BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44542.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314132 jgi|Araly1|314132|fgenesh1_pm.C_scaffold_1002912 1197 0.0
Ahg952033 jgi|Araly1|952033|scaffold_31000001.1 760 0.0
Ahg328326 jgi|Araly1|328326|fgenesh1_pm.C_scaffold_7000553 704 0.0
> Ahg314132 jgi|Araly1|314132|fgenesh1_pm.C_scaffold_1002912
Length=816
Score = 1197 bits (648), Expect = 0.0
Identities = 768/824 (93%), Gaps = 16/824 (2%)
Strand=Plus/Plus
Query 33 ATGTACCATCTCCTTATCATTATCACTACACTCTCCTTCTCTTCAATTAACATAACCTTC 92
|||||||||||||| |||||| |||||| ||||||||||||||||||| ||| |||||
Sbjct 1 ATGTACCATCTCCTCATCATTGTCACTATACTCTCCTTCTCTTCAATTCCCATCGCCTTC 60
Query 93 GCCGTCGATGAAGCTTTCCCTTCAATTCCCACTACCTTCAGCGTCGCAACGAAACAACAC 152
|||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||
Sbjct 61 GCCGTCGATGAAGCTTTCCCTTCAGGTCCAACTACCTTCAGCGTCGCAACG--A-AACAC 117
Query 153 TACGACG-T-AAAA-CCAATCCACC-ATGAAGTTTATGACGGAGAAAGGAAGATATACGA 208
| ||||| | |||| ||||||| || | |||||||||| ||||||||||||||||| |||
Sbjct 118 TCCGACGATCAAAAGCCAATCCGCCGA-GAAGTTTATGGCGGAGAAAGGAAGATATTCGA 176
Query 209 CATCAGCCACCAGTACACGCCGGAGTTGCCGGTTTGGGAGTCTTCAGAAGGACTAGGGAA 268
|||||||||||||||||| || ||| |||| ||||||||||||||||||||| || ||||
Sbjct 177 CATCAGCCACCAGTACACACCAGAGCTGCCAGTTTGGGAGTCTTCAGAAGGATTA-GGAA 235
Query 269 -CTTTCTTAGACTTGCCGTGAGTATGAAGAATGGATCCGAT-GCTAATATCTCGAAGATG 326
||| | |||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 236 GGTTTATGAGACTTGCCGTGAGCATGAAGAATGGATCCG-TCGCTAATATCTCGAAGATG 294
Query 327 GAACTATCTGTTCACTCTGGAACTCATGTTGATGCACCAGGCCATTTCCATGACCATTAT 386
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 295 AAACTATCTGTTCACTCTGGAACTCATGTTGATGCTCCAGGCCATTTCCATGAACATTAT 354
Query 387 TATGAGTCTGGTTTTGATACTGATTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTA 446
||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 355 TATGATTCTGGTTTTGATTCTGATTCACTTGATCTTCAAATCCTTAACGGTCCTGCTTTA 414
Query 447 TTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTACATATT 506
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 TTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTTCATATT 474
Query 507 CCAAGAGGG-ATCCGTCGTGTTCTCTTTAAAACATTGAACACTGATAGGAGGCTTATGTT 565
|||| |||| ||||||||||| ||||||||||| |||||||| |||||| ||||||||||
Sbjct 475 CCAA-AGGGAATCCGTCGTGTGCTCTTTAAAACTTTGAACACGGATAGGCGGCTTATGTT 533
Query 566 TAAGAAAGAATTTGATTCAAGCTTTGTCGGGTT-TATGGTCGATGGGGCGAAATGGTTGG 624
||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||
Sbjct 534 TAAGAAAGAATTTGATTCAAGCTTTGTTGGGTTCT-TGATCGATGGGGCGAAATGGTTGG 592
Query 625 TTGAAAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATG 684
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGAGAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATG 652
Query 685 AAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGC 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGC 712
Query 745 TGAAGCTGGATGACGTGGAGGTAGGAATGTACACGCTTCATTGCTTACCGTTAAGATTGG 804
||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 713 TGAAGCTGGATGATGTGGAGGTAGGAATGTACTCGCTTCATTGCTTACCGTTGAGATTGG 772
Query 805 TTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 848
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 816
> Ahg952033 jgi|Araly1|952033|scaffold_31000001.1
Length=821
Score = 760 bits (411), Expect = 0.0
Identities = 619/717 (86%), Gaps = 24/717 (3%)
Strand=Plus/Plus
Query 162 AAACCAATCCACCATGAAGTTTATGACGGAGAAAGGAAGATATACGACATCAGCCACCAG 221
|||||||||| || ||| |||||||| |||| | |||||||||||||||||||||| |
Sbjct 114 AAACCAATCCGCCGTGAGGTTTATGAAGGAG---GTAAGATATACGACATCAGCCACC-G 169
Query 222 -TACACGCCGGAG-TTGCCGGTTTGGGAGTCTTCAGAAGGACTAGGG--A-ACTTTCTT- 275
|||||||||||| || || | |||||| ||||| || ||| | ||| | || |||||
Sbjct 170 TTACACGCCGGAGATT-CCAGCTTGGGAATCTTCGGAGGGA-TTGGGAAAGACGTTCTTG 227
Query 276 AGACTT-GCCGTGAGTATGAAGAATGGATCCGA-T-GCTAATATCTCGAAGATGGAACTA 332
|| || |||| ||||||||||||||||| | | | ||||| | ||| ||||| |||||
Sbjct 228 CGA-TTAGCCGCGAGTATGAAGAATGGAT-C-ATTCGCTAACGTATCGGAGATGAAACTA 284
Query 333 TCTGTTCACTCTGGAACTCATGTTGATGCACCAGGCCATTTCCATGACCATTATTATGA- 391
|||||||||||||||||||| || ||||| ||||| || ||| ||| ||||||| ||
Sbjct 285 TCTGTTCACTCTGGAACTCACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGAC 344
Query 392 GTCTGGTTTTGATACTGATTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTATTGGT 451
| ||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||
