BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G44835.2

Length=1221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922923 jgi|Araly1|922923|scaffold_104204.1                        529    2e-149


> Ahg922923 jgi|Araly1|922923|scaffold_104204.1
Length=506

 Score =  529 bits (286),  Expect = 2e-149
 Identities = 326/346 (94%), Gaps = 0/346 (0%)
 Strand=Plus/Plus

Query  260  AGGACAAGAAACATCGGTATTATATTGTTTCAGCGATGGTGGATACGAAAGTTGACATGA  319
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  122  AGGACAAGAAACATCGGTATTATATCGTTTCAGCCATGGTGGATACGAAAGTTGACATGA  181

Query  320  AAGTTTTATCTCAGAGACTTGGTCTTGGAAAAGGAGGGATTAGAATGGCTCCAGAAGAAG  379
            ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct  182  AAGTTTTATCTCAGAGACTTGGTCTGGGAAAAGGAGGAATTAGAATGGCTCCTGAAGAAG  241

Query  380  CACTTGGTGAGCTTTTGCAGGTATCCCTCGGATGTGTTACCCCGTTTGCAGTTGTAAATG  439
            |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct  242  CACTTGGTGAGCTTTTGCAGGTGTCCCTTGGATGTGTTACACCGTTTGCAGTTGTAAATG  301

Query  440  AATCAGCAAGAGACGTGTCTCTCTTGTTAGACCAAAAATTCAAGAACCAAACGCGTTGCA  499
            ||||||||||||| ||| | |||||||||||||||||||||||||||||||| || ||||
Sbjct  302  AATCAGCAAGAGATGTGGCGCTCTTGTTAGACCAAAAATTCAAGAACCAAACACGCTGCA  361

Query  500  TCTTCCACCCATTGTCTAACGATGTCTCAGTCTCTCTGAACACATTGGGTCTGGACAAGT  559
            |||||||||||||||| ||| | |||||||||||||| ||||  ||||||||||||||||
Sbjct  362  TCTTCCACCCATTGTCGAACAACGTCTCAGTCTCTCTTAACATGTTGGGTCTGGACAAGT  421

Query  560  TTCTGAAGTCGATTGGGAGAGATCCCGTATACGTTGACCTTGAGGC  605
            ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  422  TTCTGAAGTCGATTGGGAGAGATCCCGTATATGTTGACCTTGAGGC  467


 Score =  196 bits (106),  Expect = 2e-49
 Identities = 121/128 (95%), Gaps = 1/128 (1%)
 Strand=Plus/Plus

Query  86   TGAtttttgattttttCGATTCAATGGGTTTCACCAAAGATCAGTTGCTTGATCGACTTC  145
            ||| ||||||||  |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  3    TGA-TTTTGATTGATTCGATTCAATGGGTTTCTCCAAAGATCAGTTGCTTGATCGACTTC  61

Query  146  AGGAACTTGAGATTGATTATTCCAAGTATGAACATCCGCCTGTACTAACCGTCGAAGAAC  205
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  62   AGGAACTTGAGATTGATTATTCCAAGTATGAACATCCGCCTGTTTTAACCGTCGAAGAAC  121

Query  206  AGGCCAAG  213
            ||| ||||
Sbjct  122  AGGACAAG  129



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45595008732


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5