BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44160.1
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473802 jgi|Araly1|473802|fgenesh2_kg.1__3756__AT1G44160.1 1927 0.0
Ahg475851 jgi|Araly1|475851|fgenesh2_kg.2__981__AT1G44160.1 580 7e-165
Ahg473805 jgi|Araly1|473805|fgenesh2_kg.1__3759__AT1G44170.2 80.5 3e-14
> Ahg473802 jgi|Araly1|473802|fgenesh2_kg.1__3756__AT1G44160.1
Length=1392
Score = 1927 bits (1043), Expect = 0.0
Identities = 1306/1425 (92%), Gaps = 50/1425 (4%)
Strand=Plus/Plus
Query 25 TAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCTGTG-T----TCCTATCTGTTTCCG 79
|||||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1 TAGATGAGAGCGTTTCTTATCTTGATTCTTAGATCTGTGCTCCGATCCTATCTGTTTCCG 60
Query 80 TCAATGGCAAAAGATTTGGTCTAAAAAAGGAAGTTACGAAACaaaaaaacgtttcaattc 139
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 TCAATGGCAAAAGATTTGGTCTAAAAAAGGAAGTTACGAAAC-AGAAAACGTTTCAATTC 119
Query 140 tcattcatctctcaaaaacgtatctctctgactctctctttctctttctctatctcCGCC 199
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TCATTCATCTCCCAAAAACGTATCTCTCTCTCTCTCTCTTTCTCTTTCTCTATCTCCGCC 179
Query 200 GTGAATGGCAACACAAGGGATGGCTCAGCCTTCGGCGAAGAAAAGAAGCTTCCTCCTCCG 259
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GTGAATGGCAACACAAGGGATGGCTCAGCCGTCGGCGAAGAAAAGAAGCTTCCTCCTCCG 239
Query 260 TGATCTCTTCAAACTTTGCCGATCAATCTCAAGGGTTTTGCCTCGTGACAAAACC-AAAC 318
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 240 TGATATCTTCAAACTTTGCCGATCAATCTCAAGGGTTTTTCCTCGTGAC-AAACCTAAAC 298
Query 319 ATCATCATAAGGCTAAACACGACACAAAGGAAACCAAACGTCTTGATGAAGAACATAAAC 378
|||||||||||||| | | |||| |||||||||||| |||||||||||| |||||
Sbjct 299 ATCATCATAAGGCT--A-A--ACAC----GAAACCAAACGTTTTGATGAAGAACCTAAAC 349
Query 379 GGAATACACCAAACGCCTTCGAGTTTCGGGAAACGAAAGGGAT-TGGTAAAAATAATAAG 437
|||||| ||||||||||||||| ||||||| | | ||| | || ||||||||||
Sbjct 350 GGAATAAACCAAACGCCTTCGATTTTCGGGTTA-GTTTTCGATGTTGTCAAAATAATAAT 408
Query 438 GTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAACACCAATACCAAT 497
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTGGAAGGTGTCAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAACACCAATACCAAT 468
Query 498 TTCGTGGGGAGCAAGAAATCTCTTTCAAGAAGTTGTAGCCAGAACACAGCCAC-G----- 551
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 469 TTCGTGGGGAGCAAGAAATCTCTTTCAAGAAGTTGTAGCCAGAACACAGCCACAGCCACC 528
Query 552 GCGACCTCGACGAATCCGACGTTGCGGAGTTTATCGTTTATAGGGAGGAGCAAAAGCAGT 611
| | || ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 529 GGGGCCACGACGAATCCGACATTCCGGAGTTTATCGTTTATAGGGAGGAGCAAAAGCAGC 588
Query 612 AGCAACAGGATGACGGAATCTGGTGGATTTATGCCTACACTTATGAGATCGACAACCACG 671
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 589 AGCAATAGGATGACGGAATCCGGTGGATTTATGCCGACACTTATGAGATCGACAACCACG 648
Query 672 GTTCCAAGAAGCTTTGCAAATCCGATTTTGTATTCGAGTTCCTCTGCTAAAGTGGCTAAA 731
||||||||||||||||| || |||||||||||||||||||| || || ||||||||||||
Sbjct 649 GTTCCAAGAAGCTTTGCCAACCCGATTTTGTATTCGAGTTCATCGGCCAAAGTGGCTAAA 708
Query 732 CCTTCTCCAACGGAGAAGAAACTAAGATGCACTCTCGAAGAGCTATGCAACGGATGTACC 791
|| |||||||| |||||||||||| | || || ||||| |||||||| ||||||||||||
Sbjct 709 CCGTCTCCAACAGAGAAGAAACTACGCTGTACGCTCGAGGAGCTATGTAACGGATGTACC 768
Query 792 AAGAAGATCAAGATCA-AGAGAGATGTTATTACTAGCTTAGGGGAAAAGTGCGAGGAGGA 850
|||||||||||||||| | ||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 769 AAGAAGATCAAGATCACA-AGAGATGTTATTACTAGCTCAGGGCAAATGTGCGAGGAGGA 827
Query 851 AGAGATGGTGGAAATAAAAGTTAAACCGGGATGGAAAGGAGGTACGAAAGTAACATTCGA 910
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 828 AGAGACGGTGGAAATAAAAGTGAAACCGGGATGGAAAGGAGGGACGAAAGTAACATTTGA 887
