BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44910.1
Length=3213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922934 jgi|Araly1|922934|scaffold_104215.1 4782 0.0
> Ahg922934 jgi|Araly1|922934|scaffold_104215.1
Length=2950
Score = 4782 bits (2589), Expect = 0.0
Identities = 2821/2932 (96%), Gaps = 20/2932 (1%)
Strand=Plus/Plus
Query 170 AAGCTTTATTTTGTGTGTAGATGGCGAATAATCCTCCGCAGTCTTCTGGTAC-C--CAGT 226
||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 AAGCTTTATTTTGTGTGAAGATGGCGAATAATCCTCCGCAGTCTTCTGGTGCTCAGCAGT 60
Query 227 TTCGGCCGATGG-TACCTGGACAGCAGGGTCAGCATTTTGTTCCTGCAGCTTCACAACCT 285
|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TTCGGCCGATGGCT-CCTGGACAGCAGGGTCAGCATTTTGTTCCTTCAGCTTCACAACCT 119
Query 286 TTTCACCCTTATGGACATGTACCTCCAAATGTTCAAAGTCAGCCTCCACAGTATTCTCAG 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCACCCTTATGGACATGTACCTCCAAATGTTCAAAGTCAGCCTCCACAGTATTCTCAG 179
Query 346 CCGATACAGCAGCAGCAGCTCTTTCCAGTGAGACCAGGTCAGCCTGTGCATATTACATCA 405
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 180 CCGATACAGCAGCAGCAGCTCTTTCCTGTGAGACCAGGCCAGCCTGTGCATATTACATCA 239
Query 406 TCCTCACAGGCTGTATCAGTTCCGTATATTCAAACGAACAAGATTCTCACTTCTGGATCT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTCACAGGCTGTATCAGTTCCGTATATTCAAACGAACAAGATTCTCACTTCTGGATCT 299
Query 466 ACTCAACCACAGCCAAATGCACCTCCAATGACGGGCTTTGCTACATCTGGACCTCCATTT 525
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 300 ACTCAACCACAGCCAAATGCACCTCAAATGACGGGCTTTGCTGCATCTGGACCTCCATTT 359
Query 526 TCTTCTCCATATACTTTTGTACCATCATCTTATCCTCAGCAACAACCAACATCCTTGGTC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTCTCCATATACTTTTGTACCATCATCTTATCCTCAGCAACAACCAACATCCTTGGTC 419
Query 586 CAACCAAATTCTCAGATGCATGTAGCTGGCGTCCCTCCAGCAGCAAACACTTGGCCTGTT 645
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 CAACCAAATTCTCAGATGCATGTAGCCGGCGTCCCTCCAGCAGCAAACACTTGGCCTGTT 479
Query 646 CCTGTTAATCAAAGCACATCACTTGTTTCCCCTGTGCAGCAGACTGGGCAACAAACACCG 705
||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CCTGTAAATCAAAGTACCTCACTTGTTTCTCCTGTGCAGCAGACTGGGCAACAAACACCA 539
Query 706 GTCGCAGTTTCCACAGACCCAGGAAACTTGACTCCGCAATCTGCATCTGACTGGCAGGAG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTCGCAGTTTCCACAGACCCAGGAAACTTGACTCCGCAATCTGCATCTGACTGGCAGGAG 599
Query 766 CATACATCTGCTGATGGGAGAAAGTATTATTATAACAAGCGGAC-AAAGCAATCAAATTG 824
|||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 600 CATACATCTGTTGATGGGAGAAAGTATTATTATAACAAGCGGACGAAA-CAATCAAATTG 658
