BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44414.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922906 jgi|Araly1|922906|scaffold_104187.1 460 2e-129
> Ahg922906 jgi|Araly1|922906|scaffold_104187.1
Length=348
Score = 460 bits (249), Expect = 2e-129
Identities = 288/307 (94%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTTCTTCTTCGTCGGTGGATTAGGGCAACAAGTGAGACAAGTCCTAAAATCCGGC 60
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 21 ATGTTCTTCTTCTTCGTCGGTGGAGTAGGACAACAAGTGAGACAAGTCCTAAAATCCGGC 80
Query 61 GCCGGAACATGCATAAGATGCGGTTCTCAAGCCGATTTGGTCGAGTACGACAAAGTCATA 120
|||||||| |||||||||||||| ||| |||||||||| ||||| |||||||||||| |
Sbjct 81 GCCGGAACTTGCATAAGATGCGGCTCTGAAGCCGATTTAGTCGATTACGACAAAGTCTTG 140
Query 121 AAGCTCTTCTTCGTTCCTGTCTGGAGATGGCCTGGAAAAGATCCTCTACTTCATTGTAGA 180
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 141 AAGCTCTTCTTTGTTCCTGTCTGGAGATGGCCTGGAAAAAATCCTCTACTTCATTGTAGA 200
Query 181 GACTGTGATCTGTTCTTCCCTCAGTCTCTGTCACCGCCTCCAGTTTCT-TTAGCTACGTG 239
|||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 201 GACTGTGATCTGTTTTTCCCTCAGTCTCTGTCACCGCCACCAGTTTCTCTT-GCTACGTG 259
Query 240 TCGATTCTGTGATCGTGTTGTTGAGCCTGAGTTCCGTTTTTGCCCTTTTTGTGGCTCTTC 299
||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 260 TCGGTTCTGTGATCGTGTCGTTGAGCCTGAGTTTCGTTTTTGCCCTTTTTGTGGTTCTTC 319
Query 300 TCTGTGA 306
|||||||
Sbjct 320 TCTGTGA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5