BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44170.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475854 jgi|Araly1|475854|fgenesh2_kg.2__984__AT1G44170.2 2213 0.0
Ahg473805 jgi|Araly1|473805|fgenesh2_kg.1__3759__AT1G44170.2 1794 0.0
Ahg926011 jgi|Araly1|926011|scaffold_201572.1 313 3e-84
Ahg475851 jgi|Araly1|475851|fgenesh2_kg.2__981__AT1G44160.1 82.4 1e-14
Ahg473802 jgi|Araly1|473802|fgenesh2_kg.1__3756__AT1G44160.1 60.2 5e-08
> Ahg475854 jgi|Araly1|475854|fgenesh2_kg.2__984__AT1G44170.2
Length=1649
Score = 2213 bits (1198), Expect = 0.0
Identities = 1391/1485 (94%), Gaps = 10/1485 (1%)
Strand=Plus/Plus
Query 50 aaGAGATATTGAGGAATGGCTGCGAAGAAGGTTTTTGGATCGGCGGAAGCGAGTAATTTG 109
|||||| ||||| ||||||| ||||||||| | |||||| ||||||| ||||||| ||||
Sbjct 119 AAGAGAAATTGAAGAATGGCGGCGAAGAAGATGTTTGGAGCGGCGGATGCGAGTATTTTG 178
Query 110 GTGACGGAGCTTCGTCGGAGTTTTGATGATGGTGTGACACGTGGTTATGAATGGAGAGTG 169
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 GTGACGGATCTTCGTCGGAGTTTTGATGATGGTGTGACTCGTGGTTATGAATGGAGAGTG 238
Query 170 ACTCAGCTTAAGAAACTGATGATTATTTGTGATAATCATGAGCCTGAGATCGTCGCGGCT 229
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACTCAGCTTAAGAAACTTTTGATTATTTGTGATAATCATGAGCCTGAGATCGTCGCGGCT 298
Query 230 CTTCGCGATGATCTTGGTAAGCCTGAGCTTGAATCTTCTGTTTATGAGGTATCTCTACTG 289
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 299 CTTCGCGACGATCTTGGGAAACCTGAGCTTGAATCTTCTGTTTATGAGGTATCTCTATTG 358
Query 290 AGAAACTCTATCAAGTTGGCTCTTAAGCAGCTAAAGAACTGGATGGCTCCGGAGAAGG-C 348
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 359 AGAAACTCTATCAAGTTAGCTCTTAAGCAGCTAAAGAACTGGATGGCGCCGGAGAAGGCC 418
Query 349 AAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGAGCCTCTTGGTGT 408
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 419 AAA-ACTTCTCTAACAACGTTTCCTGCATCGGCTGAGATTGTGTCTGAGCCTCTTGGTGT 477
Query 409 TGTGCTAGTGATCTCGGCTTGGAACTAT-CCTTTTCTGTTGTCTATTGATCCTGTTATTG 467
|||| |||| |||||||||||||||||| |||| | |||||||||||||||| |||||||
Sbjct 478 TGTGTTAGTTATCTCGGCTTGGAACTATCCCTTCT-TGTTGTCTATTGATCCAGTTATTG 536
Query 468 GTGCAATTTCTGCTGGGAATGCTGTTGTTTTAAAGCCATCAGAATTGGCTCCAGCTTCGT 527
|||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 537 GTGCGATTTCTGCTGGGAATGCTGTTGTCTTGAAGCCATCCGAATTGGCTCCAGCTTCGT 596
Query 528 CAGCTCTGCTCACTAAGTTACTGGAACAGTATCTTGATC-CTTCTGCGGTGCGAGTTGTC 586
| ||||||||| | |||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 597 CTGCTCTGCTCGCGAAGTTAATGGAACAGTATCTTGA-CTCTTCTGCGGTGCGAGTTGTT 655
Query 587 GAAGGAGCTGTTACCGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTAC 646
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 656 GAAGGAGCTGTTACTGAAACAACTGCTCTGCTGGAGCAGAAGTGGGACAAGATATTCTAC 715
Query 647 ACAGGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCACACCG 706
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 716 ACAGGTAGTTCAAAAATTGGGCGTGTCATAATGGCGGCAGCTGCGAAGCATCTTACACCG 775
Query 707 GTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTCGGATACCGATTTGAAA 766
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 GTTGTTCTGGAGCTTGGAGGAAAATCGCCTGTCGTTGTAGACTCGGATACCGATTTGAAA 835
