BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44820.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473822 jgi|Araly1|473822|fgenesh2_kg.1__3776__AT1G44820.1 2176 0.0
Ahg473806 jgi|Araly1|473806|fgenesh2_kg.1__3760__AT1G44180.1 1541 0.0
> Ahg473822 jgi|Araly1|473822|fgenesh2_kg.1__3776__AT1G44820.1
Length=1582
Score = 2176 bits (1178), Expect = 0.0
Identities = 1475/1612 (92%), Gaps = 46/1612 (3%)
Strand=Plus/Plus
Query 4 aaaaaaaCCTTTCAACTTCCTTCCATGGCGATatctcctcttctctggactct-tatcat 62
|||||||||||| || ||||||||||| | || |||||||||||||||| | || |
Sbjct 1 AAAAAAACCTTTGAA----CTTCCATGGCGGTCGCTTCTCTTCTCTGGACTCTCT-TCCT 55
Query 63 cttctccataatcttctcactccaat-c-c-tcctcctccGAAGAAGACACACCAATCAC 119
||||||||| |||||||||||||||| | | ||||||||| ||| |||||||||||
Sbjct 56 CTTCTCCATCATCTTCTCACTCCAATCCTCTTCCTCCTCCTCCTCAGATACACCAATCAC 115
Query 120 ACGATTCCAACAATACTTAAGATTCAACACAGCTCATCCAAACCCTAACTACACCGCACC 179
|||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 116 ACGATTCCAACAATACCTCAGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACC 175
Query 180 AATCTCCTTCCTCATTAACCAAGCTCAATCAATCGGTCTCACTACCAAAACAATCGAATT 239
| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 176 AGTCTCATTCCTCATTAACCAAGCTCAATCCATCGGTCTCACTACTAAAACCATCGAATT 235
Query 240 CATCTCTGGCAAACCAATTCTTCTCATCACATGGCTAGGCTCAAACCCTAACCTCCCATC 299
| ||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 236 CGTCTCTGGTAAACCAGTTCTCCTCCTCACATGGCTAGGCTCAAACCCTAACCTCCCATC 295
Query 300 AATTCTCTTCAACTCTCATCTCGATTCAGTCCCCGCCGAATCAGAGAAATGGACAT-ATC 358
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||| | |||
Sbjct 296 AATTCTCTTCAACTCTCACCTCGACTCAGTCCCCGCCGAATCCGAGAAATGGA-TTCATC 354
Query 359 CACCGTTCTCAGCTCACAAAACCATCGACGGCCACATCTACGCTCGAGGAGCGCAAGACG 418
|||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||
Sbjct 355 CACCGTTCTCAGCTCACAAAACCAACGATGGTCACATCTACGCTCGCGGCGCGCAAGACG 414
Query 419 ACAAGTGTATCGGAGTTCAATATCTAGAATCAATCAGAAACTTGAAATCGAGAGGCTTC- 477
||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 415 ACAAGTGTATCGGAGTTCAATATCTAGAATCAATCAGGAATTTGAAATCGAGAGGATTCG 474
Query 478 TCACCTCTCCGTACGATTCATATCTCTTACGTTCCTGAAGAAGAGATCGGTGGATTCGAC 537
| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 T-TCCTCTTCGTACGATTCATATCTCTTATGTTCCTGAAGAAGAGATCGGTGGATTCGAC 533
Query 538 GGGATGATGAAATTCGCGGCGTCATCGGAGTTTAAGGATTTGAATTTGGGATTTGCTATG 597
||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 534 GGGATGATGGAATTCGCTGCGTCATCGGAGTTTAGGGATTTGAATTTGGGATTTGCTATG 593
Query 598 GATGAAGGACAAGCTAATCCTGGCGATGAATTTAGGGTTTTTTACGCTGATCGAGTTCCA 657
|||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 594 GATGAAGGACAAGCGAATCCTGGTGATGAATTTAGGGTTTTTTATGCTGATCGGGTTCCG 653
Query 658 TGGCATTTTGTTATTAAAGCTGAGGGGATTCCAGGTCATGGCGCTAAGCTTTATGATAAT 717
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 654 TGGAATCTTGTTATTAAAGCTGAGGGGATTCCAGGTCATGGAGCTAAGCTTTATGATAAT 713
Query 718 TCAGCTATGGAGAATTTGATGAAGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAG 777
