BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44090.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913614 jgi|Araly1|913614|Al_scaffold_0001_3868 1801 0.0
> Ahg913614 jgi|Araly1|913614|Al_scaffold_0001_3868
Length=1170
Score = 1801 bits (975), Expect = 0.0
Identities = 1079/1131 (95%), Gaps = 0/1131 (0%)
Strand=Plus/Plus
Query 28 GTCTGCCCCTATTTAACCCCCTTCAAAGTTAAAAGACCCAAGTCAAGAGAAATGAATTCC 87
|||||||||||||||| ||||||||| | ||| ||||||| ||||||||||||||||||
Sbjct 40 GTCTGCCCCTATTTAAATCCCTTCAAACTCAAAGGACCCAATTCAAGAGAAATGAATTCC 99
Query 88 TCCGACGTCAACTTCTCCCTACTCCAGAGCCAACCAAATGTTCCGGCTGAATTCTTCTGG 147
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 100 TCCGACGTCAACTTCTCCCTACTCCAAAACCAACCAAATGTTCCAGCTGAATTCTTCTGG 159
Query 148 CCGGAGAAAGACGTTGCCCCTTCAGAAGGCGACCTCGATCTCCCAATCATCGACTTGAGT 207
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 160 CCGGAAAAAGACGTTGCCCCTTCAGAAGGCGACCTCGACCTCCCAATCATCGACTTGAGT 219
Query 208 GGGTTCTTGAATGGCAATGAGGCCGAGACGCAACTTGCAGCTAAGGCAGTGAAAAAAGCG 267
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 220 GGGTTCTTGAATGGCAATGAGGCCGAGACGCAACTTGCAGCTAAGGCAGTGAGAGAAGCG 279
Query 268 TGCATGGCTCACGGTACTTTTCTAGTGGTCAATCATGGCTTCAAGTCGGGCTTGGCTGAA 327
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TGCATGGCTCATGGTACGTTTCTAGTGGTCAATCATGGCTTCAAGTCGGGCTTGGCTGAA 339
Query 328 AAGGCGCTTGAGATATCGAGTTTGTTCTTTGGGCTATCCAAGGATGAGAAGCTAAGGGCT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 340 AAGGCGCTTGAGATATCGAGTTTGTTCTTTGGGCTATCCAAGGATGAGAAGCTAAAGGCT 399
Query 388 TATAGGATCCCGGGGAATATCTCTGGCTATACCGCAGGTCATAGCCAAAGATTTTCCTCC 447
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 400 TATAGGATCCCGGGGAATATCTCTGGCTATACCGCGGGTCATAGCCAGAGATTCTCCTCC 459
Query 448 AATCTTCCGTGGAATGAGACTTTGACTTTGGCCTTCAAAAAGGGGCCACCCCATGTTGTT 507
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 460 AATCTTCCATGGAATGAGACTTTGACTTTGGCATTCAAAAAAGGGCCACCCCATGTTGTT 519
Query 508 GAAGACTTTCTAACCTCAAGGCTAGGCAACCATCGTCAAGAGATCGGTCAAGTGTTTCAA 567
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 520 GAGGAATTCCTAACCTCAAGGCTAGGCAACCATCGTCAAGAGATCGGTCAAGTGTTCCAA 579
Query 568 GAATTTTGTGATGCAATGAATGGACTGGTTATGGATTTGATGGAGCTATTGGGTATAAGT 627
|||||||||||||||||||| ||| || |||||||||||||| ||||| | || ||||||
Sbjct 580 GAATTTTGTGATGCAATGAACGGATTGATTATGGATTTGATGAAGCTACTAGGAATAAGT 639
Query 628 ATGGGTTTAAAAGACAGGACATACTACCGGAGATTCTTCGAAGATGGAAGTGGCATCTTC 687
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 640 ATGGGTTTAAAAGACAGGAAATATTACCGGAGATTCTTCGAAGATGGAAGTGGCATCTTC 699
Query 688 AGATGCAACTATTATCCGCCGTGCAAGCAGCCAGAGAAAGCCCTTGGTGTTGGCCCCCAT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 700 AGATGCAACTATTATCCGCCGTGCAAGCAGCCAGAGAAAGCCCTTGGTGTTGGTCCCCAT 759
Query 748 AATGACCCAACGGCTATAACCGTTTTGCTTCAAGACGATGTTGTGGGCTTAGAGGTCTTT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AATGACCCAACGGCTATAACCGTTTTGCTTCAAGACGATGTTGTGGGCTTAGAGGTCTTT 819
Query 808 GCCGCAGGTAGTTGGCAGACCGTTCGCCCTCGTCCTGGTGCTCTTGTCGTCAACGTTGGA 867
|||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 820 GCCGGAGGTAGGTGGCAGACCGTGCGGCCTCGTCCTGGTGCTCTTGTCGTCAACGTTGGA 879
Query 868 GACACCTTCATGGCATTGTCAAATGGAAACTACAGGAGTTGTTACCACAGGGCAGTGGTA 927
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 880 GACACCTTCATGGCATTGTCAAATGGAAACTACAAGAGTTGTTACCATAGGGCAGTGGTA 939
Query 928 AACAAGGAGAAAGTGAGAAGGTCATTAGTATTCTTCTCTTGTCCTAGAGAAGATAAAATC 987
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| || | |
Sbjct 940 AACAAGGAGAAAGTGAGAAGGTCACTAGTGTTCTTCTCTTGTCCTAGAGAAGACAAGACC 999
Query 988 ATCGTACCTCCTCCTGAACTTGTGGAAGGTGAAGAAGCTTCTAGAAAGTACCCTGACTTT 1047
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1000 ATCGTACCTCCTCCTGAACTTGTTGAAGGCAAAGAAGCTTCTAGACAGTACCCTGACTTT 1059
Query 1048 ACTTGGGCTCAGCTTCAGAAATTTACCCAGTCCGGCTATCGAGTCGATAACACCACTCTC 1107
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1060 ACTTGGGCTCAGCTTCAGAAATTTACCCAGTCTGGCTATCGAGTCGATAACACCACTCTC 1119
Query 1108 CATAACTTCTCTTCGTGGCTCGTCTCTAACTCCGACAAGAAATCAACTTGA 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CATAACTTCTCTTCGTGGCTCGTCTCTAACTCCGACAAGAAATCAACTTGA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5