Query 911 AGGCAAAGGAAACGAAGCAATGAGAAGTGTACCGGCAGATTTGACATTCGTGATTGTCGA 970
|||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||| ||
Sbjct 888 AGGCAAAGGAAACGAAGCAATGGGGAGTGTACCGGCTGATTTGACATTCTTGATTGTTGA 947
Query 971 GAAAGAGCATGAAGTGTTTAAAAGAGAAGGAGATGACCTCGAAATGGCGGTGGAAGTCTC 1030
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GAAAGAGCATGAGGTGTTCAAAAGAGAAGGAGATGACCTCGAAATGGCGGTGGAAGTCTC 1007
Query 1031 TCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTACTTGATGGTGACAATAT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTACTTGATGGTGACAATAT 1067
Query 1091 GAGGTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGAAAAGG 1150
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1068 GAGTTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGCAAAGG 1127
Query 1151 AATGCCAAATCTTAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGACTAA 1210
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AATGCCAAATCTAAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGACTAA 1187
Query 1211 GTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAGACTC 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1188 GTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAGTCTC 1247
Query 1271 TTCTTGATTTGTT-GCT-ACAGATTTTCTTTCCCATTATAGGGGAGCTTTAACAACATGG 1328
||||||||||||| ||| | ||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1248 TTCTTGATTTGTTTGCTTA-AGACTTTCTTTCCCTTTATAGGGGAGCTTTTACAACATGG 1306
Query 1329 TTTAGATaaaaaaaaTC-AAAGAGATTCTTACTCTTTTGTGTCTTCTTTGTTTTGTAAAC 1387
||||||| |||| || ||||||||| |||||||||||| ||||
Sbjct 1307 TTTAGATGAAAA---TCCAAAGAGATTTTTACTCTTTTGT----------------AAAC 1347
Query 1388 AACCAAGTTGGAATGAAGAAACCGGTTTCCATAATCAACCGAAAA 1432
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1348 AACCAAGTTGAAATGAAGAAACCGGTTTCCATAATCAACCGAAAA 1392
> Ahg475851 jgi|Araly1|475851|fgenesh2_kg.2__981__AT1G44160.1
Length=1218
Score = 580 bits (314), Expect = 7e-165
Identities = 357/376 (95%), Gaps = 9/376 (2%)
Strand=Plus/Plus
Query 972 AAAGAGCATGAAGTGTTTAAAAGAGAAGGAGATGACCTCGAAAT----GGCGGTGGAAGT 1027
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 773 AAAGAGCATGAGGTGTTCAAAAGAGAAGGAGATGACCTCGAAATGGCGGGCGGTGGAAGT 832
Query 1028 CTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTA-CTTGATGGTGACA 1086
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
Sbjct 833 CTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTATTGC-TTATCTTGATGGTGATA 891
Query 1087 ATATGAGGTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGAA 1146
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 892 ATATGAGTTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGCA 951
Query 1147 AAGGAATGCCAAATCTTAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGA 1206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AAGGAATGCCAAATCTAAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGA 1011
Query 1207 CTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAG 1071
Query 1267 ACTCTTCTTGATTTGTT-GCT-ACAGATTTTCTTTCCCATTATAGGGGAGCTTTAACAAC 1324
||||||||||||||||| ||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 1072 ACTCTTCTTGATTTGTTTGCTTA-AGACTTTCTTTCCCTTTATAGGGGAGCTTTTACAAC 1130
Query 1325 ATGGTTTAGATaaaaa 1340
||||||||||||||||
Sbjct 1131 ATGGTTTAGATAAAAA 1146
Score = 527 bits (285), Expect = 9e-149
Identities = 347/377 (92%), Gaps = 4/377 (1%)
Strand=Plus/Plus
Query 542 CACAGCCA-CGGCGACCTCGACGAATCCGACGTTGCGGAGTTTATCGTTTATAGGGAGGA 600
||| |||| ||| | || |||||||||| || || |||||||||||||||||||||||||
Sbjct 392 CACGGCCACCGG-GGCCACGACGAATCCAACATTCCGGAGTTTATCGTTTATAGGGAGGA 450
