BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44890.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473826 jgi|Araly1|473826|fgenesh2_kg.1__3780__AT1G44890.1 1301 0.0
> Ahg473826 jgi|Araly1|473826|fgenesh2_kg.1__3780__AT1G44890.1
Length=972
Score = 1301 bits (704), Expect = 0.0
Identities = 894/981 (91%), Gaps = 32/981 (3%)
Strand=Plus/Plus
Query 130 ATGTCGCTCGTCCGTTGTTTATCCCTCAGATCGGTTCTCAATCCTCAACGTTACCGATCA 189
||||| || || ||||||||||||||||| ||||| || |||||||||||| ||||||||
Sbjct 1 ATGTCACTTGTTCGTTGTTTATCCCTCAGGTCGGTGCTTAATCCTCAACGTCACCGATCA 60
Query 190 TCTTACTCCTTTCTCATCCATCTTCAGAA-TCCTCGTGAAGAAGAAGAACCTACACAC-A 247
||||| || | ||||||||||||||| || ||||||||||||||| |||||||||| | |
Sbjct 61 TCTTATTCATGTCTCATCCATCTTCA-AACTCCTCGTGAAGAAGACGAACCTACACGCAA 119
Query 248 AA----A-C---TCGAAGTTACCACAGTATCATTCACCAGAACTCGTTAATCGGTGCCTC 299
|| | | |||||||||||||||| ||||||||||||| ||||||||| ||| |
Sbjct 120 AACTCCATCAATTCGAAGTTACCACAGTTTCATTCACCAGAATTCGTTAATCCGTG---C 176
Query 300 CTCGACGGCTTTCTCTCGCTATCGCTCTGTTTTCCAATCTCC-TGCG-ACGATTTCATCG 357
|||| |||||||||||||| | |||||||||||||||||||| | || || |||| ||
Sbjct 177 CTCGGCGGCTTTCTCTCGCAACCGCTCTGTTTTCCAATCTCCAT-CGTCCG-TTTCGTCA 234
Query 358 GATCGATTCATTTCGACTTTCAATTTCTC-TGGTTCCGGTGACGCTGTCATCGATTGGTT 416
|||||||||||||| || ||||||||| | || |||||||||||| |||||| |||||||
Sbjct 235 GATCGATTCATTTCAACCTTCAATTTC-CATGATTCCGGTGACGCCGTCATCAATTGGTT 293
Query 417 GTTGCAATCTGTGGTTTC-GAGGAGTTATGAGTTACATAATGTTGCTGATGTTCTTGTTT 475
|||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 294 GTTGCAATCTGTGGTTTCTAAGG-GTTATGAGTTACACAATGTCGCTGATGTTCTTGTTT 352
Query 476 CTCTTAACCATTTGCTTGCATTGTTGAATTCTTTCACATTTTCTCAATGGTGGGTGTTTA 535
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTCTTAATCACTTGCTTGCATTGTTGAATTCTTTCACATTTTCTCAATGGTGGGTGTTTA 412
Query 536 TCATCGT-AGCATCGCTTTTGATTCGAGGAATCACAGTTCCGGTTATGGTTGATATGCTT 594
||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 413 TCATCGTTA-CATCGCTTTTAATTCGAGGAATCACAATTCCGGTTATGGTTGATATGCTT 471
Query 595 AACAACATTGCAAAGTTTTTTAAGAGTCTACGCTCGAACCAAGGAGAGGTTCTAGACAAG 654
||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 472 AACAACATTGCAAAGTTCTTTAAGAGTCTTCGCTCGCACCAAGGGGAGGTTCTAGACAAG 531
Query 655 GTATCATTTCTTAATAAAAGTCGAGGAGTAATGTACACCATGTTGGAGAAGGAGTTTTTT 714
|||||| | || | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 532 GTATCAATACTCAGTAAAAGTCGAGGAGTAATGTACACCATGTTGGAAAAGGAGTTTTTT 591
Query 715 GGAGTTAAAGGATCAGTCATTGGTCAGGGTATTCAAGTTCCTATCTTCTGGTTCTCAATG 774
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 592 GGAGTTAAAGGATCAGTCATTGGTCAGGGCATTCAAGTTCCTATCTTTTGGTTCTCAATG 651
Query 775 GGAGAGTTGAA-ACAAAACATGGTTGAGATTCTTATGTCACGTCTTCGGGGTAAGATTTT 833
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 652 GGAGAGTT-AAGACAAAACATGGTTGAGATTCTTATGTCACGTCTTCGGGGTAAGATGTT 710
Query 834 GTCGGCGGAATTGATCAAGAACGGAGTCTTAAGCAGAGGACGCTTAGTGGTGGTCGTTGG 893
||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 711 GTCGGCGGAATTGATCAAGAACGGAGTCTTAAGTAGAGGACGGTTAGTGGTGATCGTTGG 770
Query 894 CGATGGATTCGGGATTGAAATCCAAATGTTCGATCTTGATTTCTCTCTTATCTTGAGGCG 953
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 771 CGATGGATTCGGGCTTGAAATCCAAATGTTTGATCTTGATTTCTCTCTTATCTTGAGGCG 830
Query 954 TCGTCAAGTCTCGCAAAGCTA-----A-TAAGTTTCGATTTCATTCAATAATTGGAGCGT 1007
||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 831 ACGTCAAGTCTCACAAAGCTACGTTTAATAAGTTTCGATTTCATTCAATAATTGGAGTGT 890
Query 1008 TTTGCTTTTAGTGGCTCAATGGTGTTTATTTGATGATAGAGCCAGCACAAAATGTGAATA 1067
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 891 TTTGCTTTTAGTGGCTCAATGGTGTTTATTTGATTATAGAGCCAGCACAAAATGTGAATA 950
Query 1068 AAGCGTGTTTGGCTGGATTCT 1088
|||||||||||| ||||||||
Sbjct 951 AAGCGTGTTTGGTTGGATTCT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5