BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44224.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922902 jgi|Araly1|922902|scaffold_104183.1 708 0.0
> Ahg922902 jgi|Araly1|922902|scaffold_104183.1
Length=722
Score = 708 bits (383), Expect = 0.0
Identities = 627/740 (85%), Gaps = 35/740 (5%)
Strand=Plus/Plus
Query 39 TTTTTGCTCTAATCATGAGTAGCTTCATTTTAGCAACAACACTCCTTATGGCTCTGATAT 98
||||||| ||||||||||| |||||||||||| | |||||||| || | |||||| |||
Sbjct 8 TTTTTGCACTAATCATGAGGAGCTTCATTTTAACCTCAACACTCTTTGTAGCTCTGCTAT 67
Query 99 GCTTCGTCTCTCTCCCGATTTCAACCGTTGGATTACAAAAGAAACCGTGGCCTAAGCCGT 158
|||| |||||||||||||||||||||||||| || | ||||| ||||||||||||||| |
Sbjct 68 GCTTTGTCTCTCTCCCGATTTCAACCGTTGGTTTTCGAAAGATACCGTGGCCTAAGCCAT 127
Query 159 CAGAATTAGTGGCAGGCCGCCACCACGGCAAAGGCTATAGCCGCCTTGGAGACTCCAAGA 218
||||| |||||||| | ||||||||||| || | ||||||| ||||||| ||||
Sbjct 128 CAGAACTAGTGGCA---AG---CCACGGCAAAGTCTCTGGCCGCCTAAGAGACTCTAAGA 181
Query 219 TTGGTTGGGGTACCTCTTCCCTATCAGACTCTAAAGCACCTCTATCGCCCCC-CGTATTG 277
|||||| || |||||||||| ||||||||||||| ||||||||||| ||||| | ||||
Sbjct 182 TTGGTTCGGCTACCTCTTCCGTATCAGACTCTAACGCACCTCTATCACCCCCAAG-ATTG 240
Query 278 CTACCGGGGTTTCCTAGCATCCCATGGCTTCCTAACATCCCAGGAATTCCCATCATCCCG 337
|||||||| ||||| | |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 241 CTACCGGGATTTCCCAACATCCCGTGGCTTCCTAACATCCCGGGAATTCCCATCATCCC- 299
Query 338 AGT--C-----TTCCCAATATCCCGAGTCTTCCCACCATCCCTGAAATACCAAACATTCC 390
| | | | || || || || || |||| | ||| || ||||||||||||| |||
Sbjct 300 AATCCCGGAAATACCAAACATTCCAAGGATTCCTAACATTCCGGAAATACCAAACA-TCC 358
Query 391 GA-GGATTCCTAACATCCCGGGGCTTCCTAACATTCCGGGCCTACCTAACCTCCCGAGCA 449
| || |||||||||| ||||| || |||||| | || || | ||||||||||| || |
Sbjct 359 CAGGGCTTCCTAACATTCCGGGCCTCCCTAACCTCCCAGGATTTCCTAACCTCCCTAG-A 417
Query 450 TTCCTAGAATCCCGGGACTTCCTCCTCTACCGTGGGT-CAAGTCAGAAGTTGTGTCGAAA 508
|| | ||||||||||||||| ||||| |||| ||| || |||||||| ||||||
Sbjct 418 ---CT----T-CCGGGACTTCCTCCTTTACCGCGGGTCCAA-TCGGAAGTTGTATCGAAA 468
Query 509 TCGGCTAAAGTGGAGAACTGCTTGACGAAAGATGGATCAAAGACCTCAAAGAAATCCTTT 568
||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct 469 TCGGCTAAAGTGGAGAAGTGCTTGACGAAAGATGGATCAAAGACCTCAGAGAAATGCTTT 528
Query 569 TCAAAAATATTGTCTAGCTGGGAAAAGAAAGATTATTTCACATTAATGGACGAGGAATGC 628
||| ||||||||||||||| || ||||||||| || || || | ||||| |||| |||
Sbjct 529 TCACAAATATTGTCTAGCTCGGCAAAGAAAGA-TA--TCGCA-T--TGGACAAGGAGTGC 582
Query 629 TGCGAGATCGTTGTGAATATGGACAAGAAGTGCAATAGCCACGTTCAAATGTTGTTCAAG 688
|| ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 583 TGTGAGATTGTTGTGAATATGGACAAGAAATGCAATAGGCACGTTCACATGTTGTTCAAG 642
Query 689 AGCCCATTCTTTGTTCCTCTTCTTCGATACTCGTGTCACATCAAGCACACCAAAGACTAA 748
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 643 AGCCCATTCATTGTTCCTCTTCTTCGATACTCGTGTCACATCAAGCACACCAAAGTCTAA 702
Query 749 GCGAGTCCCTCCAATGGATA 768
||||||||||||||||||||
Sbjct 703 GCGAGTCCCTCCAATGGATA 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5