BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44130.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475850 jgi|Araly1|475850|fgenesh2_kg.2__980__AT1G44130.1 1642 0.0
Ahg314121 jgi|Araly1|314121|fgenesh1_pm.C_scaffold_1002901 887 0.0
> Ahg475850 jgi|Araly1|475850|fgenesh2_kg.2__980__AT1G44130.1
Length=1233
Score = 1642 bits (889), Expect = 0.0
Identities = 1119/1229 (91%), Gaps = 19/1229 (2%)
Strand=Plus/Plus
Query 7 TCAAGATTTTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTCCTCTATCAAAATCTTCA 66
|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 7 TCAAGATTCTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTTCTCAATCAAAATCTTCC 66
Query 67 ATCTTCAAAACCTT---C----A------T--CAAATCCT-CTCCTTCCTCAGTCGTCTT 110
|||||||||||||| | | | ||||| || ||| ||||||||||||| |
Sbjct 67 ATCTTCAAAACCTTCCCCGGTAATCTCTCTCCCAAAT-CTCCTCTTTCCTCAGTCGTCCT 125
Query 111 CCCTCTCTCCGGCAACGTCTTCCCTCTCGGATACTACTCAGTCTTAATGCAAATAGGAAG 170
|| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 126 CCTTCTCTCCGGCAACGTCTTCCCTCTCGGATACTACTCTGTCTTACTTCAAATAGGAAA 185
Query 171 CCCTCCAAAGGCATTTCAATTTGATATTGATACCGGAAGCGATCTCACTTGGGTTCAATG 230
|||||||||||||||| | |||||||||||||| || || ||| ||||||||||||||||
Sbjct 186 CCCTCCAAAGGCATTTGAGTTTGATATTGATACTGGTAGTGATATCACTTGGGTTCAATG 245
Query 231 TGATGCTCCTTGCAGTGGTTGCACTTTGCCTCCTAATCTTCAGTACAAGCCTAAAGGAAA 290
||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 246 CGATGCTCCTTGCACTGGTTGTAATTTGCCTCCTAAACTTCAGTACAAGCCTAAAGGAAA 305
Query 291 CATTATCCCGTGCTCAAACCCGATCTGTACAGCTCTTCACTGGCCTAACAAGCCTCATTG 350
|| | ||||||||||| ||||||| ||| ||| ||||||| |||||||| ||||| ||
Sbjct 306 CACTGTCCCGTGCTCAGACCCGATTTGTTTAGCACTTCACTTTCCTAACAATCCTCAATG 365
Query 351 CCCAAACCCGCAAGAACAATGTGACTATGAAGTTAAATATGCTGATCAAGGTTCATCAAT 410
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 366 TCCAAACCCGAAAGAACAATGTGACTATGAAGTTAATTATGCTGATCAAGGTTCATCAAT 425
Query 411 GGGTGCACTTGTTACCGATCAGTTTCCTTTAAAACTCGTAAATGGCTCGTTCATGCAACC 470
|||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 426 GGGTGCACTTGTTATTGATCAGTTTCCTTTTAAACTCCTAAATGGCTCGGCCATGCAACC 485
Query 471 TCCTGTAGCATTCGGGTGTGGTTATGATCAGAGTTACCCTAGTGCACATCCTCCGCCCGC 530
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TCGTTTAGCATTCGGGTGTGGTTATGATCAGAGTTACCCTAGTGCACATCCTCCGCCCGC 545
Query 531 GACTGCTGGAGTTTTGGGACTTGGAAGAGGGAAAATCGGTCTCTTGACACAGCTTGTCTC 590
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 546 GACTGCTGGAGTTTTGGGGCTTGGGAGAGGGAAAATTGGTCTCTTGACACAGCTTGTGTC 605
Query 591 CGCGGGACTAACAAGAAATGTGGTTGGACATTGCTTAAGTTCTAAAGGTGGAGGCTTTTT 650
||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||
Sbjct 606 CGCAGGACTAACGAGAAATGTTGTTGGACATTGCCTAAGTTCTAAAGGTGGAGGCTATTT 665
Query 651 GTTCTTTGGAGACAATCTTGTTCCTTCCATTGGTGTGGCATGGACACCATTATTATCACA 710
