BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44110.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473799 jgi|Araly1|473799|fgenesh2_kg.1__3753__AT1G44110.1 2148 0.0
> Ahg473799 jgi|Araly1|473799|fgenesh2_kg.1__3753__AT1G44110.1
Length=1570
Score = 2148 bits (1163), Expect = 0.0
Identities = 1451/1585 (92%), Gaps = 39/1585 (2%)
Strand=Plus/Plus
Query 1 CATTAAAACTCTGTTTCCTTTTTCAGAGATTCTCAGAGAAGATTCATTTTACCCTAAGaa 60
||||||||||| ||||||||||||||||||||||| || || |||||||||| ||
Sbjct 1 CATTAAAACTCAGTTTCCTTTTTCAGAGATTCTCACAG-AG----ATTTTACCCT---AA 52
Query 61 aaaaaaTGTCGAACATTCTTCAGAATCGGCGATCTTCGTTTTCCTCTTCGACGAAATCTT 120
|||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 53 AAAAGATGTCGAACATTCATCAGAATCGGCGATCTTCGTTTTCCTCGTCGACGAAATCCT 112
Query 121 CATTAGCGAAGCGTCAAGCACCATCTTCATCGGAGAATTCTGTTAAACTTATGCCGGCGA 180
|| |||| |||||||||||||||||||| ||||| ||||| || |||| |||| ||| ||
Sbjct 113 CACTAGCAAAGCGTCAAGCACCATCTTCGTCGGAAAATTCAGTGAAACCTATGGCGGTGA 172
Query 181 TGACGAAGAAACGAGCACCGTTAAGTAACATTACCAATC-AAAAAATCGCCTCACGATTA 239
||||||| |||||||||||||||||||| || || |||| ||||||| | ||||||||||
Sbjct 173 TGACGAAAAAACGAGCACCGTTAAGTAATATCACTAATCAAAAAAAT-GGCTCACGATTA 231
Query 240 -CAAA---AT--TCTGATTCGGTACATTGTTCAAACAAGTCAGCGAAATTGAAGATAGCA 293
|||| || | |||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 232 CCAAATTCATCATTTGATTCGGTACATTGTTCTAACAAGTCTGCGAAATTGAAGTTAGCA 291
Query 294 -C--CA--A-GTGTTTGCGTTAATGCCAGTTTCTCTAGC-A------A--TCTGCAACAA 338
| || | ||||||||| |||||| ||||||| ||| | | ||||||||||
Sbjct 292 CCAACACCACCTGTTTGCGTAAATGCCGGTTTCTCGAGCAATGTTTTACCTCTGCAACAA 351
Query 339 AGCATAGTTCCTCACAAAGTTGCTTCTTCACCTAGCAAATCTGATGATGGCTCAGTATCA 398
|| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 352 AGTGTAGTTCCTCACAAAGTTGCTTCCTCACCTAGCAAATCTGATGATGGATCAGTATCA 411
Query 399 ATGGACGAGACTAGGTCTTCAAGTGATTCCTACAAGAGTCCTCAAGTTGAGTATATCGAA 458
||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 412 ATGGACGAGACAATGTCTTCAAGTGATTCTTACAAGAGTCCTCAAGTTGAGTATATCGAT 471
Query 459 AACGACGACGTTTCGGCTGTTGTTTCGATTGAGAGGAAAGCTTTGAGTAATCTGTTCATA 518
|| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 472 AATGACGAAGTTTCCGCTGTTGTTTCGATTGAAAGGAAAGCATTGAGTAATCTGTACATA 531
Query 519 ACGCCGAATTCAGAAACAATTGATAATTATTGTAGTAGAGATGTGTTATCTGATATGAAG 578
||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 532 ACGCCGACTTCAGAAACAATTGGTAATTATTGTAGTAGAGATGTGCTGTCTGATATGAAG 591
Query 579 AAAATGGATAAGAATCAGATTGTTAACATTGATAGTAACAATGGTGATCCTCAGCTTTGT 638
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 592 AAAATGGATAAGAATCAGATTGTTAACATTGATAGTAACAATGCTGATCCTCAGCTTTGT 651
Query 639 GCTACGTTTGCTTGTGACATTTATAAGCATCTTCGTGCTTCTGAGGCTAAGAAGCGACCT 698
||||| |||||||||||||| |||||||||||| |||| || |||||||||||||| |||
Sbjct 652 GCTACATTTGCTTGTGACATCTATAAGCATCTTTGTGCCTCCGAGGCTAAGAAGCGGCCT 711
Query 699 GATGTTGATTACATGGAGAGAGTTCAGAAAGATGTGAATTCGAGTATGCGTGGAAT-CTT 757
