BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44770.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473819 jgi|Araly1|473819|fgenesh2_kg.1__3773__AT1G44770.1 1705 0.0
> Ahg473819 jgi|Araly1|473819|fgenesh2_kg.1__3773__AT1G44770.1
Length=1158
Score = 1705 bits (923), Expect = 0.0
Identities = 1099/1180 (93%), Gaps = 28/1180 (2%)
Strand=Plus/Plus
Query 1 CAAACGACAAGTAGTTTCCTTTAGAATTTATCATTATCCAGATTTTCGAGAAGGAGACGG 60
||||||||||||||||||||| ||||||||||| |||||||| | ||||
Sbjct 1 CAAACGACAAGTAGTTTCCTTCAGAATTTATCA-TATCCAGA---T----------ACGG 46
Query 61 TgaagaagaagaagaagaTC-AAAACCATGACGAGTCACCACGCGATCGAAGTGACGAAG 119
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 47 CGAAGAAGAAGAAGAAGATCAAAAACCATGACGAGCCACCACGCGATCGAAGTGACGAAG 106
Query 120 ACGGTGCTGGAAGTAGCCGACGTAGCATGGACCGCGGTGGAAACTTACCATcaccaccac 179
|||||||| |||||||||||||| || |||||||| |||||||| |||||| ||||||||
Sbjct 107 ACGGTGCTAGAAGTAGCCGACGTGGCTTGGACCGCCGTGGAAACATACCATAACCACCAC 166
Query 180 caccaccaAGACGAAAATCACGAGTCAACGAATCCAATTTCTGATCCACGAGATCGTGAA 239
|||||||| ||||| |||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 167 CACCACCATGACGAGAATCACGAGTCAACGAATCCGATTACCGATCCACGAGATCGTGAA 226
Query 240 TTAGAAGCTCTTCGTCAAGAGAATCGTCGTCTCAGGACTTTGCTTGAATCGAATCTTAAA 299
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 227 TTAGAAGCTCTTCGACAAGAGAATCGTCGTCTCAGGACTTTGCTTGAAGCGAATCTTAAG 286
Query 300 CTCTTTGAGACTCTCGCTGAATCTGCTGCGTTCTCTCATGATTGCCCTAGCGACCTCTAT 359
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 287 CTTTTTGAGACTCTCGCTGAATCTGCTGCGTTATCTCACGATTGCCCTAGCGACCTCTAT 346
Query 360 GCTAGGCTTGTAACGATGGTTACTTC-AAGAGATTTCTTGGCTAGATTAGAGAATCTAAG 418
||| |||||||| ||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 347 GCTCGGCTTGTATCGATGGTTACTTCGAA-AGATTTCTTGGCTAGATTAGAGAAACTAAG 405
Query 419 ACAAGCTTTATCTAATGGAACTCAG-AATCAATTTCCATTCAAGGAACCAACAGAAGATG 477
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 406 ACAAGCTTTATCTAATGGAACGC-GAAATCAATTTCCATTCAAGGAACCAACAGAAGATG 464
Query 478 ATGTGAAGACTGTTGAAGTTCTTATAGAGATGGATCATCAAGAGCCAAGTTGGTGGGTTT 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATGTTAAGACTGTTGAAGTTCTTATAGAGATGGATCATCAAGAGCCAAGTTGGTGGGTTT 524
Query 538 TAGTTACTGATGATATGGTTCCTAGTAATGTCGAGGAACAAAGCGCGATCGATAACGAAC 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 525 TGGTTACTGATGATATGGTTCCTAGTAATGTCGAGGAACAAAGCGCGATCGATAATGATC 584
Query 598 ATTACATTGTTGTGAATGAAGAACATGTGATTGATGCTGTTGCTCACTTTTTGGCTAAAT 657
|||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct 585 ATTACATTGTTGTGAATGAAGAACTTGTGGTTGATGCTGTTGCTCACTTCTTGGCTAAAT 644
Query 658 GTATTATGTCAAATCCCAAAGCTAAGAATCTCAAACCTGAAGAGCTTCAGAAACTTTTGG 717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 645 GTATTATGTCAAATCCCAAAGCTAAGAATCTCAAACCTGACGAGCTTCAGAAACTTTTGG 704
Query 718 TGCAAGAAGTTACTGCTCTGAGCAAGGTAGGGAAGGTAGTGGATATATGGCATGCTGGGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CCCAAGAAGTTACTGCTCTGAGCAAGGTAGGGAAGGTAGTGGATATATGGCATGCTGGGA 764
Query 778 AAATGTTCTACACACTGTCCACTTGGGGACTTGCATTTGGAGGGTTATACCAAGCTCGTG 837
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 765 AAATGTTCTACACACTGTCCACTTGGGGACTTGCATTTGGAGGGTTGTACCAAGCTCGTG 824
Query 838 GTGTGCTGAAGATAGCTGCTAAGGGTGTTCATGCGACCAGCAAGGTTGTTCTTAGGGCTC 897
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GTGCGCTGAAGATAGCTGCTAAGGGTGTTCATGCGACCAGCAAGGTTGTTCTTAGGGCTC 884
Query 898 TTTGAAA-GTTATAAGAGGTCTATCTAATGCGATGAAAGTGGGAATGATGATCTTCAACT 956
| ||||| || |||||||||||||||||||||||| ||| || | || ||||| |||||
Sbjct 885 TCTGAAACGT-ATAAGAGGTCTATCTAATGCGATGGAAGCGG-A--GACGATCTGCAACT 940
Query 957 ATCTTTGGGTTTGTCTTT-CTGTGCGAGACTCTGTTTTTAAATTAATAGCATTGCGTGTG 1015
|||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||
Sbjct 941 ATCTTTGGGTTTGTCTTTACTGTACGAGACTCT-TTTTTAAATTACTAGCATTGCTTGTG 999
Query 1016 TAAATAGTGTAAATAGGGTTTGATCAATGTTGTATTTCATATTGATTTCAAATTCGACAT 1075
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1000 TAAATAGTGTATATAGGGTTTGATCAATGTTGTATTTTATATTGATTTCAAATTCGACAT 1059
Query 1076 TTGTTCTTTGATTCTCGTTTATAAACGCAGACAATTTGTGAATATCGAAC-AATGTTTGC 1134
||||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||
Sbjct 1060 TTGTTCTTTGATTCTCGTTTATAAAAGCAGACAATTTGTGAATATTGAACCAAC-TTTGC 1118
Query 1135 AGTTACTCTACTTATCAAAGACCGACAACAGACCTGAAAA 1174
|||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 1119 AGTTACTCAACTTATCATAGATCGAAAACAGACCTGAAAA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5