BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44080.1 Length=1044 Score E Sequences producing significant alignments: (Bits) Value Ahg473796 jgi|Araly1|473796|fgenesh2_kg.1__3750__AT1G44080.1 1530 0.0 Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 276 3e-73 > Ahg473796 jgi|Araly1|473796|fgenesh2_kg.1__3750__AT1G44080.1 Length=1044 Score = 1530 bits (828), Expect = 0.0 Identities = 973/1045 (93%), Gaps = 2/1045 (0%) Strand=Plus/Plus Query 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCCAATAAT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCTAATAAT 60 Query 61 TTATCTTCCAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTATCTTCAAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120 Query 121 GTTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180 Query 181 AAAAAGACTGTTGTCTCTCCCTCCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCGT 240 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 181 ACAAAGACTGTTGTCTCTCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCT 240 Query 241 AACAAAGGATGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAAAATAATCTCTTG 300 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 AACAAAGGGTGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTG 300 Query 301 TCTCCTCTTTCTGGCAAAACCATAACCCCTTCCGACAAAACCCTAGACCTTTTGAAGGTC 360 | |||||| |||||||| |||| ||||||||||||||||||||||||||| ||||| || Sbjct 301 TGTCCTCTGTCTGGCAAGCCCATCACCCCTTCCGACAAAACCCTAGACCTTATGAAGCTC 360 Query 361 GAGTGTTTCAGAGATTCGTCAATCTTACAACTATTC-GCGGATTCGGATAGAGTTGTTTT 419 | ||||||| || ||||||||||||||||||| ||| ||| |||||| |||||||||||| Sbjct 361 G-GTGTTTCGGAAATTCGTCAATCTTACAACTCTTCTGCGAATTCGGCTAGAGTTGTTTT 419 Query 420 CCTAGACAATGTCTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAGAGTGG 479 |||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || || Sbjct 420 CCTAAACAATATGTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAAAGCGG 479 Query 480 AGAAGAAACTAGACATTGGACAAGAATCAACAATGAAGAAGCTAAAGGTTTTTTGGATAT 539 |||||||| || || |||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 480 AGAAGAAAGTATACGTTGGACAAGAATAAACAATGAAGAAGCTGAAGGTTTTTTGGATAT 539 Query 540 TATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAGCAATTTGGTGGATTAG 599 |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| Sbjct 540 TATACTTCACAAAGGAAAGGTCTATGCATTCGACTTAACCGGAGCAATTTGGTGGATTAG 599 Query 600 TTTATCTGAACTCAGCATATATCAATACGGACCTTCAACTCCAGTGGACTTCTACGAAAT 659 |||||||||||||||||||||||||| |||||||||||||||| | |||| |||||| || Sbjct 600 TTTATCTGAACTCAGCATATATCAATTCGGACCTTCAACTCCATTAGACTACTACGACAT 659 Query 660 TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGAGAACTATGCGTTGTTCATCG 719 |||||||||||||||||||||| |||| |||||||||||||| || |||||| ||||||| Sbjct 660 TGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGGAGATCTCTGCGTTATTCATCG 719 Query 720 ATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTACCGAGAGAACCGTTTGTTTTAAGGT 779 |||| |||||||||| ||||||| |||||||||| |||||||||||| |||||||||| Sbjct 720 TTTCTGTAAGAAATTTCGCGTAAATCGAGTTCTTAGAGAGAGAACCGTTGGTTTTAAGGT 779 Query 780 TTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 780 TTACAAGATGGACAAGAATTTGGTAAAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839 Query 840 ACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899 |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 840 ACTCATTGTGGCTACGGATAGTTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899 Query 900 GGAGAATGCTATTTACTTCAACGACCGGGAAGATGTTAGTGTGTTTAAGCTTGATGATTG 959 |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | Sbjct 900 GGAGAATGCTATCTACTTCAATGACGGGGAAGATGTTAGTGTGTTTAAGCTTGATGATGG 959 Query 960 TAGCATTATTACCAAGCAAATTAATTCTTCTTCTTCATCTTCTCATCAAAGTTGTTTCCA 1019 |||||| |||| |||||| ||| ||||||||||||||||||||||| | ||||||||||| Sbjct 960 TAGCATCATTAACAAGCAGATTGATTCTTCTTCTTCATCTTCTCATGAGAGTTGTTTCCA 1019 Query 1020 GATGTTTTCTACTTCTTTTTTCTGA 1044 |||||| ||| || ||||| ||||| Sbjct 1020 GATGTTCTCTGCTCCTTTTCTCTGA 1044 > Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 Length=1021 Score = 276 bits (149), Expect = 3e-73 Identities = 320/400 (80%), Gaps = 22/400 (6%) Strand=Plus/Plus Query 524 AAGGTTTTTTGGATATTATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAG 583 ||| ||| | ||| ||||||||||||| ||| |||||||| | ||||||| ||||| Sbjct 524 AAGATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAG 583 Query 584 CAATTTGGTGGATTAGTTTATCTGAACTCA--GCATATATCAATACG-GACCTTCAACTC 640 ||| |||||||||||||||||| | || | || | | |||| | | ||||||||||| Sbjct 584 CAACTTGGTGGATTAGTTTATCACAGCTTAGTGC-TGT-TCAACA-GACACCTTCAACTC 640 Query 641 CAGTGGACTTCTACGAAAT-TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGA 699 || |||||| ||| || | ||||| |||| |||| | ||| |||||||| ||||||||| Sbjct 641 CATTGGACTACTA-TAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGA 699 Query 700 GAACTATGCGTTGTTCATCGATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTA-CCGA 758 || |||||| ||||||||| | || | || || | |||| | | || || | | Sbjct 700 GATCTATGCATTGTTCATC-A-ACT-T-AG---CGTTAC-TAAA-C-A-TT-ATATCAG- 746 Query 759 GAGAACCGTTTGTTTTAAGGTTTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGT 818 ||| |||||| ||||||||||||||||||||||| || |||||| | ||||||||||||| Sbjct 747 GAGGACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGT 806 Query 819 CAGTTCCTTGGGAGACAAGGCACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGC 878 ||||||||||||||||||||||||||||| || ||||| ||||||| |||| |||| Sbjct 807 TAGTTCCTTGGGAGACAAGGCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGC 866 Query 879 CTCCGAGTACTATGGATGTTTGGAGAATGCTATTTACTTC 918 ||| |||||| ||||||||||| |||||||||| |||||| Sbjct 867 CTCTGAGTACCATGGATGTTTGAAGAATGCTATCTACTTC 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38847252423 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5