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 712 GCGGTTGATTATATGGAGAGAGTTCAGAAAGACGTGAATTCGAGTATGCGTGGAATCCTT 771
Query 758 AGTTGATTGGCTTATTGAGGTGTCTGAAGAGTATAGGCTTGTACCGGAGACGTTGTATTT 817
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 772 -GTTGATTGGCTTATTGAGGTGTCAGAAGAGTATAGGCTTGTACCTGAGACGTTGTATTT 830
Query 818 GACTGTGAACTATATAGATAGGTATTTATCTGGGAATGTGATTAGTAGACAGAAACTTCA 877
||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 831 GACAGTGAACTATATAGATAGGTATCTATCTGGGAATGTGATTAGTAGGCAGAAACTTCA 890
Query 878 GTTGCTTGGTGTGGCTTGTATGATGATAGCAGCGAAATATGAAGAGATATGTGCTCCACA 937
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 891 GTTGCTTGGGGTGGCTTGTATGATGATAGCAGCAAAATATGAAGAGATATGTGCTCCACA 950
Query 938 AGTTGAGGAGTTTTGTTACATTACTGATAATACATATCTCAAAGATGAAGTTCTTGATAT 997
|||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 951 AGTTGAGGAGTTCTGCTACATCACTGATAATACGTATCTCAAAGATGAGGTTCTTGATAT 1010
Query 998 GGAATCTGATGTTCTGAATTACTTGAAGTTTGAAATGACTGCACCAACTACGAAATGTTT 1057
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||
Sbjct 1011 GGAATCTGATGTTCTGAATTACTTGAAGTTTGAAATGACAGCACCGACAACGAAATGCTT 1070
Query 1058 TCTAAGACGCTTTGTTCGAGCTGCTCATGGTGTTCATGAAGCTCCATTGATGCAGCTAGA 1117
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 1071 TCTAAGACGCTTTGTTCGAGCTGCCCATGGGGTTCATGAGGCTCCATTGATGCAACTAGA 1130
Query 1118 ATGTATGGCTAACTACATTGCGGAATTATCGCTACTAGAGTACACTATGCTCTCTCATTC 1177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1131 ATGTATGGCTAACTACATTGCGGAATTATCGCTTCTAGAGTACACTATGCTCTCTCATTC 1190
Query 1178 TCCTTCACTAGTAGCTGCTTCCGCCATTTTCTTGGCTAAGTACATTCTAGACCCAACAAG 1237
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ACCTTCACTAGTGGCTGCTTCCGCCATTTTCTTGGCTAAGTACATTCTAGACCCAACAAG 1250
Query 1238 ACGACCATGGAACTCGACGTTGCAACACTATACGCAATATAAAGCGATGGAGTTGAGAGG 1297
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 AAGACCATGGAACTCGACTTTGCAACACTATACGCAATATAAAGCGATGGAGTTGAGAGG 1310
Query 1298 ATGTGTGAAGGATCTTCAACGATTGTGTAGTACTGCTCACGGCTCTACACTACCTGCTGT 1357
||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 1311 ATGTGTGAAGGATCTTCAAAGATTGTGTAGTACCGCTCACGGCTCTACTCTACCTGCTGT 1370
Query 1358 TAGAGAGAAGTATAGTCAACACAAATACAAGTTTGTGGCGAAGAAGTTTTGTCCATCCGT 1417
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1371 GAGAGAGAAATACAGTCAACACAAATACAAGTTTGTGGCAAAGAAGTTTTGTCCATCAAT 1430
Query 1418 AATCCCACAAGAGTTCTTCAACAACAGCTAAAAATCCTTTAATTTAACTTTGTTCCAATG 1477
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1431 AATCCCACAAGAGTTCTTCAACAACAGCTAAA--TCTTTTAATTTAACTTAGTTCCAATG 1488
Query 1478 TTGTGTTGGATTTAATTGTTTGATTGTACATGATTTTGCTGTTGTTGGTCTATTTATAAA 1537
||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 ATGT-T-GGATTGA-TTGTTTGATTGTACATGATTTTGCTGTTGTTGGTCTATTTATAAA 1545
Query 1538 A-TTAGCTATCTACGATCTCACTTT 1561
| |||||||||||||||||||||||
Sbjct 1546 AATTAGCTATCTACGATCTCACTTT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5