BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44780.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913642 jgi|Araly1|913642|Al_scaffold_0001_3896 1724 0.0
> Ahg913642 jgi|Araly1|913642|Al_scaffold_0001_3896
Length=1401
Score = 1724 bits (933), Expect = 0.0
Identities = 1192/1314 (91%), Gaps = 29/1314 (2%)
Strand=Plus/Plus
Query 46 ATGGAGACGGCGGAGATGAATCATAATTCCGGTAAGAGTAATTTGAAGAACGTTGATGCA 105
|||||||||| ||||| |||||| |||||||||||||||||| |||| || |||||||
Sbjct 1 ATGGAGACGGAGGAGAGGAATCAGGATTCCGGTAAGAGTAATTCGAAGGACAATGATGCA 60
Query 106 ACGGAGATCG-AGTTCAAGATTCTGGCGGCTTTGCGATCACGCGTAACCTACCTCAGAAA 164
|| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ACAGAGAT-GAAGTTCAAGATTCTGGCGGCTTTGCGATCTCGCGTAACCTACCTCAGAAA 119
Query 165 TGAAGCAGACTGCTTCACCTTGGTGAGTGTGAGGAGGATGTTAGAGGAAGATATTGGATT 224
|||||||||||||||| | ||||||||| |||||||||||||||||||||| |||||
Sbjct 120 CAAAGCAGACTGCTTCACGATCGTGAGTGTGCGGAGGATGTTAGAGGAAGATATCGGATT 179
Query 225 GGAGAAATGTGATTTGGATGTGTATAAGAGCTTTGTTAAAGAGCATTTGGTTAAGTGTTT 284
|||||||| || ||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 180 GGAGAAATTTGCTTTGGATGTGTATAAGAGCTTTGTTAAAGAGAAATTGGTTCAGTGTTT 239
Query 285 AGAAGAAGCT-G-GG-AATAATGATACTTCGGAGAATTCTCAAGAAACTGAGA--G--G- 336
|||||||||| | || ||||||| | | || ||||||||||||||||||| | |
Sbjct 240 AGAAGAAGCTGGTGGTAATAATG--A--T--GAAAATTCTCAAGAAACTGAGAGGGAAGA 293
Query 337 -GAAGACGATGAGATTCCAACT-AAAGAAGTAGCAGAACAATCTGAAGAGCACGA-GCCA 393
|||||||||| |||||||| | |||||||| | ||||| |||||||||||| || || |
Sbjct 294 CGAAGACGATGTGATTCCAA-TCAAAGAAGTTGTAGAACTATCTGAAGAGCATGAGGCGA 352
Query 394 ATGAACGATGCTGGTGAAGAGAACACA-TCGAAAAGGGAAGCTAAAGATGTGAAGGGCAA 452
| ||||||| |||| |||||||||||| || ||||||| |||||||||| | |||| |||
Sbjct 353 A-GAACGATACTGGGGAAGAGAACACATTC-AAAAGGGTAGCTAAAGATATCAAGGACAA 410
Query 453 GGGAAATAAAGAAACCCTGCAGAGGGATATAAAGAGAGCCCTTC-GGAAGAGAGCTTCAT 511
||||||||||||| || ||||||| ||||||| ||||||||| | |||| ||| |||| |
Sbjct 411 GGGAAATAAAGAAGCCTTGCAGAGTGATATAAGGAGAGCCCTCCGGGAA-AGAACTTCGT 469
Query 512 ATATTAAGGCTAATTCAGAGACAATTACAATGGCTTCACTTCGTCGACTTCTAGAGGAAG 571
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 470 ATATTAAGGCTAATTCAGAGACAATTACAATTGCTTCACTTCGTCGACTTTTAGAGGAAG 529
Query 572 ATCTTAAATTAGAGAAGGAGTCTCTTGATCTATTTAAGAAGTTCATTAACAAAGAATTGG 631
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 530 ATCTTAAATTAGAGAAGGAGTCTCTTGATCCGTTCAAGAAGTTCATTAACAAAGAATTAG 589
Query 632 ATGAAGTACTACAACTTCCTGATGCTCCTAAATGTTCGACTGAGTCTATTGTGAAAAATG 691
