BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44810.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891028 jgi|Araly1|891028|Al_scaffold_0007_3014 708 0.0
Ahg931413 jgi|Araly1|931413|scaffold_303870.1 366 2e-100
Ahg475156 jgi|Araly1|475156|fgenesh2_kg.2__286__AT1G61730.1 82.4 8e-15
> Ahg891028 jgi|Araly1|891028|Al_scaffold_0007_3014
Length=732
Score = 708 bits (383), Expect = 0.0
Identities = 604/705 (86%), Gaps = 38/705 (5%)
Strand=Plus/Plus
Query 293 ATTCCGACTCAGATAAGCCAATCGTCTTAACC-AGTCAGAAGAAGAAAGAAGGTACTGAT 351
|||| ||||||||||||||||||||||| ||| || |||| || || |||| |||||||
Sbjct 38 ATTCTGACTCAGATAAGCCAATCGTCTTCACCAAG-CAGATGAGGATGGAAGCTACTGAT 96
Query 352 T------C------ATCAGGGACGAAGCGAGCTAGTGAAGGAACTAGCTCAAAGGACATC 399
| | ||||| || ||||||||||||||||||||| | ||| |||||||||
Sbjct 97 TCACCGGCGGTGAAATCAGTGAAGAAGCGAGCTAGTGAAGGAACCACCTCGAAGGACATC 156
Query 400 AAAAGAGCTAAGAAAGTTTCAGGAGATGACGATAACAAAAA-----ATTT-CAGAGTTTA 453
||||||||||||||||||||||| || ||||||||||||| |||| || || |||
Sbjct 157 AAAAGAGCTAAGAAAGTTTCAGGCGACAACGATAACAAAAAGCCGCATTTACATAGATTA 216
Query 454 TGGACTAAAGAAGATGAGATCTCTCTGTTACAAG--GTATGATTGATTTCAAAGCTGAGA 511
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 217 TGGACTGAAGAAGATGAGA--TCTCTGTTACAAGAAACATGATTGATTTCAAAGCTGAGA 274
Query 512 CAGGTACAAGTGCTCATGATGATATGAATGGGTTTTTTGATATTGCTAAGAGATAC-ATA 570
||||||||||| || |||||||||||||| |||||| ||||| ||||||| || | |||
Sbjct 275 CAGGTACAAGTCCTTATGATGATATGAATAAGTTTTTCGATATCGCTAAGAAAT-CTATA 333
Query 571 AGCTTTGATGTTAGTAAGA-TCCAATTCGGTGACAAGATTAGAGGTTTAAAGAAGAAGTA 629
||||||||||||||||||| || | || |||||||||||||||||||||||||| |||||
Sbjct 334 AGCTTTGATGTTAGTAAGAGTC-AGTTTGGTGACAAGATTAGAGGTTTAAAGAACAAGTA 392
Query 630 TTTTGGTGTAA-GGAAGAAGAAAGGT-TTAGACTTGGATCATGATAAGAAATGTTTGGGA 687
||||||| || ||||||||||| || || || | |||||||||||||||||||||| |
Sbjct 393 TTTTGGTA-AACGGAAGAAGAAAAGTGTT-GAATCCGATCATGATAAGAAATGTTTGGAA 450
Query 688 TTGGCTAAGTCTATTTGGGGA-CTTGATGGTAAGGAAGTGGTGGTTCTTGGAGGAGATTC 746
||||||||||||||||||||| || || | ||||||||||||| ||||||||||||||||
Sbjct 451 TTGGCTAAGTCTATTTGGGGATCT-GAAGATAAGGAAGTGGTGATTCTTGGAGGAGATTC 509
Query 747 GGAGACGTCGAATTGGTTTGAGAAGTCGTTTTTGGTTCGGGTTGTTGCGAGGCTTGGTGT 806
|||| ||||||||||||||||||||| ||||||||||||||| ||| ||| || ||| |
Sbjct 510 GGAGTGGTCGAATTGGTTTGAGAAGTCTTTTTTGGTTCGGGTTATTGTGAGTCTCGGTAT 569
Query 807 GGATGAGTGTATTGTGAAGTGGAAATGGAGTAAGGTGTCTAAGGAGACTAAGAAGAGGAT 866
|||||||||| |||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 570 GGATGAGTGTTTTGTGAAGTGGAAATGGAGTAAGGTGCCTGTGGAGATTAAGAAGAAGAT 629
Query 867 TGAAGAGAAGATGAAGATGGTGGA-GGCTAAGGAACTTGAGTTGTTGTCGCAGAAGATAG 925
|||||| |||||||||||||| || || ||||||| || |||||||||| | |||||| |
Sbjct 630 TGAAGAAAAGATGAAGATGGTTGAAGG-TAAGGAATTTCAGTTGTTGTCACTGAAGATTG 688
Query 926 ATGTTTTGAAGGAGGTGGCTTCTGT-GATTGCTGAAACTATCTAA 969
||||||||||||||||| |||| || |||||||||||| | ||||
Sbjct 689 ATGTTTTGAAGGAGGTGACTTC-GTTGATTGCTGAAACCAACTAA 732
> Ahg931413 jgi|Araly1|931413|scaffold_303870.1
Length=809
Score = 366 bits (198), Expect = 2e-100
Identities = 249/274 (91%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 717 TAAGGAAGTGGTGG-TTCTTGGAGGAGATTCGGAGACGTCGAATTGGTTTGAGAAGTCGT 775
