BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44080.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473796 jgi|Araly1|473796|fgenesh2_kg.1__3750__AT1G44080.1 1530 0.0
Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 276 3e-73
> Ahg473796 jgi|Araly1|473796|fgenesh2_kg.1__3750__AT1G44080.1
Length=1044
Score = 1530 bits (828), Expect = 0.0
Identities = 973/1045 (93%), Gaps = 2/1045 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCCAATAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCTAATAAT 60
Query 61 TTATCTTCCAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATCTTCAAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120
Query 121 GTTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180
Query 181 AAAAAGACTGTTGTCTCTCCCTCCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCGT 240
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 181 ACAAAGACTGTTGTCTCTCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCT 240
Query 241 AACAAAGGATGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAAAATAATCTCTTG 300
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AACAAAGGGTGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTG 300
Query 301 TCTCCTCTTTCTGGCAAAACCATAACCCCTTCCGACAAAACCCTAGACCTTTTGAAGGTC 360
| |||||| |||||||| |||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 301 TGTCCTCTGTCTGGCAAGCCCATCACCCCTTCCGACAAAACCCTAGACCTTATGAAGCTC 360
Query 361 GAGTGTTTCAGAGATTCGTCAATCTTACAACTATTC-GCGGATTCGGATAGAGTTGTTTT 419
| ||||||| || ||||||||||||||||||| ||| ||| |||||| ||||||||||||
Sbjct 361 G-GTGTTTCGGAAATTCGTCAATCTTACAACTCTTCTGCGAATTCGGCTAGAGTTGTTTT 419
Query 420 CCTAGACAATGTCTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAGAGTGG 479
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 420 CCTAAACAATATGTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAAAGCGG 479
Query 480 AGAAGAAACTAGACATTGGACAAGAATCAACAATGAAGAAGCTAAAGGTTTTTTGGATAT 539
|||||||| || || |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 480 AGAAGAAAGTATACGTTGGACAAGAATAAACAATGAAGAAGCTGAAGGTTTTTTGGATAT 539
Query 540 TATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAGCAATTTGGTGGATTAG 599
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 540 TATACTTCACAAAGGAAAGGTCTATGCATTCGACTTAACCGGAGCAATTTGGTGGATTAG 599
Query 600 TTTATCTGAACTCAGCATATATCAATACGGACCTTCAACTCCAGTGGACTTCTACGAAAT 659
|||||||||||||||||||||||||| |||||||||||||||| | |||| |||||| ||
Sbjct 600 TTTATCTGAACTCAGCATATATCAATTCGGACCTTCAACTCCATTAGACTACTACGACAT 659
Query 660 TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGAGAACTATGCGTTGTTCATCG 719
|||||||||||||||||||||| |||| |||||||||||||| || |||||| |||||||
Sbjct 660 TGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGGAGATCTCTGCGTTATTCATCG 719
Query 720 ATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTACCGAGAGAACCGTTTGTTTTAAGGT 779
|||| |||||||||| ||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 720 TTTCTGTAAGAAATTTCGCGTAAATCGAGTTCTTAGAGAGAGAACCGTTGGTTTTAAGGT 779
Query 780 TTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 TTACAAGATGGACAAGAATTTGGTAAAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839
Query 840 ACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTCATTGTGGCTACGGATAGTTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899
Query 900 GGAGAATGCTATTTACTTCAACGACCGGGAAGATGTTAGTGTGTTTAAGCTTGATGATTG 959
|||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 900 GGAGAATGCTATCTACTTCAATGACGGGGAAGATGTTAGTGTGTTTAAGCTTGATGATGG 959
Query 960 TAGCATTATTACCAAGCAAATTAATTCTTCTTCTTCATCTTCTCATCAAAGTTGTTTCCA 1019
|||||| |||| |||||| ||| ||||||||||||||||||||||| | |||||||||||
Sbjct 960 TAGCATCATTAACAAGCAGATTGATTCTTCTTCTTCATCTTCTCATGAGAGTTGTTTCCA 1019
Query 1020 GATGTTTTCTACTTCTTTTTTCTGA 1044
|||||| ||| || ||||| |||||
Sbjct 1020 GATGTTCTCTGCTCCTTTTCTCTGA 1044
> Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1
Length=1021
Score = 276 bits (149), Expect = 3e-73
Identities = 320/400 (80%), Gaps = 22/400 (6%)
Strand=Plus/Plus
Query 524 AAGGTTTTTTGGATATTATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAG 583
||| ||| | ||| ||||||||||||| ||| |||||||| | ||||||| |||||
Sbjct 524 AAGATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAG 583
Query 584 CAATTTGGTGGATTAGTTTATCTGAACTCA--GCATATATCAATACG-GACCTTCAACTC 640
||| |||||||||||||||||| | || | || | | |||| | | |||||||||||
Sbjct 584 CAACTTGGTGGATTAGTTTATCACAGCTTAGTGC-TGT-TCAACA-GACACCTTCAACTC 640
Query 641 CAGTGGACTTCTACGAAAT-TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGA 699
|| |||||| ||| || | ||||| |||| |||| | ||| |||||||| |||||||||
Sbjct 641 CATTGGACTACTA-TAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGA 699
Query 700 GAACTATGCGTTGTTCATCGATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTA-CCGA 758
|| |||||| ||||||||| | || | || || | |||| | | || || | |
Sbjct 700 GATCTATGCATTGTTCATC-A-ACT-T-AG---CGTTAC-TAAA-C-A-TT-ATATCAG- 746
Query 759 GAGAACCGTTTGTTTTAAGGTTTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGT 818
||| |||||| ||||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct 747 GAGGACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGT 806
Query 819 CAGTTCCTTGGGAGACAAGGCACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGC 878
||||||||||||||||||||||||||||| || ||||| ||||||| |||| ||||
Sbjct 807 TAGTTCCTTGGGAGACAAGGCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGC 866
Query 879 CTCCGAGTACTATGGATGTTTGGAGAATGCTATTTACTTC 918
||| |||||| ||||||||||| |||||||||| ||||||
Sbjct 867 CTCTGAGTACCATGGATGTTTGAAGAATGCTATCTACTTC 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5