Query 825 GGAAAAACCTCTTGAACTGATGACACCACTTGAGAGGGCTGATGCATCCACTGTATGGAA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAAAAACCTCTTGAACTGATGACACCACTTGAGAGGGCTGATGCATCCACTGTATGGAA 718
Query 885 GGAATTTACAACACCTGAAGGAAAGAAATATTATTATAACAAGGTTACAAAGGAGTCTAA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGAATTTACAACACCTGAAGGAAAGAAATATTATTATAACAAGGTTACAAAGGAGTCTAA 778
Query 945 GTGGACAATTCCGGAAGATTTAAAGTTAGCTCGGGAACAAGCCCAACTAGCTAGTGAAAA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGGACAATTCCGGAAGATTTAAAGTTAGCTCGGGAACAAGCCCAACTAGCTAGTGAAAA 838
Query 1005 AACGTCCCTTTCGGAAGCTGGATCTACCCCTCTATCCCACCATGCTGCATCCTCGTCTGA 1064
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 AACGTCCCTTTCAGAAGCTGGATCTACCCCTCTGTCCCACCATGCTGCATCCTCGTCTGA 898
Query 1065 TCTAGCAGTTAGCACTGTGACTTCTGTTGTTCCCAGCACATCTTCAGCACTTACTGGACA 1124
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 TCTAGCCGTTAGCACTGTGACTTCTGTTGTTCCCAGCACATCTTCAGCACTTCCTGGACA 958
Query 1125 TTCTTCAAGCCCTATTCAAGCGGGTTTGGCTGTACCTGTCACCCGTCCTCCCTCTGTTGC 1184
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 959 TTCTTCAAGCCCTATTCAAGCGGGTTTGGCTGTACCTGTCACTCGTCCTCCCTTTGTTGC 1018
Query 1185 TCCTGTTACTCCAACATCTGGTGCAATTAGTGACACTGAGGCTACTACAATAAAAGGCGA 1244
|||||| ||||||||||||| ||||| |||||| ||||||||| || |||||||| |||
Sbjct 1019 TCCTGTCACTCCAACATCTGCTGCAACTAGTGATACTGAGGCTTCTGCAATAAAACCCGA 1078
Query 1245 TAATTTATCATCTCGGGGGGCAGATGATTCAAATGATGGAGCTACAGCACAAAACAATGA 1304
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TAATTTACCTTCTCGGGGGGCAGATGATTCAAATGATGGAGCTACAGCACAAAACAATGA 1138
Query 1305 GGCTGAGAATAAGGAAATGTCTGTGAATGGAAAAGCCAATTTGTCACCTGCTGGTGACAA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGCTGAGAATAAGGAAATGTCTGTGAATGGAAAAGCCAATTTGTCACCTGCTGGTGACAA 1198
Query 1365 AGCAAATGTCGAGGAACCTATGGTATATGCTACTAAGCAGGAGGCCAAAGCTGCTTTCAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGCAAATGTCGAGGAACCTATGGTATATGCTACTAAGCAGGAGGCCAAAGCTGCTTTCAA 1258
Query 1425 GTCTCTTTTGGAATCTGTAAATGTTCATTCCGACTGGACATGGGAACAGACATTGAAAGA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTCTCTTTTGGAATCTGTAAATGTTCATTCCGACTGGACATGGGAACAGACATTGAAAGA 1318
Query 1485 GATTGTTCACGATAAAAGATATGGTGCTTTGAGGACACTCGGCGAGCGGAAACAAGCGTT 1544
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 GATTGTTCACGATAAAAGATATGGTGCTTTGAGGACACTCGGTGAGCGGAAACAAGCGTT 1378
Query 1545 TAACGAGTATCTTGGCCAAAGGAAAAAAGTGGAAGCTGAGGAAAGACGAAGGAGGCAGAA 1604
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TAACGAGTATCTTGGTCAAAGGAAAAAAGTGGAAGCTGAGGAAAGACGAAGGAGGCAGAA 1438
Query 1605 GAAAGCTCGGGAAGAATTTGTCAAGATGCTAGAGGAGTGTGAAGAACTTTCATCATCCCT 1664
