BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44318.1 Length=1221 Score E Sequences producing significant alignments: (Bits) Value Ahg314128 jgi|Araly1|314128|fgenesh1_pm.C_scaffold_1002908 1851 0.0 > Ahg314128 jgi|Araly1|314128|fgenesh1_pm.C_scaffold_1002908 Length=1221 Score = 1851 bits (1002), Expect = 0.0 Identities = 1152/1225 (94%), Gaps = 8/1225 (1%) Strand=Plus/Plus Query 1 ATGACGTCATCCATGTTTCGATCTCCTTGCAAGATTCCGTCGGTGAAAGGTTTTGAGCAA 60 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACGTCATCCATGTTTAGATCACCTTGCAAGATTCCGTCGGTGAAAGGTTTTGAGCAA 60 Query 61 AAGAGCTACGTAGGCCTTAAAGCAGCTTCGTATAACGTCAGAGTCAACTCTTTTAAAAGC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGAGCTACGTAGGCCTTAAAGCAGCTTCGTATAACGTCAGAGTCAACTCTTTTAAAAGC 120 Query 121 AGTGAAGTTGCTAGTCAACTCCAAAAGATCGACTCGACCTTGATATGGCCGGTAAATGCT 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGTGAAGTTGCTAGTCAACTGCAAAAGATCGACTCGACCTTGATATGGCCGGTAAATGCT 180 Query 181 CTCGAGGCGCCTCCAGTCCCGAGTAAACCAGCC-ACACCTCTGATTGATCAGCCTCTTCA 239 | ||||||||||||| | |||||||||| |||| | |||| ||||||| ||||||||||| Sbjct 181 CCCGAGGCGCCTCCATTGCCGAGTAAACTAGCCGA-ACCTGTGATTGACCAGCCTCTTCA 239 Query 240 GCTAAGCCGACGCGCACGTCGTAACCGAAAGTGCCCTACCCAGAGAGCTGCCTTCCAAGA 299 |||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||| Sbjct 240 GCTAAGCCGACGTGCACGTCGTAACCGAAAGTGCCCTTCCCAGAGAGCTGCTTTTCAAGA 299 Query 300 GACTAATATCTCTCCTGCAAATTTCATATACCCTCTCTTCATTCACGAAGGTGAGGTAGA 359 ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 300 GACTAATATCTCTCCAGCAAATTTAATATACCCCCTCTTCATTCACGAAGGTGAGGTAGA 359 Query 360 CATTCCCATAACATCGATGCCTGGACGTTACATGCTTGGCTGGAGACACGGCCTCATTGA 419 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 360 CATTCCGATAACAACGATGCCTGGACGTTACATGCTTGGCTGGAGACACGGCCTCAACGA 419 Query 420 AGAAGTTGCAAGGGCACTAGATGTTGGTGTGAATAGCGTAAAGTTGTATCCTAAAGTTCC 479 |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 420 AGAAGTTGCAAGAGCACGAGATGTTGGTGTGAATAGCATAAAGTTGTATCCTAAAGTTCC 479 Query 480 GGAAGCGTTAAA-GTCTCCAACAGGGGAAGAGGCATTTAACGACAACGGTCTAATACCTA 538 |||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 480 GGAAGC-TAAAAAGTCTCCAACAGGGGAAGAGGCATTTAACGACAACGGTCTAGTACCTC 538 Query 539 GGACAGTTCGTCTTCTCAAGGACAGATTCCCTGATCTTGTTATCTACACTGATGTCAACT 598 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 539 GGACAGTTCGTCTTCTCAAGGACAGGTTCCCTGATCTTGTTATCTACACTGATGTTAATT 598 Query 599 TTGATGAGTACTCAACAACTGGGCATGGTGGGATCGTAGGAGAAGATGGCGTGATATTAA 658 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | Sbjct 599 TTGATGAGTACTCAACAACTGGGCACGGTGGGATCGTAAGAGAAGATGGCGTGATATTGA 658 Query 659 ATGATGAAACAATTCACCAATTGCGGAAACAAGCAGTTTCTCAGGCCCGAGCTGGAGCAG 718 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 659 ATGATGAAACAATTCACCAATTGCGGAAACAAGCAGTTTCTCAGGCACGAGCTGGAGCAG 718 Query 719 ATGTTGTTTGTACGAGTGAGATGTTGGATGGTCGCGTAGGCGCGGTTCGTGCAGCTCTAG 778 ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 719 ATGTTGTATGTACGAGTGAGATGTTGGATGGTCGTGTAGGCGCGGTTCGAGCAGCTCTAG 778 Query 779 ATGCTGAGGGATTTCAAGATGTGTCCATTATGTCTTACTCTGTCAAGTATACAAGTTCAT 838 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ATGCTGAGGGCTTTCAACATGTGTCCATTATGTCTTACTCTGTCAAGTATACAAGTTCAT 838 Query 839 TATATGGCCGTTTTCGCAAAGTACAATTGGACAAGAAAACTTATCAGATAAACCCAGCAA 898 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 839 TATATGGCCGTTTTCGCAAAGTGGAATTGGACAAGAAAACTTATCAGATAAACCCGGCAA 898 Query 899 ATTCAAGAGAGGCATTGCTAGAAGCACGAGAAGACGAAGCGGAAGGAGCTGATATCTTAA 958 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| Sbjct 899 ATTCAAGAGAGGCATTGCTCGAAGCACGAGAAGACGAAGCTGAAGGAGCTGATATCCTAA 958 Query 959 TGGTGAAGCCAGCACTCCCATCTCTCGATATCATACGCTTATTGAAGAACCAAACT-TTG 1017 ||||||||||||| || | |||||||||||||||||||||||||||| |||||||| || Sbjct 959 TGGTGAAGCCAGCGCTGCTATCTCTCGATATCATACGCTTATTGAAGGACCAAACTCTT- 1017 Query 1018 TTGCCTATTGGAGCTTGCCAAGTTTCTGGTGAATACTCTATGATCAAAGCTGCTGGACTT 1077 || || ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct 1018 TTACCCATTGGAGCTTGTCAGGTTTCTGGTGAGTACTCCATGATCAAAGCTGCTGGACTT 1077 Query 1078 CTCAAGATGATCGATGAAGAAAAAGTTATGATGGAGTCATTGTTATGCATCCGCCGAGCT 1137 |||||||||||||| ||||||||||||||||||||||||||| | || || ||||||||| Sbjct 1078 CTCAAGATGATCGACGAAGAAAAAGTTATGATGGAGTCATTGATCTGTATGCGCCGAGCT 1137 Query 1138 GGTGCAGATCTCATTCTTACATACTTTGCTCTTCAAGCTGCTACAAAATTATGCGGCGAA 1197 ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1138 GGTGCAGATGTTATTCTTACATACTTTGCTCTTCAAGCTGCTACAATATTATGCGGCCAC 1197 Query 1198 AATAAACGATTTAGTT-CCAACTAG 1221 ||||||||||||| | |||||||| Sbjct 1198 AATAAACGATTTA-TAGCCAACTAG 1221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45595008732 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5