||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 714 TCAGCTATGGAGAATTTGATGAAGAGTGTTGAGTTGATTTCGAAGTTTAGAGAGACACAG 773
Query 778 TTTGATTTTGTTAAAGCTGGTAAAGCTGCGTATTCGGAGGTTATCTCTGTGAATCCAGTT 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 TTTGATTTTGTTAAAGCTGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTT 833
Query 838 TATCTTAAAGCTGGAACTCCTACTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAA 897
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 834 TATCTTAAAGCTGGAACTCCTTCTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAA 893
Query 898 GCAGAAGCTGGGTATGATTTAAGGTTGCCTCCAATGGCAGATCCTGATGTTATGAAGAAA 957
||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 894 GCAGAGGCTGGATATGATTTAAGGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAA 953
Query 958 AGAATTGCTGAAGAATGGGCTCCTTCTATTAGGAACATGACCTACTCGATACA-AGAGAA 1016
|| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 954 AGGATTGCTGAAGAATGGGCTCCTTCTATTAGGAACATGACCTACACGATA-ATAGAGAA 1012
Query 1017 AGGAAAGTTAAGAGATCATTTAGGGCGACCTATAATGACTCCAGTAAATGATTCTAATCC 1076
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1013 AGGAAAGTTAAGAGACCATTTAGGGCGACCTATAATGACTCCAGCAAATGATTCTAATCC 1072
Query 1077 TTGGTGGTCTATCTTCAAGCAAGCTGTTGAAGCAA-TGGGAGGAAAACTCGCAAAGCCTG 1135
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1073 GTGGTGGTCTATCTTCAAGCAAGCTGTTGAAGCAACT-GGTGGAAAACTCGCAAAGCCTG 1131
Query 1136 AAATTTTGGCTTCAACTACAGATTCACGCTTTATTCGCACTTTGGGAATTCCAACTTTT- 1194
||||||||||||| |||||||| ||||| ||| ||||||||||||||||||| | ||||
Sbjct 1132 AAATTTTGGCTTCCACTACAGACTCACGTTTTCTTCGCACTTTGGGAATTCC-AGTTTTC 1190
Query 1195 GGGTTCTCTCCAATGACCAATACGCCTATTTTATTGCATGACCATAACGAGTTCCTAAAG 1254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1191 GGGTTCTCTCCAATGACCAATACTCCTATTTTATTGCATGACCATAACGAGTTCCTAAAG 1250
Query 1255 GATACTGTATTCATGAAAGGAATAGAAGTATATGAATCGGTTATCAGCGCTCTAAGTTCC 1314
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1251 GATACTGTATTCATGAAAGGAATAGAAGTATATGAATCGGTTATCAGCGCTTTAAGTTCC 1310
Query 1315 TTTGAGGGAGAATCTGCTCAAGTGATTTGAAGCATGTAT-ATATGCAAACAATTGTGACA 1373
|||||||||| ||||| |||||||||||||||||||||| | |||||| ||||||||| |
Sbjct 1311 TTTGAGGGAGTATCTGATCAAGTGATTTGAAGCATGTATCA-ATGCAAGCAATTGTGAAA 1369
Query 1374 CACTGCTT-A---TGGTCAAGGCTCACATTGCTATGACCAAGAAAA-GTAGTAGCTGTTT 1428
| | |||| | ||||||||||||||||| |||||||||| ||| |||| ||||||||
Sbjct 1370 CGCCGCTTGAAGATGGTCAAGGCTCACATTTCTATGACCAA-AAAGTGTAGCAGCTGTTT 1428
Query 1429 CATCTGTAAGTTATTTTTATCAACACTTACTCTTGCTTTAACACCCTTAAGTGGTTGGTA 1488
||||||||||||||||||||| ||| |||||||| || | | | | | | ||
Sbjct 1429 CATCTGTAAGTTATTTTTATCGACATTTACTCTT-----AA-A---T---G-GCT-GATA 1474
Query 1489 ATAATCCTTTGTATATATATCAGACATTTGATTTGCCTGCATAATTCTCTAACT-CTGAA 1547
|||||||||||||||||| || |||||||||||| ||||||||||||| || | |||||
Sbjct 1475 ATAATCCTTTGTATATAT--CAAACATTTGATTTGTCTGCATAATTCTCAAA-TGCTGAA 1531
Query 1548 GAGAAAATGTCATTGGTGCTTGGAGCATGATTTCACAAAGTGTTGATCTTTT 1599