Sbjct 345 G-CTGGTTTTGATACTGATTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGT 403
Query 452 TGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTACATATTCCAAG 511
||||||||||||||||||||||||| | |||||||| ||| |||| || ||||||| |||
Sbjct 404 TGATGTTCCAAGAGATAAGAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAG 463
Query 512 AGGGA-TCCGTCGTGTTCTCTTTAAAACATTGAACACTGATAGGAGGCTTATGTTTAAGA 570
| ||| | |||||||| ||||||| ||||| |||||||| | | |||||||||||||||
Sbjct 464 A-GGAGTTCGTCGTGTGCTCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGA 522
Query 571 AAGAATTTGATTCAAGCTTTGTC-GGGTTTATGGTCGATGGGGCGAAATGGTTGGTTGAA 629
|||| |||||||||||||||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 523 AAGAGTTTGATTCAAGCTTTG-CTGGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAG 581
Query 630 AATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATGAAGCA 689
|| ||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||| ||
Sbjct 582 AACACAGACATCAAACTTATTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCA 641
Query 690 CCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGCTGAAG 749
||||| || || ||| |||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 642 CCTGCAACACACAGGGTTATACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAG 701
Query 750 CTGGATGACGTGGAGGTAGGAATGTACACGCTTCATTGCTTACCGTTAAGATTGGTTGGA 809
||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 702 CTGGATGGTGTGGAGGTAGGAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGA 761
Query 810 GCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 866
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 762 GCGGAAGGAGCACCGACAAGATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 818
> Ahg328326 jgi|Araly1|328326|fgenesh1_pm.C_scaffold_7000553
Length=741
Score = 704 bits (381), Expect = 0.0
Identities = 585/681 (86%), Gaps = 24/681 (4%)
Strand=Plus/Plus
Query 180 GTTTATGACGGAGAAAGGAAGATATACGACATCAGCCACCAG-TACACGCCGGAG-TTGC 237
|||||||| |||| | ||||||||||| |||||||||| | |||||||||||| || |
Sbjct 73 GTTTATGAAGGAG---GTAAGATATACGATATCAGCCACC-GTTACACGCCGGAGATT-C 127
Query 238 CGGTTTGGGAGTCTTCAGAAGGACTAGGG--A-ACTTTCTT-AGACTT-GCCGTGAGTAT 292
| | |||||| ||||| || ||| | ||| | || ||||| || || |||| ||||||
Sbjct 128 CAGCTTGGGAATCTTCGGAGGGA-TTGGGAAAGACGTTCTTGCGA-TTAGCCGCGAGTAT 185
Query 293 GAAGAATGGATCCGA-T-GCTAATATCTCGAAGATGGAACTATCTGTTCACTCTGGAACT 350
||||||||||| | | | ||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 186 GAAGAATGGAT-C-ATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACT 243
Query 351 CATGTTGATGCACCAGGCCATTTCCATGACCATTATTATGA-GTCTGGTTTTGATACTGA 409
|| || ||||| ||||| || ||| ||| ||||||| || | ||||||||||||||||
Sbjct 244 CACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGACG-CTGGTTTTGATACTGA 302
Query 410 TTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTATTGGTTGATGTTCCAAGAGATAA 469
||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 303 TTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATAA 362
Query 470 GAACATTTCAGCTGAGGTTATGAAATCACTACATATTCCAAGAGG-GATCCGTCGTGTTC 528
||||||| | |||||||| ||| |||| || ||||||| |||||| | || ||||||| |
Sbjct 363 GAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAGAGGAGTTC-GTCGTGTGC 421
Query 529 TCTTTAAAACATTGAACACTGATAGGAGGCTTATGTTTAAGAAAGAATTTGATTCAAGCT 588
|||||| ||||| |||||||| | | ||||||||||||||||||| |||||||||||||
Sbjct 422 TCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 481
Query 589 TTG-TCGGGTTTATGGTCGATGGGGCGAAATGGTTGGTTGAAAATACAGACATCAAACTT 647
||| | ||||| ||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct 482 TTGCT-GGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTT 540
Query 648 GTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATGAAGCACCTGCGACGCATAGGTTT 707
||||||||||||||||||| |||||||||| ||| ||| ||||||| || || ||| ||
Sbjct 541 ATTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTT 600
Query 708 ATACTTGAACGACGGGATATAATCCCTGTCGAAGCGCTGAAGCTGGATGACGTGGAGGTA 767
|||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 ATACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTA 660
Query 768 GGAATGTACACGCTTCATTGCTTACCGTTAAGATTGGTTGGAGCGGAAGGAGCACCAACG 827
|||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 661 GGAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACA 720
Query 828 AGATGCATTCTCATCAAGTGA 848
|||||||||||||||||||||
Sbjct 721 AGATGCATTCTCATCAAGTGA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5