BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44180.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473806 jgi|Araly1|473806|fgenesh2_kg.1__3760__AT1G44180.1 1855 0.0
Ahg473822 jgi|Araly1|473822|fgenesh2_kg.1__3776__AT1G44820.1 1489 0.0
> Ahg473806 jgi|Araly1|473806|fgenesh2_kg.1__3760__AT1G44180.1
Length=1570
Score = 1855 bits (1004), Expect = 0.0
Identities = 1206/1304 (92%), Gaps = 11/1304 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTGtctcttcttctctggactctcttcctcttctcatttatcttctccctcCAA 60
||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1 ATGGCGGTGTCTCCTCTTCTCTGGACTCTCTTCCTCTTCTCGGTTATCTTCTCGATCCAA 60
Query 61 TCACACAGCAAAGAAGAAGAAGAAGACACACCAATCACACGATTCCAGCAATACTTAAGA 120
||| |||| |||||||||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 61 TCATACAG---TGAAGAAGAAGAAGATACACCGATCACGCGGTTCCAGCAATACTTAAGA 117
Query 121 TTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAATCTCTTTTCTTCTTGATCAA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 TTCAACACCGCTCATCCAAACCCTAACTACACAGCACCAATCTCTTTTCTTCTTGATCAA 177
Query 181 GCAAGATCAATTGGTCTTACTTCTCGAACCATCGAGTTTGTTCCTGGTAAGCCAGTTCTT 240
|| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 GCTAGATCCATTGGTCTCACTTCTCGAACCATCGAGTTTGTTCATGGTAAGCCAGTTCTT 237
Query 241 CTCCTCACATGGCTAGGCTCAAACCTTAACCTTTCTTCAATTCTCTTCAACTCTCATCTC 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 CTCCTCACATGGCTAGGCTCAAACCTTAACCTTCCTTCAATTCTCTTCAACTCTCATCTC 297
Query 301 GATTCTGTTCCCGCGGAATCCGAGAAGTGGATACATCCACCATTCTCAGCTCACCGAACC 360
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |
Sbjct 298 GATTCTGTTCCCGCGGAATCCGAGAAATGGATACATCCACCGTTCTCAGCTCAGAGAA-C 356
Query 361 A-TCGATGGTCATATCTACGCTCGCGGCGCGCAAGATGACAAGTGTATAGGAGTTCAGTA 419
| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 357 AGTGGATGGTCATATCTACGCTCGTGGCGCGCAAGATGACAAGTGTATTGGAGTTCAGTA 416
Query 420 TCTAGAAGCAATCAGGAACTTGAAATCAAGAAGCTTC-TCTCCTCTTCGTACGATCCATA 478
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 417 TCTAGAAGCAATCAGGAACTTGAAATCAAGAGGCTTCGT-TCCTCTTCGTACGATCCATA 475
Query 479 TCTCTTACGTACCTGAAGAAGAGATCGGTGGATTCGGTGGGATGATGAAATTCGCGGCGT 538
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 476 TCTCTTACGTTCCTGAAGAAGAGATCGGTGGATTCGATGGGATGATGAAATTTGCGGCGT 535
Query 539 CTTCGGAGTTTAAAGATTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAGTCCCG 598
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 CTTTGGAGTTTAGGGAGTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAGTCCGG 595
Query 599 GAGATGAGTTCAGGGTGTTTTACGCTGAACGAACTCCTTGGCATCTCGCTATCCGAGCTA 658
|||||||||| |||||||||||||||||||| ||||| |||||||||| ||| ||||||
Sbjct 596 GAGATGAGTTTAGGGTGTTTTACGCTGAACGGACTCCATGGCATCTCGTTATTCGAGCTG 655
Query 659 ATGGTATGCCAGGTCATGGTGCTAAGCTTTATGATAATTCAGCTATGGAGAATTTGATGA 718
| || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGGGGATTCCAGGGCATGGAGCTAAGCTTTATGATAATTCAGCTATGGAGAATTTGATGA 715
Query 719 AGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAGTTTGATTTTGTTAAAGCTGGTA 778
|||||||||||||||| |||| |||||| ||| | || |||||||| || || || || |
Sbjct 716 AGAGTGTTGAGTTGATCTCTAAGTTTAGGGAGACGCAATTTGATTTGGTCAAGGCGGGGA 775
Query 779 AAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAACTCCCT 838
