BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44191.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473807 jgi|Araly1|473807|fgenesh2_kg.1__3761__AT1G44191.1 1491 0.0
> Ahg473807 jgi|Araly1|473807|fgenesh2_kg.1__3761__AT1G44191.1
Length=1062
Score = 1491 bits (807), Expect = 0.0
Identities = 993/1081 (92%), Gaps = 20/1081 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAGCCTCATCTTCCTCGTACCAATCCTTTGTCTCGTCATTTCACCAACCACAACG 60
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAAGAGCCTCATTTTCCTCGTACCTCTCCTTTGTCTCATCATTTCACCAACCACAACG 60
Query 61 ATCGCTAGTTGGCCAAAACCTTCGGAAGTTTCCAATGAGGACATGTTGATGAATACCGAA 120
|| || ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 61 ATTGCAAGTTGGCCAAAACCTTCGGAAGTCTCCAAAGAGGACATGCTGATGAATACCGAC 120
Query 121 CACAACCATTACTTTGGTAATAAATTGAACTTCAAAGATTCCAAAGTCTGGAAATGTACA 180
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 121 CACAACCATTACTTTGGTAATAAATTGAACTACGAAGATTCCAAAGTCTGGAAATGTACA 180
Query 181 TACAACAACGGATCTGGAGCTGCCGTCTCTATTTCCTACCCTTCACCTCCACATCCGCCG 240
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 181 TACAACAACGGATCTGGAGCCGCCGTCTCTATTTCCTACCCTGCACCTCCACATCCTCCG 240
Query 241 TCTCCGAAGCCACCAACTCCGTCGTCTCGGCCTCCGTCACCTCTATCACCGAAAAAGTCT 300
|| || |||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 241 TCACCAAAGCTACCAACTCCGTCGTCTCGGCCTCCTTCACCTCTATCTCCAAAAAAGTCT 300
Query 301 CCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCACCACCGCCT 360
|||||| ||||||||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct 301 CCACCACCGCCTAAACCATCACCGCCGCCACGAACTCCCAAAAAGTCTCCACCACC---T 357
Query 361 AAACCATCATCGCCGCCACCAA-TACCCAAAAAGTCTCCACCACCTCCTAAACCCTCATC 419
|| ||||||||||| ||||||| | |||||||||||||||||||| |||||||| |||||
Sbjct 358 AAGCCATCATCGCCTCCACCAACT-CCCAAAAAGTCTCCACCACCGCCTAAACCATCATC 416
Query 420 GCCGCCACCAACCCCCAAAAAGTCTCCACCACCGCCTAAACCATCATCCCCGCCACCAAG 479
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 417 GCCGCCACCAACTCCCAAAAAGTCTCCACCATCGCCTAAACCATCATCGCCGCCACCAAG 476
Query 480 TCCCAAAAAGTCTCCACCACCTCCTAAACCATCCCCGTCTCCTCCAAAACCATCAACACC 539
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 477 TCCCAAAAAGTCTCCGCCACCTCCTAAACCATCTCCGTCTCCTCCTAAACCATCTACGCC 536
Query 540 TCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACCGCCACCAAG 599
||||||||| |||||||||||||| ||||||||| ||||| || ||||| ||||||||
Sbjct 537 TCCACCAACTCCTAAGAAGTCTCCGCCCTCTCCT---AAACCATCATCACCACCACCAAG 593
Query 600 TCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACCATCAACGCC 659
|| ||||| ||||| |||||||||||||||||| | || |||||| | ||
Sbjct 594 CCCCAAAAAGTCTCCCCCGCCTCCTAAACCATCT--A---------AA-CCATCATCACC 641
Query 660 ACCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCAGCCACCTCCTAAACC 719
