BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44608.1
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336782 jgi|Araly1|336782|fgenesh1_pg.C_scaffold_1003347 616 9e-176
> Ahg336782 jgi|Araly1|336782|fgenesh1_pg.C_scaffold_1003347
Length=588
Score = 616 bits (333), Expect = 9e-176
Identities = 518/599 (86%), Gaps = 46/599 (8%)
Strand=Plus/Plus
Query 1 ATGAAAGGACAGAACAAAAGCTCAACATCTTCTTGTAACATCCATCCAGTAGATG-TTAT 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 1 ATGAAAGGACAGAACAAAAGCTCAACATCTTCTTGCAACATCCATCCAGTAGA-GTTTAT 59
Query 60 TGAAGGTGTGTGTCCTCTCTGTCTTAACGAGAGGCTTTTGGTCGTGGCTTCTCTACAGAG 119
||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 60 TGAAGGTATATGTCCTCTCTGTCTTAACGAGAGGCTTCTGGTCCTGGCTTCTCTACAGAG 119
Query 120 ATTACGCCCTCCATGTCCTCCTTCTTCCTACCAAACCAT-C-----CCGAAAACCATCCT 173
| ||||||||||| | ||||| |||||||||||||||| | || |||||||||||
Sbjct 120 ACTACGCCCTCCA--T-CTCCTCCTTCCTACCAAACCATCCAAGAACCAAAAACCATCCT 176
Query 174 TCAAAATTCTTCTAGAAAGAAACCCATCAGACTCTTCTCCTTCTTTAGCTTCTTCGAACT 233
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 177 TCAAAATTCTTCTAGAAAGAAACCCATCAGAATCTTCTCCTTCCTTAGTTTCTTCGAACT 236
Query 234 CCGACATCACAAGTCCGATCACCAGAACACCTCCATTATCAGTCCAGAAGATTCATTCAT 293
||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct 237 CCGACATCACAAGTCTGATCACAAAAACACCTCCATTATCAGTCCAGAAGATTCATTCAT 296
Query 294 TTCGATCAACTTCGAAGACAACCGAGCAACTTCATGGGAGAAAGGAAAAGAAA-----C- 347
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 297 TTCGATCAACTTCGAAGACAACAGAGCAACTTCATGGGAGAAAGGAAAAGAAAGTTTTCA 356
Query 348 GC----A----AT----A-T-C-AACATGTC---C---ACACGAAGAAGGAGTTTGTTCC 386
|| | || | | | |||||||| | |||||||||||||| || ||||
Sbjct 357 GCCTTCATGGGATCGTCAATACCAACATGTCATGCTCCACACGAAGAAGGAGATTATTCC 416
Query 387 TCAGTCCACACCACTTCCTCCTCTACTGTCGTGGAGAAAACGGATTCGTAGACTCTTACA 446
|||| ||| |||| ||||| | || | | | || |||||||||||| | ||||||||
Sbjct 417 TCAGCCCATGCCACGTCCTC-TA-ACA-T-G-G-AGGAAACGGATTCGTCGGCTCTTACA 470
Query 447 CGTCATCAGTTTCAAAAGCCGGTCTAGAGCATGTCACTTGTCCGCCAAGGTTAAAAGTGA 506
||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||| ||||
Sbjct 471 CGTCATCAGTTTCAAGAGCCGGTCTCGAGCATGCCACTTGTCCGCCAAAGTTAAAGGTGA 530
Query 507 AGATGACTTGAGTAGAAGTTGGTGAAGGCCTTTGTCCCCCACTTAACA-GAAACTCTAA 564
||||||||||||||||||||||| |||||||||||||| || |||| ||||||||||
Sbjct 531 AGATGACTTGAGTAGAAGTTGGTTAAGGCCTTTGTCCCAGACC-AACAAGAAACTCTAA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24246175212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5