BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44750.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473816 jgi|Araly1|473816|fgenesh2_kg.1__3770__AT1G44750.3 1903 0.0
> Ahg473816 jgi|Araly1|473816|fgenesh2_kg.1__3770__AT1G44750.3
Length=1388
Score = 1903 bits (1030), Expect = 0.0
Identities = 1155/1216 (95%), Gaps = 6/1216 (0%)
Strand=Plus/Plus
Query 90 CAGGTAATCAAGAACCAATCTTGGTGAAAGAAGAGAGTGTGGTTGGTATACCAACACCAC 149
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 174 CAGGTAATCAAGAACCAATCTTGGTGAAAGAAGAGAGTGTGGTAGGTATACCAACACCAC 233
Query 150 TCTTGAAGCTTAAAAGTTGGCAATGGTGGGTTCTTGTATCCGTTAACATCTTTTTCCTTA 209
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 234 TCTTGAAGCTTAAAAGTTGGCAATGGTGGGTTCTTGTGTCTATTAACATCTTTTTCCTTA 293
Query 210 TTGGTGGTCAAGCTGCTTCGGTTCTTCTTGGTAGGTTTTACTATGATGAAGGTGGAAACA 269
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 294 TTGGTGGTCAAGCTGCTTCGGTTCTTCTTGGTCGGTTTTACTATGATCAAGGTGGAAACA 353
Query 270 GTAAATGGATGGCAACTCTTGTTCAAACGGCTGCTTTTCCTATACTCTATATCCCGCTTT 329
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 354 GTAAATGGATGGCTACTCTTGTTCAAACCGCTGCTTTTCCTATCCTCTATATCCCGCTTT 413
Query 330 TGCTACTTCCG---TCTTCG-GCTAGTGTAGAGTCTTCGGAGAGTTCGTGTTCACTCAAG 385
||||||||||| |||||| | ||||| |||||||| |||| ||| ||||||||||||
Sbjct 414 TGCTACTTCCGTCTTCTTCGAG-TAGTGCCGAGTCTTCAGAGACTTCTTGTTCACTCAAG 472
Query 386 TACATTGTTTTGATCTATGTTTTGCTCGGTGTGATCATTGCTGGAGATAATATGTTATAC 445
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 473 TACATTGTTTTGATCTATGTTTTGCTCGGTGTGATCATTGCTGGTGACAACATGTTGTAC 532
Query 446 TCTGTTGGACTTTTGTACCTCTCTGCATCGACGTATTCGCTCATTTGCGCTACTCAGTTA 505
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 533 TCTGTTGGACTTTTGTACCTCTCTGCTTCGACTTATTCGCTCATTTGCGCTACTCAGTTA 592
Query 506 GCTTTCAACGCGGTGTTCTCTTATTTCATCAATGCTCAGAAGTTCACTGCTTTGATTCTC 565
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 593 GCTTTCAACGCGGTGTTCTCTTATTTCATCAACGCTCAGAAGTTCACTGCTTTGATTCTC 652
Query 566 AACTCCGTTGTTCTCTTGTCGTTCTCCGCTGCTTTGATAGCTCTCAATGATGATGCGGAT 625
||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||| |||
Sbjct 653 AACTCTGTTGTTCTCCTGTCGTTTTCCGCTGCTTTGATTGCCCTCAATGATGATGCAGAT 712
Query 626 ACTCCTTCTGGTGTCTCCAGGTCTAAGTATATTGTTGGGTTTGTGTGTACACTTGCTGCG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ACTCCTTCTGGTGTCTCCAGGTCTAAGTATATTGTTGGGTTTGTGTGTACACTTGCTGCG 772
Query 686 TCTGCTCTCTATTCTCTGTTGCTATCTCTTATGCAGTTCTCGTTCGAGAAGATTCTGAAG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCTGCTCTCTATTCTCTGTTGCTATCTCTTATGCAGTTCTCGTTCGAGAAGATTCTGAAG 832
Query 746 AGGGAGACGTTTTCTGTGGTTCTTGAAATGCAAATCTACACTTCTTTAGTGGCGACTTGT 805
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AGGGAGACATTTTCTGTGGTTCTTGAAATGCAAATCTACACTTCTTTAGTGGCGACTTGT 892
Query 806 GTTTCGGTTATAGGGCTTTTTGCTAGCGGGGAATGGAGAACGCTGCATGGGGAAATGGAA 865
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 GTCTCGGTTATTGGGCTTTTTGCTAGCGGGGAATGGAGAACGCTGCACGGGGAAATGGAA 952
Query 866 GGTTATCATAAAGGGCAAGCCTCTTATGTACTGACCTTGGTCTGGACAGCAGTTACTTGG 925
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 953 GGTTATCATAAAGGGCAAGCCTCTTATGTACTGACTTTGGTCTGGACAGCAGTTACGTGG 1012
Query 926 CAAGTGTGTTCTGTTGGAGTCGTGGGTTTGATATTTCTGGTGACGTCGCTCTTCTCAAAC 985
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CAAGTGTGTTCTGTAGGAGTGGTGGGTTTGATATTTCTGGTGACGTCGCTCTTCTCAAAC 1072
Query 986 GTCATTAGTACGCTCTCTCTAGCTGTGACTCCACTAGCAGCTTTGGTTGTGTTCCGTGAT 1045
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1073 GTCATTAGTACGCTCTCTCTAGCTGTGACTCCACTCGCAGCTTTGGTTGTGTTCCGTGAT 1132
Query 1046 AAAATGAGTGGTGTTAAGATTATGGCAATGCTGATCGCTATTTGGGGTTTCGCTTCTTAT 1105
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1133 AAAATGAGTGGCGTTAAGATTATGGCAATGCTGATCGCTCTTTGGGGTTTCGCTTCTTAT 1192
Query 1106 GTTTACCAGAATCATATTGATGACTTGAAAGTAAGACAAGCACGACAACAAGCTCAAGCC 1165
||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1193 GTTTACCAGAATCATATCGATGACTTGAAAGTTAGACGAGCACGACAACAAGCTCAAGCC 1252
Query 1166 GGGCGGGTAGAACCGCCCTGTTGATTCTGCGATGATTCAGGCAGAAACATTAATTTAGAA 1225
|||||||| |||||||| |||||||||||| || || |||||||||| ||| ||||| |
Sbjct 1253 GGGCGGGTGGAACCGCCTTGTTGATTCTGCAATAATACAGGCAGAAATATTGGTTTAGGA 1312
Query 1226 GGCTATACGTTCTG-TTTAGATAAGCAACAATAATTGTCACTCGTAGGACAAGCTACTGG 1284
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1313 TGCTATACGTTCTGATTTAGATAAGCAACAATAATTGTCACTGGTATGACAAGCTACTTG 1372
Query 1285 TCTTGCCATATTGTTT 1300
||||| ||||||||||
Sbjct 1373 TCTTGTCATATTGTTT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5