Query 601 GCAAAAGCAGTAGCAACAGGATGACGGAATCTGGTGGATTTATGCCTACACTTATGAGAT 660
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 451 GCAAAAGCAGCAGCAATAGGATGACGGAATCCGGTGGATTTATGCCGACACTTATGAGAT 510
Query 661 CGACAACCACGGTTCCAAGAAGCTTTGCAAATCCGATTTTGTATTCGAGTTCCTCTGCTA 720
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 511 CAACAACCACGGTTCCAAGAAGCTTTGCAAACCCGATTTTGTATTCGAGTTCCTCAGCCA 570
Query 721 AAGTGGCTAAACCTTCTCCAACGGAGAAGAAACTAAGATGCACTCTCGAAGAGCTATGCA 780
|||||||||||||||||||||| |||||||||||| | || || ||||| ||||||||||
Sbjct 571 AAGTGGCTAAACCTTCTCCAACAGAGAAGAAACTACGCTGTACGCTCGAGGAGCTATGCA 630
Query 781 ACGGATGTACCAAGAAGATCAAGATCA-AGAGAGATGTTATTACTAGCTTAGGGGAAAAG 839
||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||| |
Sbjct 631 ACGGATGTACCAAGAAGATCAAGATCACA-AGAGATGTTATTACTAGCTCAGGGCAAATG 689
Query 840 TGCGAGGAGGAAGAGATGGTGGAAATAAAAGTTAAACCGGGATGGAAAGGAGGTACGAAA 899
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 690 TGCGAGGAGGAAGAGACGGTGGAAATAAAAGTGAAACCGGGATGGAAAGGAGGGACGAAA 749
Query 900 GTAACATTCGAAGGCAA 916
|||||||||||||||||
Sbjct 750 GTAACATTCGAAGGCAA 766
Score = 263 bits (142), Expect = 3e-69
Identities = 165/175 (94%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 177 ctttctctttctctatctcCGCCGTGAATGGCAACACAAGGGATGGCTCAGCCTTCGGCG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 108 CTTTCTCTTTCTCTATCTCCGCCGTGAATGGCAACACAAGGGATGGCTCAGCCGTCGGCG 167
Query 237 AAGAAAAGAAGCTTCCTCCTCCGTGATCTCTTCAAACTTTGCCGATCAATCTCAAGGGTT 296
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 168 AAGAAAAGAAGCTTCCTCCTCCGTGATATCTTCAAACTTTGCCGATCAATCTCAAGGGTT 227
Query 297 TTGCCTCGTGACAAAACC-AAACATCATCAT-A-A-GGCTAAACACGACAC-AAA 346
|| |||||||||||| || |||||||||||| | | |||||||||||| || |||
Sbjct 228 TTTCCTCGTGACAAA-CCTAAACATCATCATCATAAGGCTAAACACGAAACCAAA 281
Score = 183 bits (99), Expect = 2e-45
Identities = 107/110 (97%), Gaps = 3/110 (3%)
Strand=Plus/Plus
Query 1 AACTTCTAATAATTAGATTATTAGTAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCT 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTTCTAATAATTAGATTATT--TAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCT 58
Query 61 GTGTTCCTATCTGTTTCCGTCAATGGCAAAAGATTTGGTCTAAAAAAGGA 110
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 59 GTGTTCCTATCTGTTTCCGTCAATGGCAAAAG-TTTGGTCTAAAAAAGGA 107
Score = 130 bits (70), Expect = 3e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 425 TAAAAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAA 484
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 308 TAATAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGCTATAGATTTGACAA 367
Query 485 CACCAATACCAATTTC 500
||||||||||||||||
Sbjct 368 CACCAATACCAATTTC 383
Score = 117 bits (63), Expect = 2e-25
Identities = 70/73 (96%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 1379 TTTGTAAACAACCAAGTTGGAATGAAGAAACCGGTTTCCATAATCAACCGAAAATCTTTT 1438
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1147 TTTGTAAACAACCAAGTTGAAATGAAGAAACCGGTTTCCATAATCAACCGAAAA-CTTTT 1205
Query 1439 ATTTATCAACTTC 1451
||||||| |||||
Sbjct 1206 ATTTATCGACTTC 1218
> Ahg473805 jgi|Araly1|473805|fgenesh2_kg.1__3759__AT1G44170.2
Length=1740
Score = 80.5 bits (43), Expect = 3e-14
Identities = 48/50 (96%), Gaps = 1/50 (2%)
Strand=Plus/Minus
Query 1402 GAAGAAACCGGTTTCCATAATCAACCGAAAATCTTTTATTTATCAACTTC 1451
||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1740 GAAGAAACCGGTTTCCATAATCAACCGAAAA-CTTTTATTTATCGACTTC 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54278599125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5