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 642 GCCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCCGCCACCTCCTAAACC 701
Query 720 ATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACCATCAACAACTCCACCATC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACCATCAACAACTCCACCATC 761
Query 780 TCCTAAACCATCACCTCCGCGTCCAACTCCCAAGAAGTCTCCACCACCACCAACAACTCC 839
||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 762 TCCAAAAATTTCACCTCCGCGTCCAACTCCCAAGAAGTCTCCACCACCGCCACCAACTCC 821
Query 840 GTCGCCTAGTTATCAGGATCCGTGGGTGCATTTCGCGAACTGCATTAGCGAATTTGGACC 899
| | | | | ||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 822 GGCACATCGATATCAAAATCCGTGGGTGCATTTCGCGAGCTGCATTAGCGAATTTGGACC 881
Query 900 GTCGGCAATATGTAAGCAACAGATGGAAGTAAGTTACTACAGAAGAGGGTTTCTTGTTAG 959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 882 GTCGGCAATATGTAAGCAACAGATGGAGGTAAGTTACTACAGAAGAGGGTTTCTTGTTAG 941
Query 960 TGACTATTGCTGCAACCTTATTGTCAACATGAGACATGAATGTACCGATGTCATTTTGGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TGACTATTGCTGCAACCTTATTGTCAACATGAGACATGAATGTACCGATGTCATTTTGGG 1001
Query 1020 CTTCTTCACCGATCCTTTCTTCGTTCCACTTATTCGTTACACTTGCCATGTTAAGTATTA 1079
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1002 CTTCTTCACCGATCCTTTCTTCGTTCCTCTTATTCGTTACACTTGTCATGTTAAGTATTA 1061
Query 1080 G 1080
|
Sbjct 1062 G 1062
Score = 289 bits (156), Expect = 4e-77
Identities = 307/376 (82%), Gaps = 25/376 (7%)
Strand=Plus/Plus
Query 292 AAAAAGTCTCCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCA 351
||||||||||||||| ||||| |||||| |||| |||| ||| |||||||| || |||
Sbjct 340 AAAAAGTCTCCACCA---CCTAAGCCATCATCGCCTCCACCAACTCCCAAAAAGTCTCCA 396
Query 352 CCACCGCCTAAACCATCATCGCCGCCACCAA-TACCCAAAAAGTCTCCACCACCTCCTAA 410
||||||||||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct 397 CCACCGCCTAAACCATCATCGCCGCCACCAACT-CCCAAAAAGTCTCCACCATCGCCTAA 455
Query 411 ACCCTCATCGCCGCCACCAACCCCCAAAAAGTCTCCACCACCGCCTAAACCATCATCCC- 469
||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 456 ACCATCATCGCCGCCACCAAGTCCCAAAAAGTCTCCGCCACCTCCTAAACCATC-TCCGT 514
Query 470 CGCCACC-AAGTCCCAAAAA-GTCTCCACCACCTCCTAA-ACCATCCCCGTC-TCCTCCA 525
| || || || || | | | |||||||| ||||||| | || ||| | || |||
Sbjct 515 CTCCTCCTAAA-CC-ATCTACGCCTCCACCAACTCCTAAGAAG-TCTCCGCCCTC-TCCT 570
Query 526 AAACCATCAACACCTCCACCAA-CACCTAAGAAGTCTCCTCCCTC-TCCT---CC--C-A 577
||||||||| |||| ||||||| | || || |||||||| ||| | |||| || | |
Sbjct 571 AAACCATCATCACCACCACCAAGCCCCAAA-AAGTCTCC-CCCGCCTCCTAAACCATCTA 628
Query 578 AACCCTCGTCACCGCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCAT 637
|||| || ||||||||||||| |||||| || ||||| || ||||| |||||||||||
Sbjct 629 AACCATCATCACCGCCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCCGC 688
Query 638 CTCCTCCTAAACCATC 653
