BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44830.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473823 jgi|Araly1|473823|fgenesh2_kg.1__3777__AT1G44830.1 987 0.0
> Ahg473823 jgi|Araly1|473823|fgenesh2_kg.1__3777__AT1G44830.1
Length=636
Score = 987 bits (534), Expect = 0.0
Identities = 603/637 (95%), Gaps = 2/637 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAAAACACTTCAAAAGAC-ACCAAAGAGAATGtcatctccatcatcatcatcttc 59
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAAAACACTTCAAAAGACTA-CAAAGAGAATGTCATCTCCATCATCATCATCTTC 59
Query 60 atcatcctcatcaacatcatcatcatccatAAGGATGAAGAAGTACAAGGGAGTGAGAAT 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 ATCATCCTCATCAACATCATCATCATCCATAAGGATGAAGAAGTACAAAGGAGTGAGAAT 119
Query 120 GAGAAGTTGGGGTTCATGGGTTTCAGAGATCAGAGCTCCTAATCAAAAGACAAGGATCTG 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 GAGAAGTTGGGGTTCATGGGTTTCAGAGATCAGAGCTCCTAACCAAAAGACAAGGATCTG 179
Query 180 GCTTGGTTCTTACTCAACTGCTGAAGCCGCGGCTAGAGCCTACGACGCAGCACTCCTATG 239
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 180 GCTTGGTTCTTACTCAACCGCTGAAGCCGCGGCTAGAGCCTACGACGCAGCTCTTCTCTG 239
Query 240 TCTTAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCAACTTCTCTCTACCA 299
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 240 TCTCAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCATCTTCTCTCTTTAA 299
Query 300 TATTATCAACAATGGTGATAACAACAATGACATGTCCCCTAAGTCTATACAAAGAGTAGC 359
||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 300 CATTATCAACAATGGTGATAACAACAATGACATGTCTCCAAAGTCCATACAGAGAGTAGC 359
Query 360 AGCTGCAGCTGCTGCTGCCAACACAGATCCTTCCTCATCATCAGTCTCTACTTCATCTCC 419
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TGCTGCTGCTGCTGCAGCCAACACAGATCCTTCTTCATCATCAGTCTCTACTTCATCTCC 419
Query 420 ATTGCTTTCCTCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTATGACCA 479
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 ATTGCTTTCATCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTACGACCA 479
Query 480 ACAAGTCTCCTTGTCTGAATCATCATCATGGTACAACTGCTTTGATGGTGATGATCAGTT 539
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||
Sbjct 480 ACAAGTCTCCTTGTCTGAATCATCATCATGGTACAATTGTTTTGATGGTGATGATGAATT 539
Query 540 CATGTTCATTAATGGAGTCTCCGCGCCGTATTTGACAACATCACTTTCTGATGATTTCTT 599
||||||||||||||| || || ||||| |||||||||||| |||||||||||||||||||
Sbjct 540 CATGTTCATTAATGGCGTTTCGGCGCCTTATTTGACAACACCACTTTCTGATGATTTCTT 599
Query 600 TGAGGAAGGAGATATCAGATTATGGAACTTCTGCTGA 636
||||||||||||||||||||||||||| |||||||||
Sbjct 600 TGAGGAAGGAGATATCAGATTATGGAATTTCTGCTGA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5