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1439 GAAAGCTAGGGAAGAATTTGTCAAGATGCTAGAGGACTGTGAAGAACTTTCATCATCCAT 1498
Query 1665 GAAATGGAGCAAAGCAATGAGTTTGTTCGAAAATGATCAGCGTTTTAAAGCTGTTGACCG 1724
||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 1499 GAAATGGAGCAAAGCAATGGGTTTGTTTGAAAATGATGAGCGCTTTAAAGCTGTTGATCG 1558
Query 1725 TCCTAGGGATCGTGAAGATCTTTTTGACAATTACATTGTGGAACTTGAGAGGAAGGAAAG 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCCTAGGGATCGTGAAGATCTTTTTGACAATTACATTGTGGAACTTGAGAGGAAGGAAAG 1618
Query 1785 AGAAAAGGCAGCGGAGGAACATCGGCAGTATATGGCAGACTATCGGAAGTTTCTTGAAAC 1844
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1619 AGAAAAGGCAGCGGAGGAACATCGGCAGCATATGGCAGAGTATCGGAAGTTTCTTGAAAC 1678
Query 1845 CTGTGACTATATCAAAGCTGGTACACAATGGCGCAAAATTCAAGATAGACTGGAGGATGA 1904
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1679 CTGTGACTATATCAAAGCTGGTACACAATGGCGCAAAATTCAAGAGCGACTGGAGGATGA 1738
Query 1905 TGACAGATGCTCATGTCTTGAAAAGATAGATCGTCTGATTGGTTTTGAGGAATACATTCT 1964
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1739 CGAAAGATGCTCATGTCTCGAAAAGATAGATCGTCTGATTGGTTTTGAGGAATACATGCT 1798
Query 1965 TGACCTagagaaggaagaagaagagctgaagagagtagagaaagaaCATGTAAGGCGGGC 2024
|||| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1799 TGACTTAGAGAAGGAAGAGGAGGAGCAGAAGAGAGTAGAGAAAGAACATGTAAGGCGGGC 1858
Query 2025 CGAGAGAAAAAACCGTGATGCATTTCGTACACTATTGGAAGAACATGTTGCTGCAGGCAT 2084
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 1859 CGAGAGAAAAAACCGTGATGCACTTCGTACACTTTTGGAAGAACATGTTGCTGCTGGCAT 1918
Query 2085 CCTTACAGCCAAGACGTACTGGTTGGATTATTGCATTGAGTTAAAAGACTTGCCCCAATA 2144
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1919 CCTTACAGCCAAGACGTACTGGTTGGATTATTGCGTTGAGTTAAAAGACTTGCCCCAATA 1978
Query 2145 CCAAGCTGTTGCATCTAATACATCTGGTTCAACTCCGAAAGACTTGTTTGAAGATGTCAC 2204
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1979 CCAAGCTGTTGCATCTAATACATCTGGCTCAACTCCGAAAGACTTGTTTGAAGATATCAC 2038
Query 2205 AGAAGAATTAGAGAAGCAGTATCATGAGGATAAGAGCTATGTGAAGGATGCTATGAAGTC 2264
||||||||||||||| |||||||||||||| ||||| || || ||||| |||||||||||
Sbjct 2039 AGAAGAATTAGAGAAACAGTATCATGAGGAGAAGAGTTACGTAAAGGAAGCTATGAAGTC 2098
Query 2265 AAGAAAGATTTCCATGGTCTCCTCGTGGCTGTTTGAAGATTTTAAATCTGCTATTTCAGA 2324
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 AAGGAAGATTTCCATGGTCTCCTCGTGGCTGTTTGAAGATTTTAAATCTGCTATTTCAGA 2158
Query 2325 AGATCTCAGTACTCAACAGATATCAGACATAAATTTAAAGCTTATATATGATGACTTGGT 2384
|||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2159 AGATCTCAGTTCTCAACCGATATCAGATATAAATTTAAAGCTTATATATGATGACTTGGT 2218
