BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44800.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473821 jgi|Araly1|473821|fgenesh2_kg.1__3775__AT1G44800.1 2248 0.0
> Ahg473821 jgi|Araly1|473821|fgenesh2_kg.1__3775__AT1G44800.1
Length=1546
Score = 2248 bits (1217), Expect = 0.0
Identities = 1459/1571 (93%), Gaps = 36/1571 (2%)
Strand=Plus/Plus
Query 1 CCTGCCTCAAACAAATAGAGCTTATCTCATCACTCACCAAACAACTCTCATCAATATAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTGCCTCAAACAAATAGAGCTTATCTCATCACTCACCAAACAACTCTCATCAATAT--- 57
Query 61 GAGAAGAGAGTGGTAGAGTTATATATTACACACATAAACTTAGATATAGTAGTGTTATAT 120
| |||||| |||| | | | || | |||| | || |||||||||||| |||||
Sbjct 58 -A-AAGAGA-----AGAG--ACACA-TA-A-ACAT--A-TT-GATATAGTAGTGATATAT 101
Query 121 TCTTGATTAAGTAATAAAGATGAAAGGTGGAAGCATGGAGAAAATT-AAGCCGATATTGG 179
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 102 TCTCGATTAAGTAATAAAGATGAAAGGTGGAAGCATGGAG-AAATTGAAGCCGATATTGG 160
Query 180 CGATAATTTCACTGCAATTTGGGTATGCAGGCATGTACATCATCACCATGGTCTCGTTCA 239
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 161 CGATAATTTCACTGCAATTTGGGTATGCAGGCATGTATATCATCACTATGGTCTCGTTCA 220
Query 240 AACATGGCATGGACCATTGGGTTCTTGCTACATACCGTCATGTCGTAGCCACGGTTGTCA 299
| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 221 AGCATGGCATGGACCATTGGGTTCTTGCCACATACCGTCATGTCGTCGCCACGGTTGTTA 280
Query 300 TGGCTCCCTTTGCTCTCATGTTCGAGAGGAAAATTAGGCCCAAGATGACACTAGCAATAT 359
||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 281 TGGCTCCCTTTGCTCTCATTTTCGAGAGGAAAATTAGGCCCAAGATCACACTACCAATAT 340
Query 360 TCTGGAGGCTTCTTGCTCTTGGAATATTAGAGCCCCTCATGGACCAGAATTTGTACTACA 419
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 341 TCTGGCGGCTTCTTGCTCTTGGAATATTAGAGCCCCTTTTGGACCAGAATTTGTACTACA 400
Query 420 TAGGATTGAAAAACACATCAGCATCGTACACTTCTGCCTTTACCAATGCACTTCCCGCCG 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TAGGATTGAAAAACACGTCAGCATCGTACACTTCTGCCTTTACCAATGCACTTCCCGCCG 460
Query 480 TCACCTTCATTCTCGCCCTCATTTTCAGGCTTGAGACGGTGAACTTTAGAAAGGTCCACA 539
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 461 TCACCTTCATTCTCGCCCTCATTTTCAGGCTTGAGACCGTCAACTTTAGAAAGGTCCACA 520
Query 540 GTGTTGCAAAAGTGGTAGGAACGGTAATAACGGTTGGAGGAGCAATGATCATGACTTTGT 599
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 521 GTGTTGCAAAAGTGGTAGGAACGGTAATAACAGTAGGAGGAGCAATGATAATGACTTTGT 580
Query 600 ACAAAGGTCCGGCCATTGAGATTGTGAAGGCCGCACATAATTCTTTCCACGGTGGTTCGA 659
|||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| |
Sbjct 581 ACAAAGGTCCGGCCATCGAGATCGTGAAAGCCGCTCATAATTCTTTCCACGGCGGTTCAA 640
Query 660 GCAGCACACCCACCGGCCAACATTGGGTCCTTGGAACCATAGCCATTATGGGCAGTATCT 719
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 641 GCAGCACGCCCACCGGCCAACACTGGGTCCTCGGAACCATAGCCATTATGGGCAGTATCT 700
Query 720 CTACATGGGCTGCTTTCTTCATTTTACAGTCATACACATTAAAAGTCTATCCAGCTGAGC 779