|||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 590 ATGAAGTACTACAACTTCCTGAGGCTCCTAAACGTTCGACTGAGTCTATTGGGAAAAAAC 649
Query 692 TGAAGAAAAAGGTCAAGAGCACACCATCTAAGATGGTAAGCAGTGAATACAATTCTGATT 751
|||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||
Sbjct 650 TGAAGAAAAAGGTCAAGAGCACACTATCTAAGAAGGTAAGCAGTGAAGAAAATTCTGATT 709
Query 752 CAGATACTGAGGGGAATGTGGACAACGA-GGAGGTAGCTGTAAAGAAGACAATGGCCCGA 810
||||| | |||||| ||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 710 CAGATGCGGAGGGGGCTGTGGACGACGAGGGA-GTAGCTGTAAAGAAGACAATGGCCCGA 768
Query 811 AAAGTTAAATTATCAAAACCAGAGATGATGGGAAAACGGAAAAGTGAAAATGGTAAACAA 870
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 769 AAAGGAAAATTATCAAAACCAGAGATGATGGGAAAACGGAAAAGTGAAAATGGCAAACAT 828
Query 871 GTATCTGGAAGAAAGAAAGCAAAACATACAGAAATAGATTCAGAGAATGACAGTGATTCA 930
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||
Sbjct 829 GTATCTGGGAGAAAGAAAGCAAAACATACAGAAACAGATTCGGAGAATGACAGTGATGCA 888
Query 931 GGGGATAGTGAAAAATCTTTGAAGCAGACTAAGGAGACTGCAACTGATGTGTATGGAAAG 990
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 889 GGAGATAGTGAAAAATCTTTGAAGCAGACAAAGGAGACTGCAACTGATGTGTATGGAAAG 948
Query 991 CGTGTTGAGCATCTCAAATCAGTCATCAAATCTTGTGGGATGAGTGTTCCTCCAAACATT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 CGTGTTGAGCATCTCAAATCAGTCATCAAATCTTGTGGGATGAGTGTTCCTCCTAACATT 1008
Query 1051 TACAAGAAAGCCAAACAGGCTCCTCAAGAGAAACGTGAGGCTATGCTAATAGAAGAACTT 1110
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1009 TACAAGAAAGCCAAACAGGCTCCTGAAGAGAAACGTGAGGCTACGCTAATAGAAGAACTT 1068
Query 1111 GAGCAGATACTTGCCAAAGAAGGGCTGTCTTCAGATCCTTCAGCGCTAGAGATCAAAGAA 1170
|||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1069 GAGCAGATACTTTCCAAAGAAGGGCTGTCTTCAGATCCTTCAGAGAAAGAGATCAAAGAA 1128
Query 1171 GTAAAAAAGAGGAAGAATATATCAAGAGAGCTTGAGGGTATTGATACAAACAACATTGTA 1230
||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 1129 GTAAAAAAGAGGAAGGGTATATCAAAAGAACTTGAGGGTATTGATACAAGTAACATTGTA 1188
Query 1231 TGGAACTCAAGGAGAA-GATCCTCCACAAGTTTCGCGCCTCCTCCAAAACCGAAAGTAAC 1289
|||| ||||||||||| | || || |||||||| |||||||||||||||||||| ||||
Sbjct 1189 TGGAGCTCAAGGAGAAAG-TCATCTACAAGTTTTACGCCTCCTCCAAAACCGAAAATAAC 1247
Query 1290 AGCGGAAAGCGAGAGCGAGAGTGATGAACCGGAAGATTCTgagaatgaagagga 1343
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1248 AGCGGAAAGCGAGAGCGAGAATGATGAACCGGAAGATACTGAGAATGAAGAGGA 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5