Query 2385 TGGGAGAGTGAAGGAAAAAGAAGAAAAAGAGGCCAGAAAGCTTCAGCGTCTGGCTGAAGA 2444
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2219 TGGGAGAGCGAAGGAAAAAGAAGAAAAAGAGGCTAGAAAGCTTCAGCGTCTGGCTGAAGA 2278
Query 2445 ATTTACCAATCTGTTGCACACTTTCAAGGAAATCACCGTAGCTTCAAATTGGGAAGATAG 2504
||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct 2279 ATTTACCAATCTGTTGCACACTTTCAAGGAAATAACCGCAGCTTCGAATTGGGAAGATAG 2338
Query 2505 CAAACAACTAGTAGAAGAAAGTCAAGAGTACAGATCGATTGGAGATGAAAGTGTTAGCCA 2564
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 CAAACAACTATTAGAAGAAAGTCAAGAGTACAGATCGATTGGAGATGAAAGTGTTAGCCA 2398
Query 2565 AGGGTTATTTGAGGAATACATAACGAGTTTACAAGAAAAGGCAAAGGAGAAGGAGCGTAA 2624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 AGGGTTATTTGAGGAATACATAACGAGTTTACAAGAAAAGGCAAAGGAGAAGGAGCGTAA 2458
Query 2625 GCGTGACgaggaaaaggttagaaaagagaaggaaagggacgagaaagagaaacggaaaga 2684
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 GCGTGATGAGGAAAAGGTTAGAAAAGAGAAGGAAAGGGACGAGAAAGAGAAACGGAAAGA 2518
Query 2685 caaggataaggagagaagggaaaaggaaagagaacgtgaaaaagagaagggaaaagagag 2744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 CAAGGATAAGGAGAGAAGGGAAAAGGAAAGAGAACGTGAAAAAGAGAAGGGAAAAGAGAG 2578
Query 2745 gagtaaacgggaagaaTCAGATGGTGAGACTGCTATGGATGTGAGCGAAGGTCATAAAGA 2804
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2579 GAGTAAACGAGAAGAATCAGATGGTGAGACTGCTATGGATGTGAGCGAAGGTCACAAAGA 2638
Query 2805 CGAGAAAAGAAAGGGAAAAGATCGTGACAGAAAACATCGAAGACGGCATCACAACAATTC 2864
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2639 CGAGAAAAGAAAGGGAAAAGATCGTGACAGAAAACATCGGAGACGGCATCACAA---TTC 2695
Query 2865 TGATGAAGATGTTAGTTCTGATAGGGATGACAGAGATGAGTCGAAGAAATCATCCCGTAA 2924
|||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 2696 TGATGAAGATGTCAGTTCTGATAGGGATGACAGAGATGAGTCGAAGAAGTCCTCTCGTAA 2755
Query 2925 ACATGGTAATGATCGCAAAAAATCAAGAAAGCACGCAAACTCGCCTGAATCGGAGAGTGA 2984
||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||
Sbjct 2756 ACATGGTAATGATCGTAAAAAATCAAGAAAGCACGCAAACTCACCTGAATCAGACAGTGA 2815
Query 2985 AAACCGGCATAAAAGACAGAAAAA--AG-AG----A--GTAGTCGCCGAAGTGGTAATGA 3035
||||||||||||||||||||| || || || | ||||||| ||||||||| ||||
Sbjct 2816 AAACCGGCATAAAAGACAGAAGAAGGAGCAGCGGGAAAGTAGTCGTCGAAGTGGTCATGA 2875
Query 3036 CGAGCTAGAGGATGGAGAAGTTGGGGAGTGATAGTGAAATTCGACATTAATC 3087
|||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 2876 CGAGCTAGAGGATGGAGAAGTTGGGGAG-GATGGTGAAATCCGACATTAATC 2926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121393610815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5