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 701 CTACATGGGCTGCTTTCTTCATTTTACAATCATACACATTAAAAGTTTATCCAGCTGAGC 760
Query 780 TATCACTAGTAACGTTGATATGTGGGATAGGGACGATCCTAAACGCTATTGCTTCGCTAA 839
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 761 TATCACTTGTAACGTTGATATGTGGGATAGGGACGATCCTAAACGCCATTGCTTCGCTAA 820
Query 840 TAATGGTTCGTGACCCGAGTGCATGGAAAATCGGCATGGATTCAGGGACACTCGCCGCGG 899
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 821 TAATGGTTCGTGACCCGAGTGCATGGAAAATCGGTATGGATTCCGGAACACTCGCCGCGG 880
Query 900 TTTACTCTGGAGTGGTTTGTTCGGGAATAGCTTATTACATACAAAGCATTGTGATTAAGC 959
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 881 TTTACTCTGGAGTGGTTTGTTCGGGGATAGCGTATTACATACAAAGCATTGTGATTAAGC 940
Query 960 AACGTGGACCGGTTTTTACGACGTCGTTTAGTCCTATGTGTATGATCATCACTGCCTTCC 1019
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AACGTGGCCCTGTCTTTACGACGTCGTTTAGTCCTATGTGTATGATCATCACTGCCTTCC 1000
Query 1020 TCGGTGCATTGGTTTTGGCTGAGAAAATCCATCTCGGAAGCATAATCGGGGCGGTTTTCA 1079
|||| |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||
Sbjct 1001 TCGGCGCATTGGTTTTGGCTGAGAAAATCCACCTTGGAAGTATAATTGGGGCAGTTTTCA 1060
Query 1080 TAGTGCTTGGACTATACAGTGTGGTATGGGGTAAAAGTAAAGACGAAGTGAATCCTTTGG 1139
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1061 TAGTTCTTGGACTATACAGTGTGGTATGGGGAAAAAGTAAGGACGAAGTGAATCCTTTGG 1120
Query 1140 ATGAGAAAATCGTAGCCAAGTCCCAAGAGCTTCCGATTACTAACGTAGTCAAACAAACGA 1199
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1121 ATGAGAAAATCGTAGCCAAGAACCAAGAGCTTCCGATCACTAACGTAGTCAAACAAACGA 1180
Query 1200 ACGGTCACGATGTCTCGGGAGCACCGACTAACGGTGTGGTTACCAGTACCTGATCCAAGT 1259
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1181 ACGGTCATGATGTCTCGGGAGCACCGACTAATGGTGTGGTTACAAGTACCTGATCCAAGT 1240
Query 1260 CCCAAAAGAGAAGAAAGATACTTAAACAAAGATCTCATCTCCATGCATTGGAGGTGGA-A 1318
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1241 TCCAAAAGAGAAGAAAGATACTTAAACAAAGATTTCATCTCCATGCATTGGAGGTGGAGA 1300
Query 1319 gttttgattatctttcttgttg-tttt-tgt----gttttttctttt--acattttctaa 1370
||||| ||||||||||||||| |||| ||| ||||||| |||| |||||||||||
Sbjct 1301 -TTTTGGTTATCTTTCTTGTTGATTTTGTGTTTTTGTTTTTTTTTTTTTACATTTTCTAA 1359
Query 1371 tcgatctacgcttaacttttagtatctttttaCCTTATGTAATGATTTTCTGCTTCTACT 1430
||| ||||||||||||||| ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct 1360 TCGCTCTACGCTTAACTTT-AGTATCTTTTTACATTATGTA-TGTTTTTCAGCTTTTACT 1417
Query 1431 TTCTTGTATTT-GAAATTTCCAAAACGAATGATGAATGCATCATTTGGTAAAATTTGAGC 1489
||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 1418 TTCTTGTATTTTGAAATTTCCAGAACGAATGATGAATGAATCATTTGGTAAAACTTGAGC 1477
Query 1490 CTACTTAACaaaaaaaaGGGTAACTCTTATAACTCCAAGAAACTATGGTCGAAATTTGGA 1549
||||| ||| | ||| |||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1478 CTACTAAACTATAAA--GGGTAACTTTTATAACTCCAAGAAACTATAGTCGATATTTGGA 1535
Query 1550 TGTTATACATA 1560
|||||||||||
Sbjct 1536 TGTTATACATA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5