Query 767 GTTACCGTCAGGCGGATAATCGTAGGCAAATGGGGTTGTAACAACGGACAGGCGTGCGTT 826
||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 836 GTTACTGTGAGGCGGATAATCGCAGGCAAATGGGGTTGCAACAACGGACAGGCGTGCATT 895
Query 827 TCGCCGGACTATATCTTGACGACAAAAGAATATGCTCCTAAATTGATTGATGCCATGAAG 886
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 896 TCGCCAGACTATATCTTGACGACAAAAGAATATGCTCCAAAAGTGATTGATGCCATGAAG 955
Query 887 CTTGAATTGGAGAAATTTTATGGGAAGAACCCTATAGAGTCGAAAGATATGTCACGTATC 946
|||||||||| |||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 956 AAAGAATTGGAGACATTTTATGGGAAGAACCCAATGGAGTCTAAAGATATGTCACGTATT 1015
Query 947 GTAAACTCGAATCACTTTGATCGCTTGTCTAAGTTGTTAGACGAGAAGGAAGTTTCTGAC 1006
|||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1016 GTAAACTCGACTCACTTTGATCGCTTGTCTAAGATGTTAGATGAGAAGGAAGTTTCTGAC 1075
Query 1007 AAAATTGTCTATGGTGGTGAAAAGGACAGAGAAAACT-TGAAAATTGCTCCGACAATCTT 1065
||||| ||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1076 AAAATCGTCTACGGTGGTGAAAAGGACAGAGAAAA-TCTGAAAATTGCTCCAACAATCTT 1134
Query 1066 GCTCGATGTACCATTAGATTCTCTGATCATGAGTGAAGAAATATTTGGCCCTCTCCTTCC 1125
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GCTTGACGTACCATTAGATTCTCTGATCATGAGTGAAGAAATATTTGGCCCTCTCCTTCC 1194
Query 1126 AATCCTCACGCTTAACAACTTGGAAGAGAGCTTTGACGTGATTCGTTCTCGACCTAAGCC 1185
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1195 AATCCTCACGCTTAACAACTTGGAAGAGAGTTTTGACGTGATTCGTTCTCGACCTAAGCC 1254
Query 1186 ACTTGCGGCATACT-TGTTTACACATAACAAGAAGTTGAAAGAGAGATTCGCAGCGACAG 1244
|||||| ||||| | |||||||||||||||||||| ||||||||| ||| | ||||||||
Sbjct 1255 ACTTGCTGCATA-TATGTTTACACATAACAAGAAGCTGAAAGAGAAATTTGTAGCGACAG 1313
Query 1245 TCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATCTTGCACTTCACACATTGC 1304
| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
Sbjct 1314 TTTCCGCTGGAGGCATAGTGGTGAACGACATAGCTGTTCATCTTGCACTTCACACATTAC 1373
Query 1305 CATTCGGAGGAGTTGGTGAAAGTGGAATGGGTGCTTACCATGGTAAATTCTCATTTGATG 1364
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1374 CATTTGGAGGAGTTGGTGAAAGTGGAATGGGTGCTTACCATGGTAAATTTTCATTTGATG 1433
Query 1365 CTTTTAGTCACAAGAAGGCGGTTCTCTACAGAAGCCTTTTCGGTGATTCAGCCGTCAGGT 1424
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1434 CTTTTAGTCACAAGAAGGCTGTTCTCTACAGAAGCCTTTTCGGTGATTCAGCAGTCAGGT 1493
Query 1425 ATCCGCCATACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGACAGCAATATAT 1484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ATCCGCCTTACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGACAGCAATATAT 1553
Query 1485 TCGATTTATTCAAAGTCCTTCTCGGTTTAGCTTAAACGGTAAAAA 1529
||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 1554 TCGATATATTCAAAGTTCTTCTCGGTTTATCTTAAACGGTAAAAA 1598
> Ahg473805 jgi|Araly1|473805|fgenesh2_kg.1__3759__AT1G44170.2
Length=1740
Score = 1794 bits (971), Expect = 0.0
Identities = 1165/1256 (93%), Gaps = 23/1256 (2%)
Strand=Plus/Plus
Query 278 GTATCTCTACTGAGAAACTCTATCAAGTTGGCTCTTAAGCAGCTAAAGAACTGGATGGCT 337
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 426 GTATCTTTACTGAGAAACTCTATCAAGTTAGCTCTTAAGCAGCTAAAGAACTGGATGGCG 485