||||||||||| || |||| |||||||||| ||| |||||||||||||||| ||||| |
Sbjct 537 TAAGGAAGTGG-GGATTCTCCGAGGAGATTCAGAGTCGTCGAATTGGTTTGACAAGTCTT 595
Query 776 TTTTGGTTCGGGTTGTTGCGAGGCTTGGTGTGGATGAGTGTATTGTGAAGTGGAAATGGA 835
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 596 TTTTGGTTCGGGTTGTTGCGAGTCTCGGTGTGGATGAGTGTATTGTGAAGTGGAAATGGA 655
Query 836 GTAAGGTGTCTAAGGAGACTAAGAAGAGGATTGAAGAGAAGATGAAGATGGTGGAGGCTA 895
|||||||| | | ||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 656 GTAAGGTGACGATGGACACTAAGAAGAGGATTGAAGAGAAGATGAAGCTGGTGGAGGGTA 715
Query 896 AGGAACTTGAGTTGTTGTCGCAGAAGATAGATGTTTTGAAGGAGGTGGCTTCTGTGATTG 955
||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 716 AGGAATTTGAGTTGTTGTCGCAGAAGATTGATGTTTTGAAGGAGGTGATTTCGGTGATTG 775
Query 956 CTGAAACTATCTAAGAAGAAGGACTTGGATTGTT 989
|||| |||||||||||||||| | || |||||||
Sbjct 776 CTGAGACTATCTAAGAAGAAGTAATTAGATTGTT 809
Score = 206 bits (111), Expect = 4e-52
Identities = 231/287 (80%), Gaps = 16/287 (6%)
Strand=Plus/Plus
Query 70 AAAATTCCGATGAACAAGAAACTTCTCAACCCTCTTGAAGATCCACCAACCGCTTCTTCA 129
||||| || ||| |||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 13 AAAATCCCAATGGCCAAGAAACTTTTGAACCCTCTGGAAGATCCACCAACCGCTTCTTCA 72
Query 130 AGCGAAGACGTCGACGAAGAGATTTCATCAGGAGAAGATGAAAAAGAACATATCTCCAAT 189
||||| |||| ||| | ||||||||||| | |||||| | ||||||| |||||||||
Sbjct 73 AGCGACGACGACGAAGTTGAGATTTCATCTGAAGAAGACG---AAGAACAGATCTCCAAT 129
Query 190 TCTTCTTCTTCTGAAGAAGAAAACGAACTCAAAGAT-CTCTCCACTCAAACCCTAAATTC 248
||||||||| |||||||| || | || | || | ||||||| |||||||||| ||
Sbjct 130 TCTTCTTCTAAAGAAGAAGATCCCG--C-CACA-ATTCCCTCCACTAAAACCCTAAAATC 185
Query 249 TCCTTCCACCGAGGCTCCAACTCTCGATTCTGGATCTGAGACAAATTCCGACTCAGATAA 308
||||||| | | ||||||| || ||||||||| |||||| | |||| |||||||| ||
Sbjct 186 TCCTTCCGCTGCCGCTCCAAGTCCCGATTCTGGTTCTGAGTCGGATTCTGACTCAGAGAA 245
Query 309 GCCA-ATCGTCTTAACCAGTCAGAAGAAGAAAGAAGGTACTGATTCA 354
|||| | |||||| |||| ||||||| | |||| ||||||||||
Sbjct 246 GCCACA-CGTCTTCACCA---AGAAGAA-A--GAAGCTACTGATTCA 285
Score = 154 bits (83), Expect = 2e-36
Identities = 109/121 (90%), Gaps = 4/121 (3%)
Strand=Plus/Plus
Query 591 CCAATTCGGTGACAAGATTAGAGGTTTAAAGAAGAAGTATTTTGGTGT-AAGGAAGAAGA 649
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 315 CCAATTCGGTGACAAGATTAGAGGTTTAAAGAACAAGTATTTTGGT-TCAAGGAAGAAGA 373
Query 650 AAGGT-TTAGACTTGGATCATGATAAGAAATGTTTGGGATTGGCTAAGTCTATTTGGGGA 708
|| || || || | |||||||||||| || ||||||| |||||| |||||||||||||||
Sbjct 374 AAAGTGTT-GAATCGGATCATGATAACAAGTGTTTGGAATTGGCCAAGTCTATTTGGGGA 432
Query 709 C 709
|
Sbjct 433 C 433
> Ahg475156 jgi|Araly1|475156|fgenesh2_kg.2__286__AT1G61730.1
Length=1321
Score = 82.4 bits (44), Expect = 8e-15
Identities = 77/91 (85%), Gaps = 9/91 (10%)
Strand=Plus/Plus
Query 69 GAAAATTCCGATGAAC-AAGAAACTTCTCAACCCTCTT-GAAGATCCACCAACCGCTTCT 126
||||||||||||| || |||||| ||||| ||| || |||||||||||||||||||||
Sbjct 85 GAAAATTCCGATG-ACGAAGAAA---CTCAATCCT-TTAGAAGATCCACCAACCGCTTCT 139
Query 127 TCAAGCGAAGACG-TCGACGAAGAGATTTCA 156
|||||||| |||| | |||| |||| ||||
Sbjct 140 TCAAGCGACGACGAT-GACGTCGAGACTTCA 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5