|||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1532 GAGAAA-TGTCATTGGTGCTTGGAGCATGATTTTACAAAGTGTTGATCTTTT 1582
> Ahg473806 jgi|Araly1|473806|fgenesh2_kg.1__3760__AT1G44180.1
Length=1570
Score = 1541 bits (834), Expect = 0.0
Identities = 1338/1573 (85%), Gaps = 68/1573 (4%)
Strand=Plus/Plus
Query 28 ATGGCGATatctcctcttctctggactct-tatcatcttctccataatcttctc-actcc 85
|||||| | |||||||||||||||||||| | || ||||||| | |||||||| | |||
Sbjct 1 ATGGCGGTGTCTCCTCTTCTCTGGACTCTCT-TCCTCTTCTCGGTTATCTTCTCGA-TCC 58
Query 86 aatcct-c-ct-cctccGAAGAAGACACACCAATCACACGATTCCAACAATACTTAAGAT 142
|||| | | | |||||||| ||||| ||||| || ||||| |||||||||||||
Sbjct 59 AATCATACAGTGAAGAAGAAGAAGATACACCGATCACGCGGTTCCAGCAATACTTAAGAT 118
Query 143 TCAACACAGCTCATCCAAACCCTAACTACACCGCACCAATCTC-CTTCCTCATTAACCAA 201
||||||| ||||||||||||||||||||||| ||||||||||| ||| || || | |||
Sbjct 119 TCAACACCGCTCATCCAAACCCTAACTACACAGCACCAATCTCTTTTCTTC-TTGATCAA 177
Query 202 GCTCA-ATCAATCGGTCTCACTAC-CAAAACAATCGAATTCATCTC-TGGCAAACCAATT 258
||| | ||| || ||||||||| | | ||| ||||| || | || ||| || ||| ||
Sbjct 178 GCT-AGATCCATTGGTCTCACTTCTC-GAACCATCGAGTTTGT-TCATGGTAAGCCAGTT 234
Query 259 CTTCTCATCACATGGCTAGGCTCAAACCCTAACCTCCCATCAATTCTCTTCAACTCTCAT 318
|||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 235 CTTCTCCTCACATGGCTAGGCTCAAACCTTAACCTTCCTTCAATTCTCTTCAACTCTCAT 294
Query 319 CTCGATTCAGTCCCCGCCGAATCAGAGAAATGGACATATCCACCGTTCTCAGCTCACAAA 378
|||||||| || ||||| ||||| |||||||||| | ||||||||||||||||||| | |
Sbjct 295 CTCGATTCTGTTCCCGCGGAATCCGAGAAATGGATACATCCACCGTTCTCAGCTCAGAGA 354
Query 379 ACCA-TCGACGGCCACATCTACGCTCGAGGAGCGCAAGACGACAAGTGTATCGGAGTTCA 437
| || | || || || ||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 355 A-CAGTGGATGGTCATATCTACGCTCGTGGCGCGCAAGATGACAAGTGTATTGGAGTTCA 413
Query 438 ATATCTAGAATCAATCAGAAACTTGAAATCGAGAGGCTTC-TCACCTCTCCGTACGATTC 496
||||||||| ||||||| ||||||||||| ||||||||| | ||||| |||||||| |
Sbjct 414 GTATCTAGAAGCAATCAGGAACTTGAAATCAAGAGGCTTCGT-TCCTCTTCGTACGATCC 472
Query 497 ATATCTCTTACGTTCCTGAAGAAGAGATCGGTGGATTCGACGGGATGATGAAATTCGCGG 556
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 473 ATATCTCTTACGTTCCTGAAGAAGAGATCGGTGGATTCGATGGGATGATGAAATTTGCGG 532
Query 557 CGTCATCGGAGTTTAAGGATTTGAATTTGGGATTTGCTATGGATGAAGGACAAGCTAATC 616
|||| | |||||||| ||| |||||||||||||||| |||||||||||||||||| | ||
Sbjct 533 CGTCTTTGGAGTTTAGGGAGTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAGTC 592
Query 617 CTGGCGATGAATTTAGGGTTTTTTACGCTGATCG-AGTTCCATGGCATTTTGTTATTAAA 675
| || ||||| |||||||| ||||||||||| || | | ||||||||| | |||||| |
Sbjct 593 CGGGAGATGAGTTTAGGGTGTTTTACGCTGAACGGACT-CCATGGCATCTCGTTATTCGA 651
Query 676 GCTGAGGGGATTCCAGGTCATGGCGCTAAGCTTTATGATAATTCAGCTATGGAGAATTTG 735
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 652 GCTGAGGGGATTCCAGGGCATGGAGCTAAGCTTTATGATAATTCAGCTATGGAGAATTTG 711
Query 736 ATGAAGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAGTTTGATTTTGTTAAAGCT 795
|||||||||||||||||||| |||| |||||| ||| | || |||||||| || || ||
