BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44180.1 Length=1594 Score E Sequences producing significant alignments: (Bits) Value Ahg473806 jgi|Araly1|473806|fgenesh2_kg.1__3760__AT1G44180.1 1855 0.0 Ahg473822 jgi|Araly1|473822|fgenesh2_kg.1__3776__AT1G44820.1 1489 0.0 > Ahg473806 jgi|Araly1|473806|fgenesh2_kg.1__3760__AT1G44180.1 Length=1570 Score = 1855 bits (1004), Expect = 0.0 Identities = 1206/1304 (92%), Gaps = 11/1304 (1%) Strand=Plus/Plus Query 1 ATGGCGGTGtctcttcttctctggactctcttcctcttctcatttatcttctccctcCAA 60 ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1 ATGGCGGTGTCTCCTCTTCTCTGGACTCTCTTCCTCTTCTCGGTTATCTTCTCGATCCAA 60 Query 61 TCACACAGCAAAGAAGAAGAAGAAGACACACCAATCACACGATTCCAGCAATACTTAAGA 120 ||| |||| |||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 61 TCATACAG---TGAAGAAGAAGAAGATACACCGATCACGCGGTTCCAGCAATACTTAAGA 117 Query 121 TTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAATCTCTTTTCTTCTTGATCAA 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 118 TTCAACACCGCTCATCCAAACCCTAACTACACAGCACCAATCTCTTTTCTTCTTGATCAA 177 Query 181 GCAAGATCAATTGGTCTTACTTCTCGAACCATCGAGTTTGTTCCTGGTAAGCCAGTTCTT 240 || ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 178 GCTAGATCCATTGGTCTCACTTCTCGAACCATCGAGTTTGTTCATGGTAAGCCAGTTCTT 237 Query 241 CTCCTCACATGGCTAGGCTCAAACCTTAACCTTTCTTCAATTCTCTTCAACTCTCATCTC 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 238 CTCCTCACATGGCTAGGCTCAAACCTTAACCTTCCTTCAATTCTCTTCAACTCTCATCTC 297 Query 301 GATTCTGTTCCCGCGGAATCCGAGAAGTGGATACATCCACCATTCTCAGCTCACCGAACC 360 |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| | Sbjct 298 GATTCTGTTCCCGCGGAATCCGAGAAATGGATACATCCACCGTTCTCAGCTCAGAGAA-C 356 Query 361 A-TCGATGGTCATATCTACGCTCGCGGCGCGCAAGATGACAAGTGTATAGGAGTTCAGTA 419 | | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 357 AGTGGATGGTCATATCTACGCTCGTGGCGCGCAAGATGACAAGTGTATTGGAGTTCAGTA 416 Query 420 TCTAGAAGCAATCAGGAACTTGAAATCAAGAAGCTTC-TCTCCTCTTCGTACGATCCATA 478 ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| Sbjct 417 TCTAGAAGCAATCAGGAACTTGAAATCAAGAGGCTTCGT-TCCTCTTCGTACGATCCATA 475 Query 479 TCTCTTACGTACCTGAAGAAGAGATCGGTGGATTCGGTGGGATGATGAAATTCGCGGCGT 538 |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 476 TCTCTTACGTTCCTGAAGAAGAGATCGGTGGATTCGATGGGATGATGAAATTTGCGGCGT 535 Query 539 CTTCGGAGTTTAAAGATTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAGTCCCG 598 ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 536 CTTTGGAGTTTAGGGAGTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAGTCCGG 595 Query 599 GAGATGAGTTCAGGGTGTTTTACGCTGAACGAACTCCTTGGCATCTCGCTATCCGAGCTA 658 |||||||||| |||||||||||||||||||| ||||| |||||||||| ||| |||||| Sbjct 596 GAGATGAGTTTAGGGTGTTTTACGCTGAACGGACTCCATGGCATCTCGTTATTCGAGCTG 655 Query 659 ATGGTATGCCAGGTCATGGTGCTAAGCTTTATGATAATTCAGCTATGGAGAATTTGATGA 718 | || || ||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 656 AGGGGATTCCAGGGCATGGAGCTAAGCTTTATGATAATTCAGCTATGGAGAATTTGATGA 715 Query 719 AGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAGTTTGATTTTGTTAAAGCTGGTA 778 |||||||||||||||| |||| |||||| ||| | || |||||||| || || || || | Sbjct 716 AGAGTGTTGAGTTGATCTCTAAGTTTAGGGAGACGCAATTTGATTTGGTCAAGGCGGGGA 775 Query 779 AAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAACTCCCT 838 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 776 