BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44224.1 Length=863 Score E Sequences producing significant alignments: (Bits) Value Ahg922902 jgi|Araly1|922902|scaffold_104183.1 708 0.0 > Ahg922902 jgi|Araly1|922902|scaffold_104183.1 Length=722 Score = 708 bits (383), Expect = 0.0 Identities = 627/740 (85%), Gaps = 35/740 (5%) Strand=Plus/Plus Query 39 TTTTTGCTCTAATCATGAGTAGCTTCATTTTAGCAACAACACTCCTTATGGCTCTGATAT 98 ||||||| ||||||||||| |||||||||||| | |||||||| || | |||||| ||| Sbjct 8 TTTTTGCACTAATCATGAGGAGCTTCATTTTAACCTCAACACTCTTTGTAGCTCTGCTAT 67 Query 99 GCTTCGTCTCTCTCCCGATTTCAACCGTTGGATTACAAAAGAAACCGTGGCCTAAGCCGT 158 |||| |||||||||||||||||||||||||| || | ||||| ||||||||||||||| | Sbjct 68 GCTTTGTCTCTCTCCCGATTTCAACCGTTGGTTTTCGAAAGATACCGTGGCCTAAGCCAT 127 Query 159 CAGAATTAGTGGCAGGCCGCCACCACGGCAAAGGCTATAGCCGCCTTGGAGACTCCAAGA 218 ||||| |||||||| | ||||||||||| || | ||||||| ||||||| |||| Sbjct 128 CAGAACTAGTGGCA---AG---CCACGGCAAAGTCTCTGGCCGCCTAAGAGACTCTAAGA 181 Query 219 TTGGTTGGGGTACCTCTTCCCTATCAGACTCTAAAGCACCTCTATCGCCCCC-CGTATTG 277 |||||| || |||||||||| ||||||||||||| ||||||||||| ||||| | |||| Sbjct 182 TTGGTTCGGCTACCTCTTCCGTATCAGACTCTAACGCACCTCTATCACCCCCAAG-ATTG 240 Query 278 CTACCGGGGTTTCCTAGCATCCCATGGCTTCCTAACATCCCAGGAATTCCCATCATCCCG 337 |||||||| ||||| | |||||| ||||||||||||||||| ||||||||||||||||| Sbjct 241 CTACCGGGATTTCCCAACATCCCGTGGCTTCCTAACATCCCGGGAATTCCCATCATCCC- 299 Query 338 AGT--C-----TTCCCAATATCCCGAGTCTTCCCACCATCCCTGAAATACCAAACATTCC 390 | | | | || || || || || |||| | ||| || ||||||||||||| ||| Sbjct 300 AATCCCGGAAATACCAAACATTCCAAGGATTCCTAACATTCCGGAAATACCAAACA-TCC 358 Query 391 GA-GGATTCCTAACATCCCGGGGCTTCCTAACATTCCGGGCCTACCTAACCTCCCGAGCA 449 | || |||||||||| ||||| || |||||| | || || | ||||||||||| || | Sbjct 359 CAGGGCTTCCTAACATTCCGGGCCTCCCTAACCTCCCAGGATTTCCTAACCTCCCTAG-A 417 Query 450 TTCCTAGAATCCCGGGACTTCCTCCTCTACCGTGGGT-CAAGTCAGAAGTTGTGTCGAAA 508 || | ||||||||||||||| ||||| |||| ||| || |||||||| |||||| Sbjct 418 ---CT----T-CCGGGACTTCCTCCTTTACCGCGGGTCCAA-TCGGAAGTTGTATCGAAA 468 Query 509 TCGGCTAAAGTGGAGAACTGCTTGACGAAAGATGGATCAAAGACCTCAAAGAAATCCTTT 568 ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| Sbjct 469 TCGGCTAAAGTGGAGAAGTGCTTGACGAAAGATGGATCAAAGACCTCAGAGAAATGCTTT 528 Query 569 TCAAAAATATTGTCTAGCTGGGAAAAGAAAGATTATTTCACATTAATGGACGAGGAATGC 628 ||| ||||||||||||||| || ||||||||| || || || | ||||| |||| ||| Sbjct 529 TCACAAATATTGTCTAGCTCGGCAAAGAAAGA-TA--TCGCA-T--TGGACAAGGAGTGC 582 Query 629 TGCGAGATCGTTGTGAATATGGACAAGAAGTGCAATAGCCACGTTCAAATGTTGTTCAAG 688 || ||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct 583 TGTGAGATTGTTGTGAATATGGACAAGAAATGCAATAGGCACGTTCACATGTTGTTCAAG 642 Query 689 AGCCCATTCTTTGTTCCTCTTCTTCGATACTCGTGTCACATCAAGCACACCAAAGACTAA 748 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 643 AGCCCATTCATTGTTCCTCTTCTTCGATACTCGTGTCACATCAAGCACACCAAAGTCTAA 702 Query 749 GCGAGTCCCTCCAATGGATA 768 |||||||||||||||||||| Sbjct 703 GCGAGTCCCTCCAATGGATA 722 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31947004446 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5