BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44760.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473817 jgi|Araly1|473817|fgenesh2_kg.1__3771__AT1G44760.1 1273 0.0
> Ahg473817 jgi|Araly1|473817|fgenesh2_kg.1__3771__AT1G44760.1
Length=888
Score = 1273 bits (689), Expect = 0.0
Identities = 829/892 (93%), Gaps = 27/892 (3%)
Strand=Plus/Plus
Query 2 CTACCAATTAAATCTCTCTTTTTCTTCTCTTACCATTTTCACATTTTCGAGTTTTACACC 61
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CTACCAATTAAATCTCTCTCACTCTTCTCTTTCCATTTTCACATTTTCGAGTTTTACACC 60
Query 62 AAAGCctcttcac--t-t-tctctc---tctctctactatagtctcctacta-cctacta 113
||||||||||||| | | |||||| |||||||||||||||||||||||| ||||||
Sbjct 61 AAAGCCTCTTCACTTTCTCTCTCTCTAGTCTCTCTACTATAGTCTCCTACTAGGCTACTA 120
Query 114 -ctacttcttc-tctctct-ctttcattcactacATAAAAAGCTTCGAGCTCCCATCACT 170
|||||||||| ||||||| | |||||||||||| |||||||||||||||| ||||||
Sbjct 121 CCTACTTCTTCTTCTCTCTCCCTTCATTCACTAC--AAAAAGCTTCGAGCTCTCATCACC 178
Query 171 ATATACCCTCCAAAGATGCAATTTTCAAGAAACTCAATCCTTAGGCAACTAAGCCGAAAA 230
| | || ||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 179 A-A-ACTCTCCAAAAATGCAATTTTCAAGAAACTCGATCCTTAGGCAACTAAGCAGAAAA 236
Query 231 GAAGGTTGGAGATCGGCTTCTAAAAGGTGGACTTCCGGAGATAGCTCAACAGCCTTCAAC 290
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 GAAGGTTGGAGATCGGCTTCTAAAAGGTGGACTTCCGGTGATAGCTCAACAGCCTTCAAC 296
Query 291 GACGACAC-AA-----GTG---GTGGTGGT---TACTCATCAATGGAGGGTCTTTATGGA 338
|||||||| || ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 297 GACGACACAAACGGTGGTGATTGTGGTGGTGGCTACTCTTCAATGGAGGGTCTTTATGGG 356
Query 339 GTTTACTCCGGTGGAGACACGGCGGCGAGAAGTAAGAGAGTGATGGTTGTAGTTGATGAA 398
|||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 357 GTTTACTCCGGTGGTGATACGGCGGCAAGAAGTAAGAGAGTGATGGTTGTGGTTGATGAG 416
Query 399 AGTTCGAGGTCTAAGCATGCTATGATGTGGGCTTTGACTCATTTGACTAACAAAGGAGAT 458
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 ACTTCGAGGTCTAAGCATGCTATGATGTGGGCTTTGACTCATTTAACTAACAAAGGAGAT 476
Query 459 TTAGTGACTCTTCTTCATGTTGTGTCTCCTGATGATGAAGCTACTCCTTCTTTGGCTCAA 518
||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 477 TTAATGACTCTTCTTCATGTTGTCTCTCCTCATGATGAAGCTTCTCCTTCTTTGGCTCAG 536
Query 519 TCTCTTGGTTCTCTTTGCAAAGCTTGTAAACCCGAGGTGGATGTGGAGGCATTGGTGATT 578
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 TCCCTTGGTTCTCTTTGCAAAGCTTGTAAACCTGAGGTGGATGTGGAGGCATTGGTGATT 596
Query 579 CAAGGACCAAAGCTAGCAACAGTGTTAAGCCAAGTAAAGAAACTTGAAGTCTCTGTTCTT 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAAGGACCAAAGCTAGCAACAGTGTTAAGCCAAGTAAAGAAACTTGAAGTCTCTGTTCTT 656
Query 639 GTGTTGGGTCAGAAGAAATCTGCACCACTCATCTCTTGCTTATGTGGACCTAGCAGATCA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 GTGTTGGGTCAGAAGAAATCTGCACCACTCATCTCTTGCTTATGTGGACCTAGTAGATCA 716
Query 699 GAGGAGCTCGTGAATCGTTGCATCAACGGTGCAGATTGTTTAACGATTGGTGTGAGAAAA 758
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 717 GAGGAGCTCGTGAATCGGTGCATCAACGGTGCAGATTGTTTGACGATTGGTGTGAGGAAG 776
Query 759 CAATGCAAAGGTGTTGGTGGGTACTTGATCAATACACGATGGCAGAAGAATTTCTGGCTC 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAATGCAAAGGTGTTGGTGGGTACTTGATCAATACACGATGGCAGAAGAATTTCTGGCTC 836
Query 819 TTGGCCTAATCACAATTCTAATCTTATTAGATAATTTGTGTTAATTCTGTGT 870
|||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 837 TTGGCCTAATCACAATTCTAATCTTATTAGATAAATTGTGTTAATTCTATGT 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5