Sbjct 712 ATGAAGAGTGTTGAGTTGATCTCTAAGTTTAGGGAGACGCAATTTGATTTGGTCAAGGCG 771
Query 796 GGTAAAGCTGCGTATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAACT 855
|| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 772 GGGAAAGCTGCGAATTCGGAGGTTATCTCTGTTAATCCAGCTTATCTTAAAGCTGGAACT 831
Query 856 CC-TACTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAAGCAGAAGCTGGGTATGA 914
|| | | ||||| || ||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 832 CCCTCC-ACTACCGGATTTGTGATGAATATGCAACCTTCAGAGGCAGAAGTTGGGTATGA 890
Query 915 TTTAAGGTTGCCTCCAATGGCAGATCCTGATGTTATGAAGAAAAGAATTGCTGAAGAATG 974
| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 891 TATAAGGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAAAGGATTGCTGAGGAATG 950
Query 975 GGCTCCTTCTATTAGGAACATGACCTACTCGATACAAGAGAAAGGAAAGTTAAG-AGATC 1033
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||
Sbjct 951 GGCTCCTTCTATTAGGAACATGACCTACACGATAGAAGAGAAAGGAAAGTTA-GCAGATC 1009
Query 1034 ATTTAGGGCGACCTATAATGACTCCAGTAAATGATTCTAATCCTTGGTGGTCTATCTTCA 1093
| ||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 1010 AGTTAGGGCGACCGATAATGACTCTAACAAATGGTTCTAATCCTTGGTGGTCTATCTTCA 1069
Query 1094 AGCAAGCTGTTGAAGCAA-TGGGAGGAAAACTCGCAAAGCCTGAAATTTTGGCTTCAACT 1152
|||||||| ||||||||| ||| ||||||||| ||||| |||||||||||| ||||| |
Sbjct 1070 AGCAAGCTATTGAAGCAACTGG-AGGAAAACTTGCAAAACCTGAAATTTTGATTTCAAGT 1128
Query 1153 ACAGATTCACGCTTTATTCGCACTTTGGGAATTCCAACTTTTGGGTT-CTCTCCAATGAC 1211
|||||||||||||||||||||||||| ||||||||| || | |||| |||||||||||
Sbjct 1129 ACAGATTCACGCTTTATTCGCACTTTAGGAATTCCAG-TTCTAGGTTTCTCTCCAATGAT 1187
Query 1212 CAATACGCCTATTTTATTGCATGACCATAACGAGTTCCT-AAAGGATACTGTATTCATGA 1270
|||||| ||||| ||| ||||||| ||||||||||| || |||| |||| || |||||||
Sbjct 1188 CAATACTCCTATCTTAGTGCATGATCATAACGAGTTTCTTAAAG-ATACAGTGTTCATGA 1246
Query 1271 AAGGAATAGAAGTATATGAATCGGTTATCAGCGCTCTAAGTTCCTTTGAGGGAGA-ATCT 1329
||||||||| |||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 1247 AAGGAATAGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGGGA-ATATCT 1305
Query 1330 GCTCAAGTGATTTGAAGCATGTATATATGCAAACAATTGTGACACACTGCTTATGGTCAA 1389
| ||||||||||||| | || | | | || | |||| || | ||| | |
Sbjct 1306 GATCAAGTGATTTGA--C-TGC-T-T--G-AAG-A-TTGTT-CA-A--GCT-A-----A- 1344
Query 1390 GGCTCACATT-GCTATGACCAAGAAAAGTAGTAGCTGTTTCATCTGTAAGTTATTTTTAT 1448
|||||||||| ||| ||||||||| ||| ||| |||||||| |||| ||| ||||
Sbjct 1345 GGCTCACATTTGCTTTGACCAAGATGTGTAATAGATGTTTCAT----AAGT-ATTGTTAT 1399
Query 1449 CAACACTT-ACTCTTGCTTTAACACCCTTAAGTGGTTGGTAATAATCCTTTGTATATATA 1507
||| || ||||| || || ||| |||| ||| || |||||| |||||||| | ||
Sbjct 1400 TGACA-TTCACTCTAGCCTTGTGACC-TTAAATGGCTGCTAATAACCCTTTGTA-A-ATG 1455
Query 1508 TCAGACATTTGATTTGCCTGCATAATTCTCTAACTCTGAAGAGAAAATGTCATTGGTGCT 1567
||||| |||||||||| || | ||||||| |||| |||| ||||| ||||||||||| |
Sbjct 1456 TCAGATATTTGATTTG--TGTAGAATTCTCAAACTTTGAAAAGAAA-TGTCATTGGTGAT 1512
Query 1568 TGGAGCATGATTT 1580
|| ||||||||||
Sbjct 1513 TGAAGCATGATTT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5