|||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 666 GTTCTTTGGAGACACTCTCATTCCTTCCCTTGGTGTGGCCTGGACACCATTATTATCACC 725
Query 711 AGACAACCACTACACGACCGGACCAGCCGATCTTCTCTTCAACGGAAAGCCAACAGGTTT 770
|||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 726 AGACAACCACTACACGACTGGACCAGTCGAGCTTCTTTTCAACGGAAAGCCAACAGGTTT 785
Query 771 AAAAGGACTTAAACTCATTTTTGACACCGGAAGCTCTTACACTTACTTCAACAGCAAGGC 830
| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 786 ACAAGGACTTAAACTCATCTTTGACACCGGAAGCTCATACACTTACTTCAACAGCAAGAT 845
Query 831 ATACCAAACAATAATTAACCTGATCGGAAATGATCTGAAAGTCTCACCGTTGAAGGTTGC 890
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATACCAAACAATAGTTAACCTGATCGGAAATGATCTGAAAGTCTCACCGTTGAAGGTTGC 905
Query 891 GAAAGAAGATAAGACCTTACCAATCTGCTGGAAAGGAGCTAAGCCCTTTAAATCTGTTCT 950
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 906 CAAAGAAGATAAGACCTTACCAATCTGCTGGAAAGGAGCTAAGCCCTTCAAATCTGTTCT 965
Query 951 TGAGGTCAAGAACTTTTTCAAGACCATAACAATCAACTTCACCAATGGGAGAAGAAACAC 1010
||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||
Sbjct 966 TGAGGTCAAGAACTTCTTCAAAACCATAACAATTAACTTTACCAATGCCAGAAGAAACAC 1025
Query 1011 TCAGCTCTATCTTGCACCCGAAT-TATATCTCATTGTCTCTAAAACTGGAAACGTATGCT 1069
||||||| | || ||||||||| | |||||||| ||||||||||||| || | ||||
Sbjct 1026 TCAGCTCCAGATTCCACCCGAATCT-TATCTCATCATCTCTAAAACTGGTAATGCCTGCT 1084
Query 1070 TGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACGTAATCGGAGATATCT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACGTAATCGGAGATATCT 1144
Query 1130 CTATGCAAGGGCTAATGATGATCTACGACAACGAGAAGCAACAACTCGGATGGGTTTCTT 1189
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1145 CTATGCAAGGGCTACTGATAATCTACGACAACGAGAAACAACAACTCGGATGGGTTTCTT 1204
Query 1190 CAGATTGCAATAAGCTTCCCAAAACATGA 1218
|| ||||||||||||||||||||||||||
Sbjct 1205 CAAATTGCAATAAGCTTCCCAAAACATGA 1233
> Ahg314121 jgi|Araly1|314121|fgenesh1_pm.C_scaffold_1002901
Length=1065
Score = 887 bits (480), Expect = 0.0
Identities = 646/724 (89%), Gaps = 19/724 (3%)
Strand=Plus/Plus
Query 7 TCAAGATTTTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTCCTCTATCAAAATCTTCA 66
|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 7 TCAAGATTCTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTTCTCAATCAAAATCTTCC 66
Query 67 ATCTTCAAAACCTTCATCA--AA------T-CC---TCT-C-C-TTCCTCAGTCGTCTTC 111
|||||||||||||| || || | || ||| | | ||||||||||||| ||
Sbjct 67 GTCTTCAAAACCTTCCCCAGTAATCTCTCTCCCAAATCTCCTCTTTCCTCAGTCGTCCTC 126
Query 112 CCTCTCTCCGGCAACGTCTTCCCTCTCGGATACTACTCAGTCTTAATGCAAATAGGAAGC 171
|||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
Sbjct 127 CCTCTCTCCGGCAACGTCTTCCCTCTCGGATACTACTCTGTCTTACTTCAAATAGGAACC 186
Query 172 CCTCCAAAGGCATTTCAATTTGATATTGATACCGGAAGCGATCTCACTTGGGTTCAATGT 231
||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||
Sbjct 187 CCTCCAAAGGCATTTGAATTTGATATTGATACTGGTAGTGATCTCACTTGGGTTCAATGC 246