Query 338 CCGGAGAAGG-CAAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGA 396
|||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 486 CCGGAGAAGGCCAAA-ACTTCTCTAACAACGTTTCCTGCATCGGCCGAGATTGTGTCTGA 544
Query 397 GCCTCTTGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCTGTTGTCTATTGA 456
|||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||
Sbjct 545 GCCTCTTGGTGTTGTGTTAGTTATCTCGGCTTGGAACTATCCCTTCCTGTTGTCTATTGA 604
Query 457 TCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTGTTTTAAAGCCATCAGAATTGGC 516
||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 605 TCCTGTTATTGGTGCGATTTCTGCTGGGAATGCTGTTGTCTTGAAGCCATCGGAATTGGC 664
Query 517 TCCAGCTTCGTCAGCTCTGCTCACTAAGTTACTGGAACAGTATCTTGATCCTTCTGCGGT 576
|||||||||||| |||||||| | |||||||||||||||||||||||| |||||| |||
Sbjct 665 TCCAGCTTCGTCTGCTCTGCTTGCGAAGTTACTGGAACAGTATCTTGATTCTTCTGTGGT 724
Query 577 GCGAGTTGTCGAAGGAGCTGTTACCGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAA 636
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 725 GCGAGTTGTCGAAGGAGCTGTTACTGAAACAACTGCTCTGCTGGAGCAGAAGTGGGACAA 784
Query 637 GATATTCTACACAGGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCA 696
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 785 GATATTCTACACAGGTAGTTCAAAAATTGGGCGTGTCATAATGGCGGCAGCTGCGAAGCA 844
Query 697 TCTCACACCGGTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTCGGATAC 756
||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 845 TCTTACACCGGTTGTTCTGGAGCTTGGAGGAAAATCGCCTGTTGTTGTAGACTCGGATAC 904
Query 757 CGATTTGAAAGTTACCGTCAGGCGGATAATCGTAGGCAAATGGGGTTGTAACAACGGACA 816
||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 905 CGATTTGAAAGTTACTGTGAGGCGGATAATCGCAGGCAAATGGGGTTGCAACAACGGACA 964
Query 817 GGCGTGCGTTTCGCCGGACTATATCTTGACGACAAAAGAATATGCTCCTAAATTGATTGA 876
||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 965 GGCGTGCATTTCGCCAGACTATATCTTGACGACAAAAGAATATGCTCCAAAAGTGATTGA 1024
Query 877 TGCCATGAAGCTTGAATTGGAGAAATTTTATGGGAAGAACCCTATAGAGTCGAAAGATAT 936
|||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1025 TGCCATGAAGAAAGAATTGGAGACGTTTTATGGGAAGAACCCTATGGAGTCTAAAGATAT 1084
Query 937 GTCACGTATCGTAAACTCGAATCACTTTGATCGCTTGTCTAAGTTGTTAGACGAGAAGGA 996
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct 1085 GTCACGTATCGTAAACTCGACTCACTTTGATCGCTTGTCTAAGCTGTTAGATGAGAAGGA 1144
Query 997 AGTTTCTGACAAAATTGTCTATGGTGGTGAAAAGGACAGAGAAAACT-TGAAAATTGCTC 1055
||||||||||||||| ||||| |||||||||||||||| |||||| | ||||||| ||||
Sbjct 1145 AGTTTCTGACAAAATCGTCTACGGTGGTGAAAAGGACAAAGAAAA-TCTGAAAATCGCTC 1203
Query 1056 CGACAATCTTGCTCGATGTACCATTAGATTCTCTGATCATGAGTGAAGAAA-TATTTGGC 1114
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1204 CAACAATCTTGCTCGATGTACCATTAGATTCTCTGATCATGAGTGAAGAAAATATTTGGC 1263
Query 1115 CCTCTCCTTCCAATCCTCACGCTTAACAACTTGGAAGAGAGCTTTGACGTGATTCGTTCT 1174
|||||||||||||| || | || | | | ||| ||||| ||||||| |||
Sbjct 1264 CCTCTCCTTCCAAT--TC----T---CA-C--G-A-GAGT--TTTGATATGATTCGCTCT 1307
Query 1175 CGACCTAAGCCACTTGCGGCATACTTGTTTACACATAACAAGAAGTTGAAAGAGAGATTC 1234
