BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44010.1 Length=778 Score E Sequences producing significant alignments: (Bits) Value Ahg314116 jgi|Araly1|314116|fgenesh1_pm.C_scaffold_1002896 811 0.0 > Ahg314116 jgi|Araly1|314116|fgenesh1_pm.C_scaffold_1002896 Length=684 Score = 811 bits (439), Expect = 0.0 Identities = 593/668 (89%), Gaps = 7/668 (1%) Strand=Plus/Plus Query 35 ATGGAGGGGCCTTTGCTAACCAAGAACAAGCACATCAAAATCCATGGCGATTCTTCATCA 94 ||||| || |||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 1 ATGGAAGGCCCTTTGCTAACCAAGAGTGAGCACATCAAAATCGATGGTGATTCTTCATCG 60 Query 95 AATGATGAGCATAATGTCAACATTACAATCACTAACGATTCTTCATCAACACCACACGGC 154 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 61 AATGATGAGCATAATGTCAACATTACAATCACTGACGATTCTTCATCAACACCACGTGAA 120 Query 155 GTTAATATTGTTGAACGGTGTATT-C--CATGCACAAGAGAAATGGAGTGGTTTTGTTTC 211 | || |||||||||||||||| | | |||||| ||||||||||||||| ||||||| Sbjct 121 GCCAAGGCTGTTGAACGGTGTATTCCTTCTTGCACAGGAGAAATGGAGTGGTGTTGTTTC 180 Query 212 ATCGAGTTTGTTTTGAATATTGTCCAAATTGTTGCAGCTTTTGTAGTTGTGACTCGGGCA 271 |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 ATCGAGTTTGTTCTCAATATTGTCCAAATTGTTGCAGCTTTTGTAGTTGTGAATCGGGCA 240 Query 272 AAAGATGAACATCCAGGAACATCATTTCTTGTATGGATCATTGGTTACACTTGTGGATGT 331 |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||| Sbjct 241 AAAGATGAACATCCAGAAACATCATTTCTTATATGGATCATCGGTTACACTTGTGGCTGT 300 Query 332 GTTGCCATTCTTCTTATTCAGTTTATTAACCGTATTTCGTCAAGAAGCTACGAGGAGATC 391 ||||| |||||||||||||| ||||| ||| || |||| |||||||||||||||| |||| Sbjct 301 GTTGCTATTCTTCTTATTCAATTTATAAACTGTGTTTCCTCAAGAAGCTACGAGGTGATC 360 Query 392 ATGGACGTTT-TGAAGAATATATGTGAATATTTCTTCGTTGGTTGGGTTGTGTTGTTTCT 450 || ||| ||| ||| | | |||| |||||||||||| || ||||||||| || ||||||| Sbjct 361 ATAGAC-TTTGTGACGGAGATATTTGAATATTTCTTTGTGGGTTGGGTTTTGCTGTTTCT 419 Query 451 TTGGATGTATCATAGTAGTTCTTCATCTCTATATGATAATACTCAATATTTCTGGTTATG 510 |||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 420 TTGGATTTATCATAGCAGTTCATCATCTCTATATGATAATACTCAACATTTCTGGTTATG 479 Query 511 TATGGCTTTTCTTGCTTTCACTTGCATTCGATATGTACCGGCTCGTTTAATATGTTCAGC 570 |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 480 TATGGCTTTTCTTGCTTTCACTTGCATTCGATATATACCGGCTCATTTAATATTTTCAGC 539 Query 571 AATATGCTTTATTTTCGTTGTGATAATATGGTTTTGCGCCGATGTGTTAGGCACAACCCC 630 |||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||| Sbjct 540 GATATGCTTCCTTTTCGTTGTGATAATATGGATTTGCGCCGCTGTGTTAGGCACCACCCC 599 Query 631 GAGTATGTTTGCTAATGCTGTATTCCTTATAGTTTTCATTGGAATTCTTAAAGTCA-TTG 689 | || ||||| | ||| || |||||||||| || ||||||||||||||||||| | || Sbjct 600 TAATACGTTTGTTTATGTTGCATTCCTTATAATTGTCATTGGAATTCTTAAAGT-AGTTC 658 Query 690 AGGAGGTT 697 | |||||| Sbjct 659 AAGAGGTT 666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28706556501 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5