Query 232 GATGCTCCTTGCAGTGGTTGCACTTTGCCTCCTA-ATCTTCAGTACAAGCCTAAAGGAAA 290
||||||||||||| |||||| ||||||||||||| | | |||||||||||||||||||||
Sbjct 247 GATGCTCCTTGCACTGGTTGTACTTTGCCTCCTATA-CGTCAGTACAAGCCTAAAGGAAA 305
Query 291 CATTATCCCGTGCTCAAACCCGATCTGTACAGCTCTTCACTGGCCTAACAAGCCTCATTG 350
|| | ||||||||| | ||||||| ||| ||| ||||||| |||||||||||||| ||
Sbjct 306 CACTGTCCCGTGCTTAGACCCGATTTGTTTAGCACTTCACTTTCCTAACAAGCCTCAATG 365
Query 351 CCCAAACCCGCAAGAACAATGTGACTATGAAGTTAAATATGCTGATCAAGGTTCATCAAT 410
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 366 TCCAAACCCGAAAGAACAATGTGACTATGAAGTTAATTATGCTGATCAAGGTTCATCAAT 425
Query 411 GGGTGCACTTGTTACCGATCAGTTTCCTTTAAAACTCGTAAATGGCTCGTTCATGCAACC 470
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 426 GGGTGCACTTGTTATTGATCAGTTTCCTTTAAAACTCCTAAATGGCTCGGCCATGCAACC 485
Query 471 TCCTGTAGCATTCGGGTGTGGTTATGATCAGAGTT-ACCCTAGTGCACATCCTCCGCCCG 529
|| | ||||||||||||||||||||||||||| || ||| || ||||||||||||||||
Sbjct 486 TCGTTTAGCATTCGGGTGTGGTTATGATCAGATTTTACC-TAAAGCACATCCTCCGCCCG 544
Query 530 CGACTGCTGGAGTTTTGGGACTTGGAAGAGGGAAAATCGGTCTCTTGACACAGCTTGTCT 589
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 545 CGACTGCTGGAGTTTTGGGGCTTGGGAGAGGGAAAATTGGTCTCTTGACACAGCTTGTAG 604
Query 590 CCGCGGGACTAACAAGAAATGTGGTTGGACATTGCTTAAGTTCTAAAGGTGGAGGCTTTT 649
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 605 CCGCGGGACTAACGAGAAATGTGGTTGGACATTGCCTAAGTTCTAAAGGTGGAGGCTATT 664
Query 650 TGTTCTTTGGAGACAATCTTGTTCCTTCCATTGGTGTGGCATGGACACCATTATTATCAC 709
||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||
Sbjct 665 TGTTCTTTGGAGACACTCTCATTCCTACCCTTGGTGTGGCCTGGACACCATTATTATCAC 724
Query 710 AAGA 713
|||
Sbjct 725 CAGA 728
Score = 385 bits (208), Expect = 5e-106
Identities = 259/284 (91%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 936 CTTTAAATCTGTTCTTGAGGTCAAGAACTTTTTCAAGACCATAACAATCAACTTCACCAA 995
||| ||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 783 CTTCAAATCTGTTCTTGAGTTTAAGAACTTCTTCAAGACCATAACAATTAACTTTACCAA 842
Query 996 TGGGAGAAGAAACACTCAGCTCTATCTTGCACCCGAAT-TATATCTCATTGTCTCTAAAA 1054
|| ||||||| |||||||||| | || ||||||||| | |||||||| |||||||||
Sbjct 843 TGCCAGAAGAATCACTCAGCTCCAGATTCCACCCGAATCT-TATCTCATCATCTCTAAAA 901
Query 1055 CTGGAAACGTATGCTTGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACG 1114
|||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTGGTAATGCCTGCTTGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACG 961
Query 1115 TAATCGGAGATATCTCTATGCAAGGGCTAATGATGATCTACGACAACGAGAAGCAACAAC 1174
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 962 TAATCGGAGATATCTCTATGCAAGGGCTAATGGTGATCTACGACAACGACAAACAACAAC 1021
Query 1175 TCGGATGGGTTTCTTCAGATTGCAATAAGCTTCCCAAAACATGA 1218
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1022 TCGGATGGGTTTCTTCAAATTGCAATAAGCTTCCCAAAACATGA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5