||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1308 CGACCTAAGCCACTTGCTGCATACTTGTTTACTCATAACAAGAAGCTGAAAGAGAGATTT 1367
Query 1235 GCAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATCTTGCACTT 1294
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1368 GCAACGACAGTCTCCGCTGGAGGCATAGTGGTCAATGACATAGCTGTTCATCTTGCACTT 1427
Query 1295 CACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGTGCTTACCATGGTAAATTC 1354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1428 CACACATTGCCATTCGGAGGAGTTGGCGAAAGTGGAATGGGTGCTTACCATGGTAAATTC 1487
Query 1355 TCATTTGATGCTTTTAGTCACAAGAAGGCGGTTCTCTACAGAAGCCTTTTCGGTGATTCA 1414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1488 TCATTTGATGCTTTTAGTCACAAGAAGGCTGTTCTCTACAGAAGCCTTTTCGGTGATTCA 1547
Query 1415 GCCGTCAGGTATCCGCCATACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGAC 1474
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GCAGTCAGGTATCCGCCTTACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGAT 1607
Query 1475 AGCAATATATTCGATTTATTCAAAG-TCCTTCTCGGTTTAGCTTAAACGGTAAAAA 1529
||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||
Sbjct 1608 AGCAATATATTCGATATATTCAAAGCTC-TTCTCGGTTTATCTTAAACGGTAAAAA 1662
Score = 97.1 bits (52), Expect = 4e-19
Identities = 57/59 (97%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 1624 ATGAATATTGAAGTTGATAAATAAAAGATTTTCGGTTGATTATGGAAACCGGTTTCTTC 1682
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1683 ATGAATATTGAAGTCGATAAATAAAAG-TTTTCGGTTGATTATGGAAACCGGTTTCTTC 1740
> Ahg926011 jgi|Araly1|926011|scaffold_201572.1
Length=226
Score = 313 bits (169), Expect = 3e-84
Identities = 203/220 (92%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 51 AGAGATATTGAGGAATGGCTGCGAAGAAGGTTTTTGGATCGGCGGAAGCGAGTAATTTGG 110
|||||| |||||||||||| ||||||||| | |||||| ||||||| ||||||| |||||
Sbjct 7 AGAGATTTTGAGGAATGGCGGCGAAGAAGATGTTTGGAGCGGCGGATGCGAGTATTTTGG 66
Query 111 TGACGGAGCTTCGTCGGAGTTTTGATGATGGTGTGACACGTGGTTATGAATGGAGAGTGA 170
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 67 TGACGGATCTTCGTCGGAGTTTTGATGATTGTGTGACTCGTGGTTATGAATGGAGAGTGA 126
Query 171 CTCAGCTTAAGAAACTGATGATTATTTGTGATAATCATGAGCCTGAGATCGTCGCGGCTC 230
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 127 CTCAGCTTAAGAAACTTTTGATTATTTGTGATAATCATGAGCTTGAGATCGTCGCGGCTC 186
Query 231 TTCGCGATGATCTTGGTAAGCCTGAGCTTGAATCTTCTGT 270
||||||| |||||| | || ||||||||||||||||||||
Sbjct 187 TTCGCGACGATCTTTGAAAACCTGAGCTTGAATCTTCTGT 226
> Ahg475851 jgi|Araly1|475851|fgenesh2_kg.2__981__AT1G44160.1
Length=1218
Score = 82.4 bits (44), Expect = 1e-14
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 1633 GAAGTTGATAAATAAAAGATTTTCGGTTGATTATGGAAACCGGTTTCTTCA 1683
||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1218 GAAGTCGATAAATAAAAG-TTTTCGGTTGATTATGGAAACCGGTTTCTTCA 1169
> Ahg473802 jgi|Araly1|473802|fgenesh2_kg.1__3756__AT1G44160.1
Length=1392
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Minus
Query 1652 TTTTCGGTTGATTATGGAAACCGGTTTCTTCA 1683
||||||||||||||||||||||||||||||||
Sbjct 1392 TTTTCGGTTGATTATGGAAACCGGTTTCTTCA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5