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 776 AAGCTGCGAATTCGGAGGTTATCTCTGTTAATCCAGCTTATCTTAAAGCTGGAACTCCCT 835
Query 839 CCACTACTGGATTTGTGATGAACATGCAACCTTCAGAAGCAGAAGTTGGGTATGATCTAA 898
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 836 CCACTACCGGATTTGTGATGAATATGCAACCTTCAGAGGCAGAAGTTGGGTATGATATAA 895
Query 899 GATTGCCTCCAATGGCAGATCCAGTTGCTTTGAAGAAAAGGATTGCTGAGGAATGGGCTC 958
| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 896 GGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAAAGGATTGCTGAGGAATGGGCTC 955
Query 959 CTTCTATTAGGAACATGACCTACACGCTAAAACA-ACAAGGAAAGTTAACAGACCATTTA 1017
|||||||||||||||||||||||||| || || | | ||||||||||| |||| || |||
Sbjct 956 CTTCTATTAGGAACATGACCTACACGATAGAAGAGA-AAGGAAAGTTAGCAGATCAGTTA 1014
Query 1018 GGGCGACCTATAATGACTAC-AACAAATGATACCAATCCTTGGTGGTCTATCTTCAAGCA 1076
|||||||| ||||||||| | |||||||| | | ||||||||||||||||||||||||||
Sbjct 1015 GGGCGACCGATAATGACT-CTAACAAATGGTTCTAATCCTTGGTGGTCTATCTTCAAGCA 1073
Query 1077 AGCTGTTGAAGCAACTGGAGGAAAACTCGCAAAGCCTGAAATATTGATTTCAACTACAGA 1136
|||| |||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||
Sbjct 1074 AGCTATTGAAGCAACTGGAGGAAAACTTGCAAAACCTGAAATTTTGATTTCAAGTACAGA 1133
Query 1137 TTCACGCTTTATTCGCACTTTAGGAATACCAGTTCTAGGTTTCTCTCCAATGATCAATAC 1196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 TTCACGCTTTATTCGCACTTTAGGAATTCCAGTTCTAGGTTTCTCTCCAATGATCAATAC 1193
Query 1197 ACCTATTTTAGTGCATGACCATAACGAGTTCCTTAAAGATACCGTGTTCATGAAAGGAAT 1256
||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1194 TCCTATCTTAGTGCATGATCATAACGAGTTTCTTAAAGATACAGTGTTCATGAAAGGAAT 1253
Query 1257 AGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1300
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1297
> Ahg473822 jgi|Araly1|473822|fgenesh2_kg.1__3776__AT1G44820.1
Length=1582
Score = 1489 bits (806), Expect = 0.0
Identities = 1145/1309 (87%), Gaps = 21/1309 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGT-Gtc-tcttcttctctggactctcttcctcttct-catttatcttctccctc 57
|||||||| | | || |||||||||||||||||||||||||| || | |||||||| |||
Sbjct 21 ATGGCGGTCG-CTTC-TCTTCTCTGGACTCTCTTCCTCTTCTCCA-TCATCTTCTCACTC 77
Query 58 CAATCACACAGCAAAGAAGAAGAAGAAGACACACCAATCACACGATTCCAGCAATACTTA 117
||||| | | | ||| |||||||||||||||||||| |||||| |
Sbjct 78 CAATC-CTCTTC--CTCCTCCTCCTCAGATACACCAATCACACGATTCCAACAATACCTC 134
Query 118 AGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAATCTCTTTTCTTC-TTGA 176
|||||||||||||||||||||||||||||||||||||||||| |||| ||| || || |
Sbjct 135 AGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAGTCTC-ATTCCTCATTAA 193
Query 177 TCAAGC-AAGATCAATTGGTCTTACTTCTCGAACCATCGAGTTTGTTC-CTGGTAAGCCA 234
||||| | ||| || ||||| ||| || ||||||||| || | || ||||||| |||
Sbjct 194 CCAAGCTCA-ATCCATCGGTCTCACTACTAAAACCATCGAATTCG-TCTCTGGTAAACCA 251
Query 235 GTTCTTCTCCTCACATGGCTAGGCTCAAACCTTAACCTTTCTTCAATTCTCTTCAACTCT 294
||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 252 GTTCTCCTCCTCACATGGCTAGGCTCAAACCCTAACCTCCCATCAATTCTCTTCAACTCT 311
Query 295 CATCTCGATTCTGTTCCCGCGGAATCCGAGAAGTGGATACATCCACCATTCTCAGCTCAC 354
|| ||||| || || ||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 312 CACCTCGACTCAGTCCCCGCCGAATCCGAGAAATGGATTCATCCACCGTTCTCAGCTCAC 371
Query 355 CGAACCATCGATGGTCATATCTACGCTCGCGGCGCGCAAGATGACAAGTGTATAGGAGTT 414