AAGCTGCGAATTCGGAGGTTATCTCTGTTAATCCAGCTTATCTTAAAGCTGGAACTCCCT 835 Query 839 CCACTACTGGATTTGTGATGAACATGCAACCTTCAGAAGCAGAAGTTGGGTATGATCTAA 898 ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||| Sbjct 836 CCACTACCGGATTTGTGATGAATATGCAACCTTCAGAGGCAGAAGTTGGGTATGATATAA 895 Query 899 GATTGCCTCCAATGGCAGATCCAGTTGCTTTGAAGAAAAGGATTGCTGAGGAATGGGCTC 958 | |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 896 GGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAAAGGATTGCTGAGGAATGGGCTC 955 Query 959 CTTCTATTAGGAACATGACCTACACGCTAAAACA-ACAAGGAAAGTTAACAGACCATTTA 1017 |||||||||||||||||||||||||| || || | | ||||||||||| |||| || ||| Sbjct 956 CTTCTATTAGGAACATGACCTACACGATAGAAGAGA-AAGGAAAGTTAGCAGATCAGTTA 1014 Query 1018 GGGCGACCTATAATGACTAC-AACAAATGATACCAATCCTTGGTGGTCTATCTTCAAGCA 1076 |||||||| ||||||||| | |||||||| | | |||||||||||||||||||||||||| Sbjct 1015 GGGCGACCGATAATGACT-CTAACAAATGGTTCTAATCCTTGGTGGTCTATCTTCAAGCA 1073 Query 1077 AGCTGTTGAAGCAACTGGAGGAAAACTCGCAAAGCCTGAAATATTGATTTCAACTACAGA 1136 |||| |||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| Sbjct 1074 AGCTATTGAAGCAACTGGAGGAAAACTTGCAAAACCTGAAATTTTGATTTCAAGTACAGA 1133 Query 1137 TTCACGCTTTATTCGCACTTTAGGAATACCAGTTCTAGGTTTCTCTCCAATGATCAATAC 1196 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1134 TTCACGCTTTATTCGCACTTTAGGAATTCCAGTTCTAGGTTTCTCTCCAATGATCAATAC 1193 Query 1197 ACCTATTTTAGTGCATGACCATAACGAGTTCCTTAAAGATACCGTGTTCATGAAAGGAAT 1256 ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1194 TCCTATCTTAGTGCATGATCATAACGAGTTTCTTAAAGATACAGTGTTCATGAAAGGAAT 1253 Query 1257 AGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1300 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 AGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1297 > Ahg473822 jgi|Araly1|473822|fgenesh2_kg.1__3776__AT1G44820.1 Length=1582 Score = 1489 bits (806), Expect = 0.0 Identities = 1145/1309 (87%), Gaps = 21/1309 (2%) Strand=Plus/Plus Query 1 ATGGCGGT-Gtc-tcttcttctctggactctcttcctcttct-catttatcttctccctc 57 |||||||| | | || |||||||||||||||||||||||||| || | |||||||| ||| Sbjct 21 ATGGCGGTCG-CTTC-TCTTCTCTGGACTCTCTTCCTCTTCTCCA-TCATCTTCTCACTC 77 Query 58 CAATCACACAGCAAAGAAGAAGAAGAAGACACACCAATCACACGATTCCAGCAATACTTA 117 ||||| | | | ||| |||||||||||||||||||| |||||| | Sbjct 78 CAATC-CTCTTC--CTCCTCCTCCTCAGATACACCAATCACACGATTCCAACAATACCTC 134 Query 118 AGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAATCTCTTTTCTTC-TTGA 176 |||||||||||||||||||||||||||||||||||||||||| |||| ||| || || | Sbjct 135 AGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAGTCTC-ATTCCTCATTAA 193 Query 177 TCAAGC-AAGATCAATTGGTCTTACTTCTCGAACCATCGAGTTTGTTC-CTGGTAAGCCA 234 ||||| | ||| || ||||| ||| || ||||||||| || | || ||||||| ||| Sbjct 194 CCAAGCTCA-ATCCATCGGTCTCACTACTAAAACCATCGAATTCG-TCTCTGGTAAACCA 251 Query 235 GTTCTTCTCCTCACATGGCTAGGCTCAAACCTTAACCTTTCTTCAATTCTCTTCAACTCT 294 ||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||| Sbjct 252 GTTCTCCTCCTCACATGGCTAGGCTCAAACCCTAACCTCCCATCAATTCTCTTCAACTCT 311 Query 295 CATCTCGATTCTGTTCCCGCGGAATCCGAGAAGTGGATACATCCACCATTCTCAGCTCAC 354 || ||||| || || ||||| ||||||||||| ||||| |||||||| |||||||||||| Sbjct 312 CACCTCGACTCAGTCCCCGCCGAATCCGAGAAATGGATTCATCCACCGTTCTCAGCTCAC 371 Query 355 CGAACCATCGATGGTCATATCTACGCTCGCGGCGCGCAAGATGACAAGTGTATAGGAGTT 414 ||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||| Sbjct 372 AAAACCAACGATGGTCACATCTACGCTCGCGGCGCGCAAGACGACAAGTGTATCGGAGTT 