| |||||||||||||| ||||| ||| || |||| |||||||||||||||| ||||
Sbjct 301 GTTGCTATTCTTCTTATTCAATTTATAAACTGTGTTTCCTCAAGAAGCTACGAGGTGATC 360
Query 392 ATGGACGTTT-TGAAGAATATATGTGAATATTTCTTCGTTGGTTGGGTTGTGTTGTTTCT 450
|| ||| ||| ||| | | |||| |||||||||||| || ||||||||| || |||||||
Sbjct 361 ATAGAC-TTTGTGACGGAGATATTTGAATATTTCTTTGTGGGTTGGGTTTTGCTGTTTCT 419
Query 451 TTGGATGTATCATAGTAGTTCTTCATCTCTATATGATAATACTCAATATTTCTGGTTATG 510
|||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 420 TTGGATTTATCATAGCAGTTCATCATCTCTATATGATAATACTCAACATTTCTGGTTATG 479
Query 511 TATGGCTTTTCTTGCTTTCACTTGCATTCGATATGTACCGGCTCGTTTAATATGTTCAGC 570
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 480 TATGGCTTTTCTTGCTTTCACTTGCATTCGATATATACCGGCTCATTTAATATTTTCAGC 539
Query 571 AATATGCTTTATTTTCGTTGTGATAATATGGTTTTGCGCCGATGTGTTAGGCACAACCCC 630
|||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 540 GATATGCTTCCTTTTCGTTGTGATAATATGGATTTGCGCCGCTGTGTTAGGCACCACCCC 599
Query 631 GAGTATGTTTGCTAATGCTGTATTCCTTATAGTTTTCATTGGAATTCTTAAAGTCA-TTG 689
| || ||||| | ||| || |||||||||| || ||||||||||||||||||| | ||
Sbjct 600 TAATACGTTTGTTTATGTTGCATTCCTTATAATTGTCATTGGAATTCTTAAAGT-AGTTC 658
Query 690 AGGAGGTT 697
| ||||||
Sbjct 659 AAGAGGTT 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5