||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 372 AAAACCAACGATGGTCACATCTACGCTCGCGGCGCGCAAGACGACAAGTGTATCGGAGTT 431
Query 415 CAGTATCTAGAAGCAATCAGGAACTTGAAATCAAGAAGCTTC-TCTCCTCTTCGTACGAT 473
|| ||||||||| |||||||||| |||||||| ||| | ||| | |||||||||||||||
Sbjct 432 CAATATCTAGAATCAATCAGGAATTTGAAATCGAGAGGATTCGT-TCCTCTTCGTACGAT 490
Query 474 CCATATCTCTTACGTACCTGAAGAAGAGATCGGTGGATTCGGTGGGATGATGAAATTCGC 533
||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 491 TCATATCTCTTATGTTCCTGAAGAAGAGATCGGTGGATTCGACGGGATGATGGAATTCGC 550
Query 534 GGCGTCTTCGGAGTTTAAAGATTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAG 593
||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 551 TGCGTCATCGGAGTTTAGGGATTTGAATTTGGGATTTGCTATGGATGAAGGACAAGCGAA 610
Query 594 TCCCGGAGATGAGTTCAGGGTGTTTTACGCTGAACGAACTCCTTGGCATCTCGCTATCCG 653
||| || ||||| || ||||| ||||| ||||| || ||| ||| |||| | |||
Sbjct 611 TCCTGGTGATGAATTTAGGGTTTTTTATGCTGATCGGGTTCCGTGGAATCTTGTTATTAA 670
Query 654 AGCTAATGGTATGCCAGGTCATGGTGCTAAGCTTTATGATAATTCAGCTATGGAGAATTT 713
|||| | || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 671 AGCTGAGGGGATTCCAGGTCATGGAGCTAAGCTTTATGATAATTCAGCTATGGAGAATTT 730
Query 714 GATGAAGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAGTTTGATTTTGTTAAAGC 773
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 731 GATGAAGAGTGTTGAGTTGATTTCGAAGTTTAGAGAGACACAGTTTGATTTTGTTAAAGC 790
Query 774 TGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAAC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAAC 850
Query 834 TCCCTCCACTACTGGATTTGTGATGAACATGCAACCTTCAGAAGCAGAAGTTGGGTATGA 893
||| || |||||||| ||||||||||| ||||| |||||||||||||| | ||| |||||
Sbjct 851 TCCTTCTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAAGCAGAGGCTGGATATGA 910
Query 894 TCTAAGATTGCCTCCAATGGCAGATCCAGTTGCTTTGAAGAAAAGGATTGCTGAGGAATG 953
| |||| |||||||||||||||||||| | ||| ||||||||||||||||||| |||||
Sbjct 911 TTTAAGGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAAAGGATTGCTGAAGAATG 970
Query 954 GGCTCCTTCTATTAGGAACATGACCTACACGCTAAAACA-ACAAGGAAAGTTAACAGACC 1012
||||||||||||||||||||||||||||||| ||| | | | |||||||||||| |||||
Sbjct 971 GGCTCCTTCTATTAGGAACATGACCTACACGATAATAGAGA-AAGGAAAGTTAAGAGACC 1029
Query 1013 ATTTAGGGCGACCTATAATGACTACAACAAATGATACCAATCCTTGGTGGTCTATCTTCA 1072
||||||||||||||||||||||| || |||||||| | ||||| ||||||||||||||||
Sbjct 1030 ATTTAGGGCGACCTATAATGACTCCAGCAAATGATTCTAATCCGTGGTGGTCTATCTTCA 1089
Query 1073 AGCAAGCTGTTGAAGCAACTGGAGGAAAACTCGCAAAGCCTGAAATATTGATTTCAACTA 1132
|||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||
Sbjct 1090 AGCAAGCTGTTGAAGCAACTGGTGGAAAACTCGCAAAGCCTGAAATTTTGGCTTCCACTA 1149
Query 1133 CAGATTCACGCTTTATTCGCACTTTAGGAATACCAGTTCTAGGTTTCTCTCCAATGATCA 1192
|||| ||||| ||| |||||||||| ||||| |||||| | || ||||||||||||| ||
Sbjct 1150 CAGACTCACGTTTTCTTCGCACTTTGGGAATTCCAGTTTTCGGGTTCTCTCCAATGACCA 1209
Query 1193 ATACACCTATTTTAGTGCATGACCATAACGAGTTCCTTAAAG-ATACCGTGTTCATGAAA 1251
|||| ||||||||| |||||||||||||||||||||| |||| |||| || |||||||||
Sbjct 1210 ATACTCCTATTTTATTGCATGACCATAACGAGTTCCT-AAAGGATACTGTATTCATGAAA 1268
Query 1252 GGAATAGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1300
||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 1269 GGAATAGAAGTATATGAATCGGTTATCAGCGCTTTAAGTTCCTTTGAGG 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5