BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44542.1 Length=1023 Score E Sequences producing significant alignments: (Bits) Value Ahg314132 jgi|Araly1|314132|fgenesh1_pm.C_scaffold_1002912 1197 0.0 Ahg952033 jgi|Araly1|952033|scaffold_31000001.1 760 0.0 Ahg328326 jgi|Araly1|328326|fgenesh1_pm.C_scaffold_7000553 704 0.0 > Ahg314132 jgi|Araly1|314132|fgenesh1_pm.C_scaffold_1002912 Length=816 Score = 1197 bits (648), Expect = 0.0 Identities = 768/824 (93%), Gaps = 16/824 (2%) Strand=Plus/Plus Query 33 ATGTACCATCTCCTTATCATTATCACTACACTCTCCTTCTCTTCAATTAACATAACCTTC 92 |||||||||||||| |||||| |||||| ||||||||||||||||||| ||| ||||| Sbjct 1 ATGTACCATCTCCTCATCATTGTCACTATACTCTCCTTCTCTTCAATTCCCATCGCCTTC 60 Query 93 GCCGTCGATGAAGCTTTCCCTTCAATTCCCACTACCTTCAGCGTCGCAACGAAACAACAC 152 |||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||| Sbjct 61 GCCGTCGATGAAGCTTTCCCTTCAGGTCCAACTACCTTCAGCGTCGCAACG--A-AACAC 117 Query 153 TACGACG-T-AAAA-CCAATCCACC-ATGAAGTTTATGACGGAGAAAGGAAGATATACGA 208 | ||||| | |||| ||||||| || | |||||||||| ||||||||||||||||| ||| Sbjct 118 TCCGACGATCAAAAGCCAATCCGCCGA-GAAGTTTATGGCGGAGAAAGGAAGATATTCGA 176 Query 209 CATCAGCCACCAGTACACGCCGGAGTTGCCGGTTTGGGAGTCTTCAGAAGGACTAGGGAA 268 |||||||||||||||||| || ||| |||| ||||||||||||||||||||| || |||| Sbjct 177 CATCAGCCACCAGTACACACCAGAGCTGCCAGTTTGGGAGTCTTCAGAAGGATTA-GGAA 235 Query 269 -CTTTCTTAGACTTGCCGTGAGTATGAAGAATGGATCCGAT-GCTAATATCTCGAAGATG 326 ||| | |||||||||||||| |||||||||||||||| | |||||||||||||||||| Sbjct 236 GGTTTATGAGACTTGCCGTGAGCATGAAGAATGGATCCG-TCGCTAATATCTCGAAGATG 294 Query 327 GAACTATCTGTTCACTCTGGAACTCATGTTGATGCACCAGGCCATTTCCATGACCATTAT 386 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 295 AAACTATCTGTTCACTCTGGAACTCATGTTGATGCTCCAGGCCATTTCCATGAACATTAT 354 Query 387 TATGAGTCTGGTTTTGATACTGATTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTA 446 ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 355 TATGATTCTGGTTTTGATTCTGATTCACTTGATCTTCAAATCCTTAACGGTCCTGCTTTA 414 Query 447 TTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTACATATT 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 415 TTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTTCATATT 474 Query 507 CCAAGAGGG-ATCCGTCGTGTTCTCTTTAAAACATTGAACACTGATAGGAGGCTTATGTT 565 |||| |||| ||||||||||| ||||||||||| |||||||| |||||| |||||||||| Sbjct 475 CCAA-AGGGAATCCGTCGTGTGCTCTTTAAAACTTTGAACACGGATAGGCGGCTTATGTT 533 Query 566 TAAGAAAGAATTTGATTCAAGCTTTGTCGGGTT-TATGGTCGATGGGGCGAAATGGTTGG 624 ||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||| Sbjct 534 TAAGAAAGAATTTGATTCAAGCTTTGTTGGGTTCT-TGATCGATGGGGCGAAATGGTTGG 592 Query 625 TTGAAAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATG 684 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 TTGAGAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATG 652 Query 685 AAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGC 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 AAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGC 712 Query 745 TGAAGCTGGATGACGTGGAGGTAGGAATGTACACGCTTCATTGCTTACCGTTAAGATTGG 804 ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 713 TGAAGCTGGATGATGTGGAGGTAGGAATGTACTCGCTTCATTGCTTACCGTTGAGATTGG 772 Query 805 TTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 848 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 TTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 816 > Ahg952033 jgi|Araly1|952033|scaffold_31000001.1 Length=821 Score = 760 bits (411), Expect = 0.0 Identities = 619/717 (86%), Gaps = 24/717 (3%) Strand=Plus/Plus Query 162 AAACCAATCCACCATGAAGTTTATGACGGAGAAAGGAAGATATACGACATCAGCCACCAG 221 |||||||||| || ||| |||||||| |||| | |||||||||||||||||||||| | Sbjct 114 AAACCAATCCGCCGTGAGGTTTATGAAGGAG---GTAAGATATACGACATCAGCCACC-G 169 Query 222 -TACACGCCGGAG-TTGCCGGTTTGGGAGTCTTCAGAAGGACTAGGG--A-ACTTTCTT- 275 |||||||||||| || || | |||||| ||||| || ||| | ||| | || ||||| Sbjct 170 TTACACGCCGGAGATT-CCAGCTTGGGAATCTTCGGAGGGA-TTGGGAAAGACGTTCTTG 227 Query 276 AGACTT-GCCGTGAGTATGAAGAATGGATCCGA-T-GCTAATATCTCGAAGATGGAACTA 332 || || |||| ||||||||||||||||| | | | ||||| | ||| ||||| ||||| Sbjct 228 CGA-TTAGCCGCGAGTATGAAGAATGGAT-C-ATTCGCTAACGTATCGGAGATGAAACTA 284 Query 333 TCTGTTCACTCTGGAACTCATGTTGATGCACCAGGCCATTTCCATGACCATTATTATGA- 391 |||||||||||||||||||| || ||||| ||||| || ||| ||| ||||||| || Sbjct 285 TCTGTTCACTCTGGAACTCACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGAC 344 Query 392 GTCTGGTTTTGATACTGATTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTATTGGT 451 | ||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||| Sbjct 345 G-CTGGTTTTGATACTGATTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGT 403 Query 452 TGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTACATATTCCAAG 511 ||||||||||||||||||||||||| | |||||||| ||| |||| || ||||||| ||| Sbjct 404 TGATGTTCCAAGAGATAAGAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAG 463 Query 512 AGGGA-TCCGTCGTGTTCTCTTTAAAACATTGAACACTGATAGGAGGCTTATGTTTAAGA 570 | ||| | |||||||| ||||||| ||||| |||||||| | | ||||||||||||||| Sbjct 464 A-GGAGTTCGTCGTGTGCTCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGA 522 Query 571 AAGAATTTGATTCAAGCTTTGTC-GGGTTTATGGTCGATGGGGCGAAATGGTTGGTTGAA 629 |||| |||||||||||||||| | ||||| ||| |||||||||||||||||||||||| Sbjct 523 AAGAGTTTGATTCAAGCTTTG-CTGGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAG 581 Query 630 AATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATGAAGCA 689 || ||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||| || Sbjct 582 AACACAGACATCAAACTTATTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCA 641 Query 690 CCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGCTGAAG 749 ||||| || || ||| |||||||| || ||||||||||||||||||| |||||||||||| Sbjct 642 CCTGCAACACACAGGGTTATACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAG 701 Query 750 CTGGATGACGTGGAGGTAGGAATGTACACGCTTCATTGCTTACCGTTAAGATTGGTTGGA 809 ||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| Sbjct 702 CTGGATGGTGTGGAGGTAGGAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGA 761 Query 810 GCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 866 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 762 GCGGAAGGAGCACCGACAAGATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 818 > Ahg328326 jgi|Araly1|328326|fgenesh1_pm.C_scaffold_7000553 Length=741 Score = 704 bits (381), Expect = 0.0 Identities = 585/681 (86%), Gaps = 24/681 (4%) Strand=Plus/Plus Query 180 GTTTATGACGGAGAAAGGAAGATATACGACATCAGCCACCAG-TACACGCCGGAG-TTGC 237 |||||||| |||| | ||||||||||| |||||||||| | |||||||||||| || | Sbjct 73 GTTTATGAAGGAG---GTAAGATATACGATATCAGCCACC-GTTACACGCCGGAGATT-C 127 Query 238 CGGTTTGGGAGTCTTCAGAAGGACTAGGG--A-ACTTTCTT-AGACTT-GCCGTGAGTAT 292 | | |||||| ||||| || ||| | ||| | || ||||| || || |||| |||||| Sbjct 128 CAGCTTGGGAATCTTCGGAGGGA-TTGGGAAAGACGTTCTTGCGA-TTAGCCGCGAGTAT 185 Query 293 GAAGAATGGATCCGA-T-GCTAATATCTCGAAGATGGAACTATCTGTTCACTCTGGAACT 350 ||||||||||| | | | ||||| | ||| ||||| ||||||||||||||||||||||| Sbjct 186 GAAGAATGGAT-C-ATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACT 243 Query 351 CATGTTGATGCACCAGGCCATTTCCATGACCATTATTATGA-GTCTGGTTTTGATACTGA 409 || || ||||| ||||| || ||| ||| ||||||| || | |||||||||||||||| Sbjct 244 CACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGACG-CTGGTTTTGATACTGA 302 Query 410 TTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTATTGGTTGATGTTCCAAGAGATAA 469 ||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct 303 TTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATAA 362 Query 470 GAACATTTCAGCTGAGGTTATGAAATCACTACATATTCCAAGAGG-GATCCGTCGTGTTC 528 ||||||| | |||||||| ||| |||| || ||||||| |||||| | || ||||||| | Sbjct 363 GAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAGAGGAGTTC-GTCGTGTGC 421 Query 529 TCTTTAAAACATTGAACACTGATAGGAGGCTTATGTTTAAGAAAGAATTTGATTCAAGCT 588 |||||| ||||| |||||||| | | ||||||||||||||||||| ||||||||||||| Sbjct 422 TCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 481 Query 589 TTG-TCGGGTTTATGGTCGATGGGGCGAAATGGTTGGTTGAAAATACAGACATCAAACTT 647 ||| | ||||| ||| |||||||||||||||||||||||| || ||||||||||||||| Sbjct 482 TTGCT-GGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTT 540 Query 648 GTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATGAAGCACCTGCGACGCATAGGTTT 707 ||||||||||||||||||| |||||||||| ||| ||| ||||||| || || ||| || Sbjct 541 ATTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTT 600 Query 708 ATACTTGAACGACGGGATATAATCCCTGTCGAAGCGCTGAAGCTGGATGACGTGGAGGTA 767 |||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 601 ATACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTA 660 Query 768 GGAATGTACACGCTTCATTGCTTACCGTTAAGATTGGTTGGAGCGGAAGGAGCACCAACG 827 |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 661 GGAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACA 720 Query 828 AGATGCATTCTCATCAAGTGA 848 ||||||||||||||||||||| Sbjct 721 AGATGCATTCTCATCAAGTGA 741 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38046671166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5