431 Query 415 CAGTATCTAGAAGCAATCAGGAACTTGAAATCAAGAAGCTTC-TCTCCTCTTCGTACGAT 473 || ||||||||| |||||||||| |||||||| ||| | ||| | ||||||||||||||| Sbjct 432 CAATATCTAGAATCAATCAGGAATTTGAAATCGAGAGGATTCGT-TCCTCTTCGTACGAT 490 Query 474 CCATATCTCTTACGTACCTGAAGAAGAGATCGGTGGATTCGGTGGGATGATGAAATTCGC 533 ||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 491 TCATATCTCTTATGTTCCTGAAGAAGAGATCGGTGGATTCGACGGGATGATGGAATTCGC 550 Query 534 GGCGTCTTCGGAGTTTAAAGATTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAG 593 ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 551 TGCGTCATCGGAGTTTAGGGATTTGAATTTGGGATTTGCTATGGATGAAGGACAAGCGAA 610 Query 594 TCCCGGAGATGAGTTCAGGGTGTTTTACGCTGAACGAACTCCTTGGCATCTCGCTATCCG 653 ||| || ||||| || ||||| ||||| ||||| || ||| ||| |||| | ||| Sbjct 611 TCCTGGTGATGAATTTAGGGTTTTTTATGCTGATCGGGTTCCGTGGAATCTTGTTATTAA 670 Query 654 AGCTAATGGTATGCCAGGTCATGGTGCTAAGCTTTATGATAATTCAGCTATGGAGAATTT 713 |||| | || || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 671 AGCTGAGGGGATTCCAGGTCATGGAGCTAAGCTTTATGATAATTCAGCTATGGAGAATTT 730 Query 714 GATGAAGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAGTTTGATTTTGTTAAAGC 773 |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| Sbjct 731 GATGAAGAGTGTTGAGTTGATTTCGAAGTTTAGAGAGACACAGTTTGATTTTGTTAAAGC 790 Query 774 TGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAAC 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 TGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAAC 850 Query 834 TCCCTCCACTACTGGATTTGTGATGAACATGCAACCTTCAGAAGCAGAAGTTGGGTATGA 893 ||| || |||||||| ||||||||||| ||||| |||||||||||||| | ||| ||||| Sbjct 851 TCCTTCTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAAGCAGAGGCTGGATATGA 910 Query 894 TCTAAGATTGCCTCCAATGGCAGATCCAGTTGCTTTGAAGAAAAGGATTGCTGAGGAATG 953 | |||| |||||||||||||||||||| | ||| ||||||||||||||||||| ||||| Sbjct 911 TTTAAGGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAAAGGATTGCTGAAGAATG 970 Query 954 GGCTCCTTCTATTAGGAACATGACCTACACGCTAAAACA-ACAAGGAAAGTTAACAGACC 1012 ||||||||||||||||||||||||||||||| ||| | | | |||||||||||| ||||| Sbjct 971 GGCTCCTTCTATTAGGAACATGACCTACACGATAATAGAGA-AAGGAAAGTTAAGAGACC 1029 Query 1013 ATTTAGGGCGACCTATAATGACTACAACAAATGATACCAATCCTTGGTGGTCTATCTTCA 1072 ||||||||||||||||||||||| || |||||||| | ||||| |||||||||||||||| Sbjct 1030 ATTTAGGGCGACCTATAATGACTCCAGCAAATGATTCTAATCCGTGGTGGTCTATCTTCA 1089 Query 1073 AGCAAGCTGTTGAAGCAACTGGAGGAAAACTCGCAAAGCCTGAAATATTGATTTCAACTA 1132 |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||| Sbjct 1090 AGCAAGCTGTTGAAGCAACTGGTGGAAAACTCGCAAAGCCTGAAATTTTGGCTTCCACTA 1149 Query 1133 CAGATTCACGCTTTATTCGCACTTTAGGAATACCAGTTCTAGGTTTCTCTCCAATGATCA 1192 |||| ||||| ||| |||||||||| ||||| |||||| | || ||||||||||||| || Sbjct 1150 CAGACTCACGTTTTCTTCGCACTTTGGGAATTCCAGTTTTCGGGTTCTCTCCAATGACCA 1209 Query 1193 ATACACCTATTTTAGTGCATGACCATAACGAGTTCCTTAAAG-ATACCGTGTTCATGAAA 1251 |||| ||||||||| |||||||||||||||||||||| |||| |||| || ||||||||| Sbjct 1210 ATACTCCTATTTTATTGCATGACCATAACGAGTTCCT-AAAGGATACTGTATTCATGAAA 1268 Query 1252 GGAATAGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1300 ||||||| |||||||||||| |||||||||||| ||||||||||||||| Sbjct 1269 GGAATAGAAGTATATGAATCGGTTATCAGCGCTTTAAGTTCCTTTGAGG 1317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59725504160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5