BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44790.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922918 jgi|Araly1|922918|scaffold_104199.1 1002 0.0
> Ahg922918 jgi|Araly1|922918|scaffold_104199.1
Length=634
Score = 1002 bits (542), Expect = 0.0
Identities = 613/645 (95%), Gaps = 13/645 (2%)
Strand=Plus/Plus
Query 60 CTTTCTCTACATCACCGGTAAAAATGGCGATGTGGGTATTCGGGTACGGATCTTTAATAT 119
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 CTTTCTCTACCTCACCGGTAAAAATGGCGATGTGGGTATTCGGATACGGATCTTTAATAT 60
Query 120 GGAAAACGGGTTTTCCTTTCGACGAAAGCCTCCCTGGTTTCATTAAAGGCTATCGCCGTG 179
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 61 GGAAAACGGGTTTTCCTTTCGACGAAAGCCTCCCTGGTTTCATCAAAGACTATCGCCGTG 120
Query 180 TCTTCCATCAAGGTAGTACTGATCATAGAGGAACTCCGGATTTTCCGGGAAGAACAGTGA 239
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 121 TCTTCCATCAAGGTAGTACTGATCATAGAGGAACTTTGGATTTTCCGGGAAGAACTGTGA 180
Query 240 CATTAGAAGCTGCTCATGAAGAAGTTTGTTGTGGAGTTGCTTACAAGATAACTAAAGAGG 299
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CATTAGAAGCTGCTCATGGAGAAGTTTGTTGTGGAGTTGCTTATAAGATAACTAAAGAGG 240
Query 300 AAGATAAAAGAGATGCTTTATTGCATTTGGAAGTGAGGGAGAAGCAATATGATCAGAAAG 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGATAAAAGAGATGCTTTAATGCATTTGGAAGTGAGGGAGAAGCAATATGATCAGAAAG 300
Query 360 AGTATCTTGATTTCTTCACTGACTCTAATGCTTCGGAACCGGCTGTGGCAGGAGTAATGG 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGTATCTTGATTTCTTCACTGACTCTAATGCTTCGGAACCGGCTGTGACAGGAGTAATGG 360
Query 420 TGTACATAGCTTCACCTGACAAGAAGAGCAACAACAACTACTTAGGACCAGCTCCTCTTG 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATACATAGCTTCACCTGACAAGAAGAGCAACAACAACTACTTAGGACCAGCTCCTCTTG 420
Query 480 AAGATATTGCCAAACAGATAGTTAAAGCGAAAGGACCTTCAGGGCCAAACAGAGACTATC 539
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATATTGCCAAACAGATAGTTTTAGCGAAAGGACCTTCAGGGCCAAACAGAGACTATC 480
Query 540 TCTTCAACCTCGAAGAGGCTCTTGCTCAACTCGGGTTTAAAGATAAACATGTCACAGATC 599
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTTCAACCTCGAAGAGGCTCTCGCTCAACTCGGGTTTAAAGATAAACATGTCACAGATC 540
Query 600 TTGCAAACCAAGTTAGGCACATTCTTTCAGA-ATCC-GAAGAGTTAGACATTGATGCCAC 657
||||||||||||||||||||||||||||||| | || | ||||| ||||||||||||||
Sbjct 541 TTGCAAACCAAGTTAGGCACATTCTTTCAGAGACCCCG--GAGTTTGACATTGATGCCAC 598
Query 658 CGCCGCCACCGCCAACAATGTCTAGATTCACAGCTTCTTTTCGAT 702
|||| | | |||||||||||||| ||| |||||||||||
Sbjct 599 CGCC---A-----A-CAATGTCTAGATTCCCAGTTTCTTTTCGAT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5