BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44350.1
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922904 jgi|Araly1|922904|scaffold_104185.1 2359 0.0
> Ahg922904 jgi|Araly1|922904|scaffold_104185.1
Length=1437
Score = 2359 bits (1277), Expect = 0.0
Identities = 1384/1437 (96%), Gaps = 2/1437 (0%)
Strand=Plus/Plus
Query 66 ACAGACAAGAACAC--AAAGTTATGGACAATCTCCGGAAACTTAAtcttctctctgtctc 123
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAAACAAGAACACAAAAAGTTATGGACAATCTCCGGAAACTTAATCTTCTCTCTGTCTC 60
Query 124 tctaaccataatctttgtctctctTACCATAGCCACCAACTTACCTTTCTTTGAAGTGAA 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCTAACCATAATCTTTGTCTCTCTTACAATAGCCACCAACTTACCTTTCTTTGAAGTGAA 120
Query 184 ATATCCCAACAACAACCCTTTTGGGATGTTACTACGGCCGACACCGATCAAGAACCAATC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 ATATCCCAACAACAACCCTTTTGGGATGTTACTACGGCCGACACCGATCAAGAACCAGTC 180
Query 244 CTTGGGTCTACCGGCTCATGTCGGGTCAGATGAGTGTCGGGTTTGGACCAAAGCATGTTC 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGGGTCTACCGGCTCAGGTCGGGTCAGATGAGTGTCGGGTTTGGACCAAAGCATGTTC 240
Query 304 TGATGAGATTCTTAGGCTGACTTATCAGCCGGATAACGTTGCGTGGCTTAAACGCGTTAG 363
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CGATGAGATTCTTAGGCTGACTTATCAGCCGGATAACGTGGCGTGGCTTAAACGCGTTAG 300
Query 364 GAGGACGATCCATGAGAACCCGGAGCTAGCGTTTGAGGAGTATGAGACTAGTAGGCTTAT 423
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 301 GAGGACGATCCATGAGAACCCGGAGCTAGCGTTTGAGGAGTATGAGACGAGTAGGCTTGT 360
Query 424 TAGGTCGGAGCTGGACCGTATGGGTATCATGTATAGATATCCGTTAGCGAAAACGGGTAT 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAGGTCGGAGCTAGACCGTATGGGTATCATGTATAGATATCCGTTAGCGAAAACGGGTAT 420
Query 484 TCGGGCTTGGATCGGATCCGGTGGACCGCCTTTTGTTGCGGTTCGGGCTGATATGGACGC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGGCTTGGATCGGATCCGGTGGACCGCCTTTTGTTGCGGTTCGGGCTGATATGGACGC 480
Query 544 ACTACCTATTCAGGAAGCAGTTGAATGGGAACATATAAGCAAAGTTGCAGGCAAAATGCA 603
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 481 ACTACCTATTCAGGAAGCAGTTGAATGGGAACACAAAAGCAAAGTTGCAGGCAAAATGCA 540
Query 604 TGCATGTGGTCATGACGCACATGTGACTATGCTTCTTGGTGCTGCCCATATTCTTAAGGC 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 TGCATGTGGTCATGACGCACATGTGACTATGCTTCTTGGTGCTGCCCATATTCTTAAGTC 600
Query 664 TCGTGAACATCTTCTCAAGGGAACAGTGGTTCTGTTATTCCAACCGGCTGAAGAAGCTGG 723
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 601 TCGTGAACATCTTCTCAAGGGAACAGTGGTTCTCTTATTCCAGCCGGCCGAAGAAGCTGG 660
Query 724 AAATGGTGCAAAGAATATGATCGAAGACGGAGCTTTGGATGACGTGGAGGCTATCTTCGC 783
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATGGTGCGAAGAATATGATTGAAGACGGAGCTTTGGATGACGTGGAGGCTATCTTCGC 720
Query 784 GGTCCATGTGTCCCATATCCATCCAACGGGTGTGATTGGATCAAGAAGTGGTCCTTTGCT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTCCATGTGTCCCATATCCATCCAACGGGTGTGATTGGATCAAGAAGTGGTCCTTTGCT 780
Query 844 CGCGGGATGTGGAATTTTCCGGGCGGTTATCACTTCGGAAGATAGCCGTGGCGCCGCTAA 903
||| |||||||||||||||||||| ||||||||| | |||||||| ||||||| |||||
Sbjct 781 CGCCGGATGTGGAATTTTCCGGGCCGTTATCACTGCCGAAGATAGTGGTGGCGCTGCTAA 840
Query 904 TCTCCTTCTTGCAGCTTCTTCCGCGGTCATTAGTCTTCAAGGCATTGTATCCCGTGAAGC 963
||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 841 TCTTCTTCTTGCAGCTTCTTCCGCTGTCATTAGCCTTCAAGGAATTGTATCCCGTGAAGC 900
Query 964 TAGTCCTCTTGACTCTCAGGTTGTGTCGGTTACTTCATTTGATGGCGGTCATAGTCTCGA 1023
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 TAGTCCTCTTGACTCTCAGGTTGTATCGGTTACTTCATTTGATGGCGGTCATAGTCTCGA 960
Query 1024 TGTGGCGCCGGACACGGTGGTCCTCGGTGGTACTTTCAGAGCTTTTTCTAACTCAAGCTT 1083
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 961 TGTGGCGCCGGAAACGGTGGTCCTCGGTGGTACATTCAGAGCTTTTTCTAATTCAAGCTT 1020
Query 1084 CTACTACCTCAAGAAACGTATTCAAGAGGTACTCATGGATCAGGTCGGGGTTTTCGGTTG 1143
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1021 CTATTACCTCAAGAAGCGTATTCAAGAGGTACTCATGGATCAGGTAGGGGTTTTTGGTTG 1080
Query 1144 CCAAGCGACAGTGAACTTCTTTGAGAAGCAGAATGCGATATACCCGCCAACTACGAACAA 1203
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1081 CCAAGCGACAGTGAACTTCTTTGAGAAGCAGAATGCGATCTACCCGCCAACTACGAACAA 1140
Query 1204 TGATGCAACATACAATCACTTGAAGAAAGTCACCATAGATTTGCTCGGAGATAGCCATTT 1263
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1141 CGATGCAACATACAATCACTTGAAGAAAGTCACCGTAGATTTACTCGGAGATAGCCACTT 1200
Query 1264 CACCTTGGCTCCACAGATGATGGGAGCCGAAGATTTCGCCTTCTACTCAGAAATCATCCC 1323
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 CACCTTGGCTCCACAGATGATGGGAGCCGAAGATTTCGCCTTCTACTCAGAGATCATCCC 1260
Query 1324 AGCCGCTTTCTACTTCATTGGCATAAGAAATGAAGAACTCGGATCAGTCCACATTGCTCA 1383
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1261 GGCCGCATTCTACTTCATTGGCATAAGAAATGAAGAACTTGGATCAGTCCACATTGGTCA 1320
Query 1384 TTCACCACATTTCATGATCGATGAAGATAGTTTACCCGTTGGAGCCGCGGTTCATGCCGC 1443
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1321 TTCACCACATTTCATGATCGATGAAGATAGTTTACCCGTTGGAGCCGCCGTTCATGCCGC 1380
Query 1444 CGTGGCTGAGAGATACTTAAATGATAAACATTCATAAGAGTAAAAACAATCTCCCCG 1500
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1381 CGTGGCTGAGAGATACTTAAATGATAAACATTCATAAGAACAAAGACAATCTTCCCG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75913858285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5