| ||||||||||||||
Sbjct 689 CACCTCCTAAACCATC 704
Score = 206 bits (111), Expect = 4e-52
Identities = 244/302 (81%), Gaps = 33/302 (11%)
Strand=Plus/Plus
Query 436 AAAAAGTCTCCACCACCGCCTAAACCATCATCC-CCGCCACCAAGTCCCAAAAAGTCTCC 494
|||||||||||||||||||||||||||||| || ||||||| || |||||||||||||||
Sbjct 292 AAAAAGTCTCCACCACCGCCTAAACCATCA-CCGCCGCCACGAACTCCCAAAAAGTCTCC 350
Query 495 ACCACCT---CC-TAA--------ACCATC-CCC-----GTCTCCTCCA------AAACC 530
||||||| || | | |||| | ||| |||||| ||| |||||
Sbjct 351 ACCACCTAAGCCATCATCGCCTCCACCAACTCCCAAAAAGTCTCCACCACCGCCTAAACC 410
Query 531 ATCAACACCTCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACC 590
|||| | || |||||||| || || |||||||| || || ||| ||||| || || ||
Sbjct 411 ATCATCGCCGCCACCAACTCCCAAAAAGTCTCCACCATCGCCT---AAACCATCATCGCC 467
Query 591 GCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACC 650
|||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 468 GCCACCAAGTCCCAAAAAGTCTCCGCCACCTCCTAAACCATCTCCGTCTCCTCCTAAACC 527
Query 651 ATCAACGCCACCACCAACTCCTAAGAAGTCTCCGCCAC-CTCCCAAACCATC-TCAGCCA 708
||| ||||| |||||||||||||||||||||||||| | |||| |||||||| ||| |||
Sbjct 528 ATCTACGCCTCCACCAACTCCTAAGAAGTCTCCGCC-CTCTCCTAAACCATCATCA-CCA 585
Query 709 CC 710
||
Sbjct 586 CC 587
Score = 143 bits (77), Expect = 3e-33
Identities = 288/381 (76%), Gaps = 50/381 (13%)
Strand=Plus/Plus
Query 292 AAAAAGTCTCCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCA 351
|||||||||||||||||||||||||||||| |||| |||| || |||||||| || ||
Sbjct 433 AAAAAGTCTCCACCATCGCCTAAACCATCATCGCCGCCACCAAGTCCCAAAAAGTCTCCG 492
Query 352 CCACCGCCTAAACCATCATCGCCGCCACCAATACCCAAAAAGTCTCCACCACCTCCTAAA 411
||||| ||||||||||| || | | | || | || ||| | | | || ||
Sbjct 493 CCACCTCCTAAACCATC-TC-C-GTCTCC--T-CCTAAA----C-C-A-----TC-TA-- 532
Query 412 CCCTCATCGCCGCCACCAACCCCCAAAAAGTCTCCACCAC-CGCCTAAACCATCATCCCC 470
| | | || | |||||| || || |||||||| || | | |||||||||||||| ||
Sbjct 533 CGC-C-TC-C----ACCAACTCCTAAGAAGTCTCCGCC-CTCTCCTAAACCATCATCACC 584
Query 471 GCCACCAAGTCCCAAAAAGTCTCCACCACCTCCTAAACCATCCCCGTCTCCTCCAAAACC 530
|||||||| |||||||||||||| || |||||||||||||| | ||| ||
Sbjct 585 ACCACCAAGCCCCAAAAAGTCTCCCCCGCCTCCTAAACCATC----T-------AAA-CC 632
Query 531 ATCAACACCTCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACC 590
|||| |||| |||||||| |||||||||||||| || | | ||||||||| || || |
Sbjct 633 ATCATCACCGCCACCAACTCCTAAGAAGTCTCCGCCA-C-C-TCCCAAACCATC-TC-C- 686
Query 591 GCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACC 650
|||||| ||||||| |||||| || | || |||||||||||| | ||||||||||
Sbjct 687 GCCACC---TCCTAAACCATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACC 743
Query 651 ATCAACGCCACCACCAACTCC 671
|||||| | |||||| ||||
Sbjct 744 ATCAACAACTCCACCATCTCC 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5